Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:52:20 (9531): wrapper (7.7.26015): starting
12:52:20 (9531): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 12:52:20] Arguments: --nthreads 8
[2026-01-27 12:52:20] Threads: 8
[2026-01-27 12:52:20] Checking for CVMFS
[2026-01-27 12:52:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:52:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:52:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:52:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:52:23] 2.11.2.0 5913 61282 135060 155583 2 54 17236676 25165824 899 130560 0 21776363 99.804 16423240 2555 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 12:52:23] CVMFS is ok
[2026-01-27 12:52:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:52:23] Checking for apptainer binary...
[2026-01-27 12:52:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:52:23] Running /usr/bin/apptainer --version
[2026-01-27 12:52:23] apptainer version 1.3.2-1.el7
[2026-01-27 12:52:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:52:33] cg-vwn443.simple-grid.lan
[2026-01-27 12:52:33] apptainer works
[2026-01-27 12:52:33] Set ATHENA_PROC_NUMBER=8
[2026-01-27 12:52:33] Set ATHENA_CORE_NUMBER=8
[2026-01-27 12:52:33] Starting ATLAS job with PandaID=6983345428
[2026-01-27 12:52:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 17:17:43]  *** The last 200 lines of the pilot log: ***
[2026-01-27 17:17:43] 2026-01-27 16:16:40,263 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6983345428/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,263 | INFO     | extracted standard info from prmon json
[2026-01-27 17:17:43] 2026-01-27 16:16:40,264 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 17:17:43] 2026-01-27 16:16:40,264 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 17:17:43] 2026-01-27 16:16:40,264 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 17:17:43] 2026-01-27 16:16:40,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 17:17:43] 2026-01-27 16:16:40,270 | INFO     | fitting pss+swap vs Time
[2026-01-27 17:17:43] 2026-01-27 16:16:40,270 | INFO     | sum of square deviations: 4787066500.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,273 | INFO     | sum of deviations: 77119030827.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,273 | INFO     | mean x: 1769523018.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,273 | INFO     | mean y: 2431338.887550201
[2026-01-27 17:17:43] 2026-01-27 16:16:40,273 | INFO     | intersect: -28504358816.258213
[2026-01-27 17:17:43] 2026-01-27 16:16:40,274 | INFO     | chi2: 7.962616005210138
[2026-01-27 17:17:43] 2026-01-27 16:16:40,274 | INFO     | sum of square deviations: 4504437945.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,276 | INFO     | sum of deviations: 109355467349.5
[2026-01-27 17:17:43] 2026-01-27 16:16:40,277 | INFO     | mean x: 1769522865.5
[2026-01-27 17:17:43] 2026-01-27 16:16:40,277 | INFO     | mean y: 2448509.4385245903
[2026-01-27 17:17:43] 2026-01-27 16:16:40,277 | INFO     | intersect: -42956740251.76416
[2026-01-27 17:17:43] 2026-01-27 16:16:40,277 | INFO     | chi2: 6.412016262257816
[2026-01-27 17:17:43] 2026-01-27 16:16:40,278 | INFO     | current chi2=6.412016262257816 (change=19.473496423006285 %)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,281 | INFO     | right removable region: 243
[2026-01-27 17:17:43] 2026-01-27 16:16:40,281 | INFO     | sum of square deviations: 4504437945.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,283 | INFO     | sum of deviations: -5046978289.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,284 | INFO     | mean x: 1769523170.5
[2026-01-27 17:17:43] 2026-01-27 16:16:40,284 | INFO     | mean y: 2475631.87704918
[2026-01-27 17:17:43] 2026-01-27 16:16:40,284 | INFO     | intersect: 1985130323.1930254
[2026-01-27 17:17:43] 2026-01-27 16:16:40,284 | INFO     | chi2: 3.561613390098297
[2026-01-27 17:17:43] 2026-01-27 16:16:40,285 | INFO     | current chi2=3.561613390098297 (change=55.27081316281176 %)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,285 | INFO     | sum of square deviations: 4233158440.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,287 | INFO     | sum of deviations: -54245585472.99999
[2026-01-27 17:17:43] 2026-01-27 16:16:40,287 | INFO     | mean x: 1769523323.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,287 | INFO     | mean y: 2503179.1966527198
[2026-01-27 17:17:43] 2026-01-27 16:16:40,288 | INFO     | intersect: 22677966435.484188
[2026-01-27 17:17:43] 2026-01-27 16:16:40,288 | INFO     | chi2: 1.8866118337484965
[2026-01-27 17:17:43] 2026-01-27 16:16:40,288 | INFO     | current chi2=1.8866118337484965 (change=47.029291865492794 %)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,289 | INFO     | sum of square deviations: 3972995422.5
[2026-01-27 17:17:43] 2026-01-27 16:16:40,291 | INFO     | sum of deviations: -58765490639.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,291 | INFO     | mean x: 1769523475.5
[2026-01-27 17:17:43] 2026-01-27 16:16:40,291 | INFO     | mean y: 2505812.2905982905
[2026-01-27 17:17:43] 2026-01-27 16:16:40,291 | INFO     | intersect: 26175935221.76936
[2026-01-27 17:17:43] 2026-01-27 16:16:40,292 | INFO     | chi2: 1.8545467695858604
[2026-01-27 17:17:43] 2026-01-27 16:16:40,292 | INFO     | current chi2=1.8545467695858604 (change=1.6996111011837682 %)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,292 | INFO     | left removable region: 30
[2026-01-27 17:17:43] 2026-01-27 16:16:40,292 | INFO     | sum of square deviations: 2996454322.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,294 | INFO     | sum of deviations: -2695923181.9999995
[2026-01-27 17:17:43] 2026-01-27 16:16:40,294 | INFO     | mean x: 1769523750.0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,294 | INFO     | mean y: 2510218.084507042
[2026-01-27 17:17:43] 2026-01-27 16:16:40,295 | INFO     | intersect: 1594558547.9053583
[2026-01-27 17:17:43] 2026-01-27 16:16:40,295 | INFO     | chi2: 0.0614110366534988
[2026-01-27 17:17:43] 2026-01-27 16:16:40,295 | INFO     | current memory leak: -0.90 B/s (using 213 data points, chi2=0.06)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,296 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,296 | INFO     | ..............................
[2026-01-27 17:17:43] 2026-01-27 16:16:40,296 | INFO     | . Timing measurements:
[2026-01-27 17:17:43] 2026-01-27 16:16:40,296 | INFO     | . get job = 0 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,296 | INFO     | . initial setup = 130 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,297 | INFO     | . payload setup = 159 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,297 | INFO     | . stage-in = 0 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,297 | INFO     | . payload execution = 15267 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,297 | INFO     | . stage-out = 6 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,297 | INFO     | . log creation = 1 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,297 | INFO     | ..............................
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | 
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | job summary report
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | --------------------------------------------------
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | PanDA job id: 6983345428
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | task id: 48317872
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | errors: (none)
[2026-01-27 17:17:43] 2026-01-27 16:16:40,441 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | pilot state: finished 
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | transexitcode: 0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | exeerrorcode: 0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | exeerrordiag: 
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | exitcode: 0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | exitmsg: OK
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | cpuconsumptiontime: 57406 s
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | nevents: 400
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | neventsw: 0
[2026-01-27 17:17:43] 2026-01-27 16:16:40,442 | INFO     | pid: 17994
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | pgrp: 17994
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | corecount: 8
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | event service: False
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | sizes: {0: 2283142, 1: 2283827, 2: 2284288, 13: 2284288, 15431: 2315388, 15438: 2324386, 15439: 2324570, 15440: 2324764}
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | --------------------------------------------------
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | 
[2026-01-27 17:17:43] 2026-01-27 16:16:40,443 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-27 17:17:43] 2026-01-27 16:16:40,456 | INFO     | time since job start (15453s) is within the limit (349056.0s)
[2026-01-27 17:17:43] 2026-01-27 16:16:41,004 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,004 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,005 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 17:17:43] 2026-01-27 16:16:41,006 | INFO     | job 6983345428 has completed (purged errors)
[2026-01-27 17:17:43] 2026-01-27 16:16:41,007 | INFO     | overall cleanup function is called
[2026-01-27 17:17:43] 2026-01-27 16:16:41,556 | INFO     | PID=13532 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 17:17:43] 2026-01-27 16:16:41,556 | INFO     | .. there are 2 such processes running
[2026-01-27 17:17:43] 2026-01-27 16:16:42,016 | INFO     | --- collectZombieJob: --- 10, [17994]
[2026-01-27 17:17:43] 2026-01-27 16:16:42,016 | INFO     | zombie collector waiting for pid 17994
[2026-01-27 17:17:43] 2026-01-27 16:16:42,016 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 17:17:43] 2026-01-27 16:16:42,016 | INFO     | collected zombie processes
[2026-01-27 17:17:43] 2026-01-27 16:16:42,016 | INFO     | will attempt to kill all subprocesses of pid=17994
[2026-01-27 17:17:43] 2026-01-27 16:16:42,096 | INFO     | process IDs to be killed: [17994] (in reverse order)
[2026-01-27 17:17:43] 2026-01-27 16:16:43,138 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 17:17:43] 2026-01-27 16:16:43,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 17:17:43] 2026-01-27 16:16:43,141 | INFO     | did not find any defunct processes belonging to 17994
[2026-01-27 17:17:43] 2026-01-27 16:16:43,143 | INFO     | did not find any defunct processes belonging to 17994
[2026-01-27 17:17:43] 2026-01-27 16:16:43,144 | INFO     | ready for new job
[2026-01-27 17:17:43] 2026-01-27 16:16:43,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 17:17:43] 2026-01-27 16:16:43,146 | INFO     | **************************************
[2026-01-27 17:17:43] 2026-01-27 16:16:43,146 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 17:17:43] 2026-01-27 16:16:43,146 | INFO     | **************************************
[2026-01-27 17:17:43] 2026-01-27 16:16:43,146 | INFO     | 
[2026-01-27 17:17:43] 2026-01-27 16:16:43,147 | INFO     | pilot is running in a VM
[2026-01-27 17:17:43] 2026-01-27 16:16:43,147 | INFO     | architecture information:
[2026-01-27 17:17:43] 2026-01-27 16:16:43,154 | INFO     | executing command: cat /etc/os-release
[2026-01-27 17:17:43] 2026-01-27 16:16:43,355 | INFO     | cat /etc/os-release:
[2026-01-27 17:17:43] NAME="CentOS Linux"
[2026-01-27 17:17:43] VERSION="7 (Core)"
[2026-01-27 17:17:43] ID="centos"
[2026-01-27 17:17:43] ID_LIKE="rhel fedora"
[2026-01-27 17:17:43] VERSION_ID="7"
[2026-01-27 17:17:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 17:17:43] ANSI_COLOR="0;31"
[2026-01-27 17:17:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 17:17:43] HOME_URL="https://www.centos.org/"
[2026-01-27 17:17:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 17:17:43] 
[2026-01-27 17:17:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 17:17:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 17:17:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 17:17:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 17:17:43] 
[2026-01-27 17:17:43] 2026-01-27 16:16:43,356 | INFO     | **************************************
[2026-01-27 17:17:43] 2026-01-27 16:16:43,858 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-27 17:17:43] 2026-01-27 16:16:44,007 | INFO     | sufficient remaining disk space (495739469824 B)
[2026-01-27 17:17:43] 2026-01-27 16:16:44,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 17:17:43] 2026-01-27 16:16:44,008 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 17:17:43] 2026-01-27 16:16:44,008 | INFO     | update_server=False
[2026-01-27 17:17:43] 2026-01-27 16:16:44,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 17:17:43] 2026-01-27 16:16:44,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 17:17:43] 2026-01-27 16:16:44,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:17:43] 2026-01-27 16:16:44,343 | INFO     | aborting loop
[2026-01-27 17:17:43] 2026-01-27 16:16:44,690 | INFO     | all data control threads have been joined
[2026-01-27 17:17:43] 2026-01-27 16:16:44,907 | INFO     | all payload control threads have been joined
[2026-01-27 17:17:43] 2026-01-27 16:16:45,014 | INFO     | [job] retrieve thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:45,349 | INFO     | [job] job monitor thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:45,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:17:43] 2026-01-27 16:16:45,543 | INFO     | all job control threads have been joined
[2026-01-27 17:17:43] 2026-01-27 16:16:45,550 | INFO     | [payload] validate_post thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:45,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 17:17:43] 2026-01-27 16:16:45,697 | INFO     | [data] control thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:45,883 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:45,913 | INFO     | [payload] control thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,073 | INFO     | [data] copytool_out thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,114 | INFO     | [job] validate thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,115 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,128 | INFO     | [payload] failed_post thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,131 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,168 | INFO     | [data] copytool_in thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,354 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,460 | INFO     | [job] queue monitor thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:46,549 | INFO     | [job] control thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:16:49,598 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 17:17:43] 2026-01-27 16:17:13,669 | INFO     | PID=13532 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 17:17:43] 2026-01-27 16:17:13,670 | INFO     | .. there are 2 such processes running
[2026-01-27 17:17:43] 2026-01-27 16:17:13,670 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 17:17:43] 2026-01-27 16:17:13,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 17:17:43] 2026-01-27 16:17:13,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 17:17:43] 2026-01-27 16:17:33,391 | INFO     | [monitor] cgroup control has ended
[2026-01-27 17:17:43] 2026-01-27 16:17:33,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655762786112)>', '<ExcThread(monitor, started 139654946875136)>']
[2026-01-27 17:17:43] 2026-01-27 16:17:33,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 17:17:43] 2026-01-27 16:17:33,790 | INFO     | [monitor] control thread has ended
[2026-01-27 17:17:43] 2026-01-27 16:17:38,490 | INFO     | all workflow threads have been joined
[2026-01-27 17:17:43] 2026-01-27 16:17:38,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 17:17:43] 2026-01-27 16:17:38,490 | INFO     | traces error code: 0
[2026-01-27 17:17:43] 2026-01-27 16:17:38,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 17:17:43] 2026-01-27 16:17:38,755 [wrapper] ==== pilot stdout END ====
[2026-01-27 17:17:43] 2026-01-27 16:17:38,759 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 17:17:43] 2026-01-27 16:17:38,762 [wrapper] pilotpid: 13532
[2026-01-27 17:17:43] 2026-01-27 16:17:38,875 [wrapper] Pilot exit status: 0
[2026-01-27 17:17:43] 2026-01-27 16:17:39,393 [wrapper] pandaids: 6983345428
[2026-01-27 17:17:43] 2026-01-27 16:17:40,185 [wrapper] cleanup supervisor_pilot 23917 13533
[2026-01-27 17:17:43] 2026-01-27 16:17:40,282 [wrapper] Test setup, not cleaning
[2026-01-27 17:17:43] 2026-01-27 16:17:40,426 [wrapper] apfmon messages muted
[2026-01-27 17:17:43] 2026-01-27 16:17:40,535 [wrapper] ==== wrapper stdout END ====
[2026-01-27 17:17:43] 2026-01-27 16:17:40,666 [wrapper] ==== wrapper stderr END ====
[2026-01-27 17:17:43]  *** Error codes and diagnostics ***
[2026-01-27 17:17:43]     "exeErrorCode": 0,
[2026-01-27 17:17:43]     "exeErrorDiag": "",
[2026-01-27 17:17:43]     "pilotErrorCode": 0,
[2026-01-27 17:17:43]     "pilotErrorDiag": "",
[2026-01-27 17:17:43]  *** Listing of results directory ***
[2026-01-27 17:17:43] total 665964
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc      5111 Jan 25 21:48 queuedata.json
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-27 17:17:43] -rwx------. 1 boinc boinc     36322 Jan 25 21:49 runpilot2-wrapper.sh
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc       100 Jan 27 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 17:17:43] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 12:52 run_atlas
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc       105 Jan 27 12:52 job.xml
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc      6390 Jan 27 12:52 init_data.xml
[2026-01-27 17:17:43] -rw-r--r--. 2 boinc boinc 489702950 Jan 27 12:52 EVNT.48317869._000029.pool.root.1
[2026-01-27 17:17:43] -rw-r--r--. 2 boinc boinc     15845 Jan 27 12:52 start_atlas.sh
[2026-01-27 17:17:43] drwxrwx--x. 2 boinc boinc        68 Jan 27 12:52 shared
[2026-01-27 17:17:43] -rw-r--r--. 2 boinc boinc    597752 Jan 27 12:52 input.tar.gz
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc         0 Jan 27 12:52 boinc_lockfile
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc      2514 Jan 27 12:52 pandaJob.out
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc       415 Jan 27 12:58 workernode_map.json
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc   1002853 Jan 27 12:59 agis_schedconf.cvmfs.json
[2026-01-27 17:17:43] drwx------. 5 boinc boinc      4096 Jan 27 12:59 pilot3
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc 182961011 Jan 27 17:14 HITS.48317872._001451.pool.root.1
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc       532 Jan 27 17:15 boinc_task_state.xml
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc        95 Jan 27 17:16 pilot_heartbeat.json
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc      1011 Jan 27 17:16 memory_monitor_summary.json
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc   1516246 Jan 27 17:16 agis_ddmendpoints.agis.ALL.json
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc    512682 Jan 27 17:16 log.48317872._001451.job.log.tgz.1
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc      6317 Jan 27 17:16 heartbeat.json
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc      4880 Jan 27 17:17 pilotlog.txt
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc      8192 Jan 27 17:17 boinc_mmap_file
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc        28 Jan 27 17:17 wrapper_checkpoint.txt
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc   2167783 Jan 27 17:17 log.48317872._001451.job.log.1
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc       357 Jan 27 17:17 output.list
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc       620 Jan 27 17:17 runtime_log
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc   2693120 Jan 27 17:17 result.tar.gz
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc       656 Jan 27 17:17 yQgNDmqDM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1l1KDmcwyUFm.diag
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc      8816 Jan 27 17:17 runtime_log.err
[2026-01-27 17:17:43] -rw-r--r--. 1 boinc boinc     20818 Jan 27 17:17 stderr.txt
[2026-01-27 17:17:43] HITS file was successfully produced:
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc 182961011 Jan 27 17:14 shared/HITS.pool.root.1
[2026-01-27 17:17:43]  *** Contents of shared directory: ***
[2026-01-27 17:17:43] total 660136
[2026-01-27 17:17:43] -rw-r--r--. 2 boinc boinc 489702950 Jan 27 12:52 ATLAS.root_0
[2026-01-27 17:17:43] -rw-r--r--. 2 boinc boinc     15845 Jan 27 12:52 start_atlas.sh
[2026-01-27 17:17:43] -rw-r--r--. 2 boinc boinc    597752 Jan 27 12:52 input.tar.gz
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc 182961011 Jan 27 17:14 HITS.pool.root.1
[2026-01-27 17:17:43] -rw-------. 1 boinc boinc   2693120 Jan 27 17:17 result.tar.gz
17:17:45 (9531): run_atlas exited; CPU time 57571.140979
17:17:45 (9531): called boinc_finish(0)

</stderr_txt>
]]>

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