Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:11:23 (1843163): wrapper (7.7.26015): starting
17:11:23 (1843163): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 17:11:23] Arguments: --nthreads 2
[2026-01-27 17:11:23] Threads: 2
[2026-01-27 17:11:23] Checking for CVMFS
[2026-01-27 17:11:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 17:11:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 17:11:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 17:11:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 17:11:24] 2.9.2.0 770802 9826 68460 155589 0 50 21363536 36864001 0 130560 0 3196968 99.982 315383 7950 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 17:11:24] CVMFS is ok
[2026-01-27 17:11:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 17:11:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 17:11:24] Further information can be found at the LHC@home message board.
[2026-01-27 17:11:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 17:11:24] Checking for apptainer binary...
[2026-01-27 17:11:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 17:11:24] Running /usr/bin/apptainer --version
[2026-01-27 17:11:24] apptainer version 1.4.1-1.1
[2026-01-27 17:11:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 17:11:24] thA337
[2026-01-27 17:11:24] apptainer works
[2026-01-27 17:11:24] Set ATHENA_PROC_NUMBER=2
[2026-01-27 17:11:24] Set ATHENA_CORE_NUMBER=2
[2026-01-27 17:11:24] Starting ATLAS job with PandaID=6982692389
[2026-01-27 17:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 19:06:01]  *** The last 200 lines of the pilot log: ***
[2026-01-27 19:06:01] 2026-01-27 18:05:22,911 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 19:06:01] 2026-01-27 18:05:22,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 19:06:01] 2026-01-27 18:05:22,911 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 19:06:01] 2026-01-27 18:05:22,911 | INFO     | job 6982692389 has completed (purged errors)
[2026-01-27 19:06:01] 2026-01-27 18:05:22,912 | INFO     | overall cleanup function is called
[2026-01-27 19:06:01] 2026-01-27 18:05:23,917 | INFO     | --- collectZombieJob: --- 10, [1851595]
[2026-01-27 19:06:01] 2026-01-27 18:05:23,917 | INFO     | zombie collector waiting for pid 1851595
[2026-01-27 19:06:01] 2026-01-27 18:05:23,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 19:06:01] 2026-01-27 18:05:23,918 | INFO     | collected zombie processes
[2026-01-27 19:06:01] 2026-01-27 18:05:23,918 | INFO     | will attempt to kill all subprocesses of pid=1851595
[2026-01-27 19:06:01] 2026-01-27 18:05:23,958 | INFO     | process IDs to be killed: [1851595] (in reverse order)
[2026-01-27 19:06:01] 2026-01-27 18:05:23,979 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 19:06:01] 2026-01-27 18:05:23,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 19:06:01] 2026-01-27 18:05:23,980 | INFO     | did not find any defunct processes belonging to 1851595
[2026-01-27 19:06:01] 2026-01-27 18:05:23,981 | INFO     | did not find any defunct processes belonging to 1851595
[2026-01-27 19:06:01] 2026-01-27 18:05:23,981 | INFO     | ready for new job
[2026-01-27 19:06:01] 2026-01-27 18:05:23,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 19:06:01] 2026-01-27 18:05:23,982 | INFO     | **************************************
[2026-01-27 19:06:01] 2026-01-27 18:05:23,982 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 19:06:01] 2026-01-27 18:05:23,982 | INFO     | **************************************
[2026-01-27 19:06:01] 2026-01-27 18:05:23,982 | INFO     | 
[2026-01-27 19:06:01] 2026-01-27 18:05:23,982 | INFO     | architecture information:
[2026-01-27 19:06:01] 2026-01-27 18:05:23,982 | INFO     | executing command: cat /etc/os-release
[2026-01-27 19:06:01] 2026-01-27 18:05:23,990 | INFO     | cat /etc/os-release:
[2026-01-27 19:06:01] NAME="CentOS Linux"
[2026-01-27 19:06:01] VERSION="7 (Core)"
[2026-01-27 19:06:01] ID="centos"
[2026-01-27 19:06:01] ID_LIKE="rhel fedora"
[2026-01-27 19:06:01] VERSION_ID="7"
[2026-01-27 19:06:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 19:06:01] ANSI_COLOR="0;31"
[2026-01-27 19:06:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 19:06:01] HOME_URL="https://www.centos.org/"
[2026-01-27 19:06:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 19:06:01] 
[2026-01-27 19:06:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 19:06:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 19:06:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 19:06:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 19:06:01] 
[2026-01-27 19:06:01] 2026-01-27 18:05:23,990 | INFO     | **************************************
[2026-01-27 19:06:01] 2026-01-27 18:05:24,491 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | INFO     | sufficient remaining disk space (490460938240 B)
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | INFO     | update_server=False
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:06:01] 2026-01-27 18:05:24,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 19:06:01] 2026-01-27 18:05:24,760 | INFO     | all data control threads have been joined
[2026-01-27 19:06:01] 2026-01-27 18:05:24,791 | INFO     | all job control threads have been joined
[2026-01-27 19:06:01] 2026-01-27 18:05:25,509 | INFO     | [job] retrieve thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:25,509 | INFO     | [job] queue monitor thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:25,542 | INFO     | [payload] failed_post thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:25,567 | INFO     | all payload control threads have been joined
[2026-01-27 19:06:01] 2026-01-27 18:05:25,766 | INFO     | [data] control thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:25,797 | INFO     | [job] control thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:25,849 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 19:06:01] 2026-01-27 18:05:26,065 | INFO     | [payload] validate_post thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:26,073 | WARNING  | process 1851595 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 19:06:01] 2026-01-27 18:05:26,095 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 19:06:01] 2026-01-27 18:05:26,121 | INFO     | number of running child processes to parent process 1851595: 1
[2026-01-27 19:06:01] 2026-01-27 18:05:26,121 | INFO     | maximum number of monitored processes: 6
[2026-01-27 19:06:01] 2026-01-27 18:05:26,121 | INFO     | aborting job monitoring since job object (job id=6982692389) has expired
[2026-01-27 19:06:01] 2026-01-27 18:05:26,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:06:01] 2026-01-27 18:05:26,122 | INFO     | will abort loop
[2026-01-27 19:06:01] 2026-01-27 18:05:26,363 | INFO     | [job] validate thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:26,569 | INFO     | [data] copytool_in thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:26,572 | INFO     | [payload] control thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:26,603 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:26,621 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:26,937 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:27,127 | INFO     | [job] job monitor thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:27,855 | INFO     | [data] copytool_out thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:28,510 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:34,895 | INFO     | job.realtimelogging is not enabled
[2026-01-27 19:06:01] 2026-01-27 18:05:35,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 19:06:01] 2026-01-27 18:05:55,551 | INFO     | PID=1847188 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 19:06:01] 2026-01-27 18:05:55,551 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 19:06:01] 2026-01-27 18:05:55,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 19:06:01] 2026-01-27 18:05:55,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 19:06:01] 2026-01-27 18:05:56,511 | INFO     | [monitor] cgroup control has ended
[2026-01-27 19:06:01] 2026-01-27 18:05:56,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139896919316288)>', '<ExcThread(monitor, started 139896035452672)>']
[2026-01-27 19:06:01] 2026-01-27 18:05:57,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 19:06:01] 2026-01-27 18:05:57,562 | INFO     | [monitor] control thread has ended
[2026-01-27 19:06:01] 2026-01-27 18:06:01,858 | INFO     | all workflow threads have been joined
[2026-01-27 19:06:01] 2026-01-27 18:06:01,859 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 19:06:01] 2026-01-27 18:06:01,859 | INFO     | traces error code: 0
[2026-01-27 19:06:01] 2026-01-27 18:06:01,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 19:06:01] 2026-01-27 18:06:01,902 [wrapper] ==== pilot stdout END ====
[2026-01-27 19:06:01] 2026-01-27 18:06:01,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 19:06:01] 2026-01-27 18:06:01,906 [wrapper] pilotpid: 1847188
[2026-01-27 19:06:01] 2026-01-27 18:06:01,908 [wrapper] Pilot exit status: 0
[2026-01-27 19:06:01] 2026-01-27 18:06:01,913 [wrapper] pandaids: 6982692389
[2026-01-27 19:06:01] 2026-01-27 18:06:01,924 [wrapper] cleanup supervisor_pilot 1856397 1847189
[2026-01-27 19:06:01] 2026-01-27 18:06:01,926 [wrapper] Test setup, not cleaning
[2026-01-27 19:06:01] 2026-01-27 18:06:01,928 [wrapper] apfmon messages muted
[2026-01-27 19:06:01] 2026-01-27 18:06:01,929 [wrapper] ==== wrapper stdout END ====
[2026-01-27 19:06:01] 2026-01-27 18:06:01,931 [wrapper] ==== wrapper stderr END ====
[2026-01-27 19:06:01]  *** Error codes and diagnostics ***
[2026-01-27 19:06:01]     "exeErrorCode": 0,
[2026-01-27 19:06:01]     "exeErrorDiag": "",
[2026-01-27 19:06:01]     "pilotErrorCode": 0,
[2026-01-27 19:06:01]     "pilotErrorDiag": "",
[2026-01-27 19:06:01]  *** Listing of results directory ***
[2026-01-27 19:06:01] total 665608
[2026-01-27 19:06:01] -rwx------ 1 boinc boinc     36322 Jan 25 07:28 runpilot2-wrapper.sh
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc    584422 Jan 25 07:28 pilot3.tar.gz
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc      5111 Jan 25 07:29 queuedata.json
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc       100 Jan 27 17:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 19:06:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 17:11 run_atlas
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc       105 Jan 27 17:11 job.xml
[2026-01-27 19:06:01] -rw-r--r-- 2 boinc boinc 492172755 Jan 27 17:11 EVNT.48310824._000125.pool.root.1
[2026-01-27 19:06:01] -rw-r--r-- 2 boinc boinc    597761 Jan 27 17:11 input.tar.gz
[2026-01-27 19:06:01] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:11 start_atlas.sh
[2026-01-27 19:06:01] drwxrwx--x 2 boinc boinc      4096 Jan 27 17:11 shared
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:11 boinc_setup_complete
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc      6206 Jan 27 17:11 init_data.xml
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:11 boinc_lockfile
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc      2525 Jan 27 17:11 pandaJob.out
[2026-01-27 19:06:01] -rw------- 1 boinc boinc   1005162 Jan 27 17:11 agis_schedconf.cvmfs.json
[2026-01-27 19:06:01] -rw------- 1 boinc boinc   1516246 Jan 27 17:11 agis_ddmendpoints.agis.ALL.json
[2026-01-27 19:06:01] -rw------- 1 boinc boinc       419 Jan 27 17:11 workernode_map.json
[2026-01-27 19:06:01] drwx------ 5 boinc boinc      4096 Jan 27 17:11 pilot3
[2026-01-27 19:06:01] -rw------- 1 boinc boinc 182985820 Jan 27 19:05 HITS.48310826._010327.pool.root.1
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc       530 Jan 27 19:05 boinc_task_state.xml
[2026-01-27 19:06:01] -rw------- 1 boinc boinc        95 Jan 27 19:05 pilot_heartbeat.json
[2026-01-27 19:06:01] -rw------- 1 boinc boinc      1011 Jan 27 19:05 memory_monitor_summary.json
[2026-01-27 19:06:01] -rw------- 1 boinc boinc    264782 Jan 27 19:05 log.48310826._010327.job.log.tgz.1
[2026-01-27 19:06:01] -rw------- 1 boinc boinc      6292 Jan 27 19:05 heartbeat.json
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc        27 Jan 27 19:05 wrapper_checkpoint.txt
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc      8192 Jan 27 19:05 boinc_mmap_file
[2026-01-27 19:06:01] -rw------- 1 boinc boinc      5344 Jan 27 19:06 pilotlog.txt
[2026-01-27 19:06:01] -rw------- 1 boinc boinc    982342 Jan 27 19:06 log.48310826._010327.job.log.1
[2026-01-27 19:06:01] -rw------- 1 boinc boinc       357 Jan 27 19:06 output.list
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc       620 Jan 27 19:06 runtime_log
[2026-01-27 19:06:01] -rw------- 1 boinc boinc   1269760 Jan 27 19:06 result.tar.gz
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc      8896 Jan 27 19:06 runtime_log.err
[2026-01-27 19:06:01] -rw------- 1 boinc boinc       657 Jan 27 19:06 JxcLDmdm838nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk06KDmJcz6Gm.diag
[2026-01-27 19:06:01] -rw-r--r-- 1 boinc boinc     11834 Jan 27 19:06 stderr.txt
[2026-01-27 19:06:01] HITS file was successfully produced:
[2026-01-27 19:06:01] -rw------- 1 boinc boinc 182985820 Jan 27 19:05 shared/HITS.pool.root.1
[2026-01-27 19:06:01]  *** Contents of shared directory: ***
[2026-01-27 19:06:01] total 661184
[2026-01-27 19:06:01] -rw-r--r-- 2 boinc boinc 492172755 Jan 27 17:11 ATLAS.root_0
[2026-01-27 19:06:01] -rw-r--r-- 2 boinc boinc    597761 Jan 27 17:11 input.tar.gz
[2026-01-27 19:06:01] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:11 start_atlas.sh
[2026-01-27 19:06:01] -rw------- 1 boinc boinc 182985820 Jan 27 19:05 HITS.pool.root.1
[2026-01-27 19:06:01] -rw------- 1 boinc boinc   1269760 Jan 27 19:06 result.tar.gz
19:06:03 (1843163): run_atlas exited; CPU time 13223.957898
19:06:03 (1843163): called boinc_finish(0)

</stderr_txt>
]]>

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