Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:13:58 (1833798): wrapper (7.7.26015): starting
17:13:58 (1833798): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 17:13:58] Arguments: --nthreads 2
[2026-01-27 17:13:58] Threads: 2
[2026-01-27 17:13:58] Checking for CVMFS
[2026-01-27 17:13:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 17:13:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 17:13:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 17:13:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 17:13:58] 2.9.2.0 843047 9868 63220 155590 3 49 24710549 36864001 0 130560 0 2962248 99.980 320649 7531 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 17:13:58] CVMFS is ok
[2026-01-27 17:13:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 17:13:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 17:13:58] Further information can be found at the LHC@home message board.
[2026-01-27 17:13:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 17:13:58] Checking for apptainer binary...
[2026-01-27 17:13:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 17:13:58] Running /usr/bin/apptainer --version
[2026-01-27 17:13:58] apptainer version 1.4.1-1.1
[2026-01-27 17:13:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 17:13:58] thA331
[2026-01-27 17:13:58] apptainer works
[2026-01-27 17:13:58] Set ATHENA_PROC_NUMBER=2
[2026-01-27 17:13:58] Set ATHENA_CORE_NUMBER=2
[2026-01-27 17:13:58] Starting ATLAS job with PandaID=6983772644
[2026-01-27 17:13:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 19:23:36]  *** The last 200 lines of the pilot log: ***
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | job 6983772644 has completed (purged errors)
[2026-01-27 19:23:36] 2026-01-27 18:22:31,998 | INFO     | overall cleanup function is called
[2026-01-27 19:23:36] 2026-01-27 18:22:33,000 | INFO     | --- collectZombieJob: --- 10, [1842225]
[2026-01-27 19:23:36] 2026-01-27 18:22:33,000 | INFO     | zombie collector waiting for pid 1842225
[2026-01-27 19:23:36] 2026-01-27 18:22:33,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 19:23:36] 2026-01-27 18:22:33,001 | INFO     | collected zombie processes
[2026-01-27 19:23:36] 2026-01-27 18:22:33,001 | INFO     | will attempt to kill all subprocesses of pid=1842225
[2026-01-27 19:23:36] 2026-01-27 18:22:33,035 | INFO     | process IDs to be killed: [1842225] (in reverse order)
[2026-01-27 19:23:36] 2026-01-27 18:22:33,055 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 19:23:36] 2026-01-27 18:22:33,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 19:23:36] 2026-01-27 18:22:33,056 | INFO     | did not find any defunct processes belonging to 1842225
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | did not find any defunct processes belonging to 1842225
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | ready for new job
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | **************************************
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | **************************************
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | 
[2026-01-27 19:23:36] 2026-01-27 18:22:33,057 | INFO     | architecture information:
[2026-01-27 19:23:36] 2026-01-27 18:22:33,058 | INFO     | executing command: cat /etc/os-release
[2026-01-27 19:23:36] 2026-01-27 18:22:33,066 | INFO     | cat /etc/os-release:
[2026-01-27 19:23:36] NAME="CentOS Linux"
[2026-01-27 19:23:36] VERSION="7 (Core)"
[2026-01-27 19:23:36] ID="centos"
[2026-01-27 19:23:36] ID_LIKE="rhel fedora"
[2026-01-27 19:23:36] VERSION_ID="7"
[2026-01-27 19:23:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 19:23:36] ANSI_COLOR="0;31"
[2026-01-27 19:23:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 19:23:36] HOME_URL="https://www.centos.org/"
[2026-01-27 19:23:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 19:23:36] 
[2026-01-27 19:23:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 19:23:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 19:23:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 19:23:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 19:23:36] 
[2026-01-27 19:23:36] 2026-01-27 18:22:33,066 | INFO     | **************************************
[2026-01-27 19:23:36] 2026-01-27 18:22:33,569 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 19:23:36] 2026-01-27 18:22:33,581 | INFO     | sufficient remaining disk space (235291017216 B)
[2026-01-27 19:23:36] 2026-01-27 18:22:33,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 19:23:36] 2026-01-27 18:22:33,581 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 19:23:36] 2026-01-27 18:22:33,581 | INFO     | update_server=False
[2026-01-27 19:23:36] 2026-01-27 18:22:33,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 19:23:36] 2026-01-27 18:22:33,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:23:36] 2026-01-27 18:22:33,785 | INFO     | all data control threads have been joined
[2026-01-27 19:23:36] 2026-01-27 18:22:33,866 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 19:23:36] 2026-01-27 18:22:33,867 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 19:23:36] 2026-01-27 18:22:33,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:23:36] 2026-01-27 18:22:33,867 | INFO     | will abort loop
[2026-01-27 19:23:36] 2026-01-27 18:22:34,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 19:23:36] 2026-01-27 18:22:34,152 | INFO     | all payload control threads have been joined
[2026-01-27 19:23:36] 2026-01-27 18:22:34,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 19:23:36] 2026-01-27 18:22:34,587 | INFO     | [job] retrieve thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:34,588 | INFO     | [job] queue monitor thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:34,696 | INFO     | all job control threads have been joined
[2026-01-27 19:23:36] 2026-01-27 18:22:34,772 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:34,786 | INFO     | [data] copytool_in thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:34,791 | INFO     | [data] control thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:34,873 | INFO     | [job] job monitor thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:35,158 | INFO     | [payload] control thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:35,200 | INFO     | [payload] validate_post thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:35,702 | INFO     | [job] control thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:35,915 | INFO     | [job] validate thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:35,923 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:36,011 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:36,033 | INFO     | [data] copytool_out thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:36,123 | INFO     | [payload] failed_post thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:38,559 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:22:43,634 | INFO     | job.realtimelogging is not enabled
[2026-01-27 19:23:36] 2026-01-27 18:22:44,640 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 19:23:36] 2026-01-27 18:23:04,203 | INFO     | PID=1837820 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 19:23:36] 2026-01-27 18:23:04,203 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 19:23:36] 2026-01-27 18:23:04,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 19:23:36] 2026-01-27 18:23:04,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 19:23:36] 2026-01-27 18:23:30,563 | INFO     | [monitor] cgroup control has ended
[2026-01-27 19:23:36] 2026-01-27 18:23:30,914 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139901275903808)>', '<ExcThread(monitor, started 139900548531968)>']
[2026-01-27 19:23:36] 2026-01-27 18:23:31,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 19:23:36] 2026-01-27 18:23:31,341 | INFO     | [monitor] control thread has ended
[2026-01-27 19:23:36] 2026-01-27 18:23:35,940 | INFO     | all workflow threads have been joined
[2026-01-27 19:23:36] 2026-01-27 18:23:35,940 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 19:23:36] 2026-01-27 18:23:35,941 | INFO     | traces error code: 0
[2026-01-27 19:23:36] 2026-01-27 18:23:35,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 19:23:36] 2026-01-27 18:23:35,985 [wrapper] ==== pilot stdout END ====
[2026-01-27 19:23:36] 2026-01-27 18:23:35,987 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 19:23:36] 2026-01-27 18:23:35,989 [wrapper] pilotpid: 1837820
[2026-01-27 19:23:36] 2026-01-27 18:23:35,992 [wrapper] Pilot exit status: 0
[2026-01-27 19:23:36] 2026-01-27 18:23:35,998 [wrapper] pandaids: 6983772644
[2026-01-27 19:23:36] 2026-01-27 18:23:36,011 [wrapper] cleanup supervisor_pilot 1847102 1837821
[2026-01-27 19:23:36] 2026-01-27 18:23:36,013 [wrapper] Test setup, not cleaning
[2026-01-27 19:23:36] 2026-01-27 18:23:36,015 [wrapper] apfmon messages muted
[2026-01-27 19:23:36] 2026-01-27 18:23:36,017 [wrapper] ==== wrapper stdout END ====
[2026-01-27 19:23:36] 2026-01-27 18:23:36,019 [wrapper] ==== wrapper stderr END ====
[2026-01-27 19:23:36]  *** Error codes and diagnostics ***
[2026-01-27 19:23:36]     "exeErrorCode": 0,
[2026-01-27 19:23:36]     "exeErrorDiag": "",
[2026-01-27 19:23:36]     "pilotErrorCode": 0,
[2026-01-27 19:23:36]     "pilotErrorDiag": "",
[2026-01-27 19:23:36]  *** Listing of results directory ***
[2026-01-27 19:23:36] total 680152
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:16 pilot3.tar.gz
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:17 queuedata.json
[2026-01-27 19:23:36] -rwx------ 1 boinc boinc     36322 Jan 26 04:17 runpilot2-wrapper.sh
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc       100 Jan 27 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 19:23:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 17:13 run_atlas
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc       105 Jan 27 17:13 job.xml
[2026-01-27 19:23:36] -rw-r--r-- 2 boinc boinc 501471148 Jan 27 17:13 EVNT.48317869._000038.pool.root.1
[2026-01-27 19:23:36] -rw-r--r-- 2 boinc boinc    597754 Jan 27 17:13 input.tar.gz
[2026-01-27 19:23:36] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:13 start_atlas.sh
[2026-01-27 19:23:36] drwxrwx--x 2 boinc boinc      4096 Jan 27 17:13 shared
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:13 boinc_setup_complete
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc      6206 Jan 27 17:13 init_data.xml
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:13 boinc_lockfile
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc      2514 Jan 27 17:13 pandaJob.out
[2026-01-27 19:23:36] -rw------- 1 boinc boinc   1005162 Jan 27 17:14 agis_schedconf.cvmfs.json
[2026-01-27 19:23:36] -rw------- 1 boinc boinc   1516246 Jan 27 17:14 agis_ddmendpoints.agis.ALL.json
[2026-01-27 19:23:36] -rw------- 1 boinc boinc       418 Jan 27 17:14 workernode_map.json
[2026-01-27 19:23:36] drwx------ 5 boinc boinc      4096 Jan 27 17:14 pilot3
[2026-01-27 19:23:36] -rw------- 1 boinc boinc 188246691 Jan 27 19:22 HITS.48317872._001899.pool.root.1
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc       530 Jan 27 19:22 boinc_task_state.xml
[2026-01-27 19:23:36] -rw------- 1 boinc boinc      1010 Jan 27 19:22 memory_monitor_summary.json
[2026-01-27 19:23:36] -rw------- 1 boinc boinc    306620 Jan 27 19:22 log.48317872._001899.job.log.tgz.1
[2026-01-27 19:23:36] -rw------- 1 boinc boinc      6285 Jan 27 19:22 heartbeat.json
[2026-01-27 19:23:36] -rw------- 1 boinc boinc        95 Jan 27 19:23 pilot_heartbeat.json
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc      8192 Jan 27 19:23 boinc_mmap_file
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc        27 Jan 27 19:23 wrapper_checkpoint.txt
[2026-01-27 19:23:36] -rw------- 1 boinc boinc      5006 Jan 27 19:23 pilotlog.txt
[2026-01-27 19:23:36] -rw------- 1 boinc boinc   1104418 Jan 27 19:23 log.48317872._001899.job.log.1
[2026-01-27 19:23:36] -rw------- 1 boinc boinc       357 Jan 27 19:23 output.list
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc       620 Jan 27 19:23 runtime_log
[2026-01-27 19:23:36] -rw------- 1 boinc boinc   1433600 Jan 27 19:23 result.tar.gz
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc      8896 Jan 27 19:23 runtime_log.err
[2026-01-27 19:23:36] -rw------- 1 boinc boinc       658 Jan 27 19:23 KZUKDmxHS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmt8KDm69oV8n.diag
[2026-01-27 19:23:36] -rw-r--r-- 1 boinc boinc     12668 Jan 27 19:23 stderr.txt
[2026-01-27 19:23:36] HITS file was successfully produced:
[2026-01-27 19:23:36] -rw------- 1 boinc boinc 188246691 Jan 27 19:22 shared/HITS.pool.root.1
[2026-01-27 19:23:36]  *** Contents of shared directory: ***
[2026-01-27 19:23:36] total 675564
[2026-01-27 19:23:36] -rw-r--r-- 2 boinc boinc 501471148 Jan 27 17:13 ATLAS.root_0
[2026-01-27 19:23:36] -rw-r--r-- 2 boinc boinc    597754 Jan 27 17:13 input.tar.gz
[2026-01-27 19:23:36] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:13 start_atlas.sh
[2026-01-27 19:23:36] -rw------- 1 boinc boinc 188246691 Jan 27 19:22 HITS.pool.root.1
[2026-01-27 19:23:36] -rw------- 1 boinc boinc   1433600 Jan 27 19:23 result.tar.gz
19:23:37 (1833798): run_atlas exited; CPU time 14988.378677
19:23:37 (1833798): called boinc_finish(0)

</stderr_txt>
]]>

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