Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:28:56 (1553): wrapper (7.7.26015): starting
07:28:56 (1553): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 07:28:56] Arguments: --nthreads 8
[2026-01-27 07:28:56] Threads: 8
[2026-01-27 07:28:56] Checking for CVMFS
[2026-01-27 07:28:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 07:28:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 07:28:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 07:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 07:28:57] 2.11.0.0 4259 155008 76616 155575 1 188 3184780 4096001 2751 130560 2 5740825 99.224 9697564 507 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-27 07:28:57] CVMFS is ok
[2026-01-27 07:28:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 07:28:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 07:28:57] Further information can be found at the LHC@home message board.
[2026-01-27 07:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 07:28:57] Checking for apptainer binary...
[2026-01-27 07:28:57] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-27 07:28:57] apptainer is not installed, using version from CVMFS
[2026-01-27 07:28:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 07:28:57] WARNING: Environment variable TMPDIR already has value [/tmp/job_11053914/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node282
[2026-01-27 07:28:57] apptainer works
[2026-01-27 07:28:57] Set ATHENA_PROC_NUMBER=8
[2026-01-27 07:28:57] Set ATHENA_CORE_NUMBER=8
[2026-01-27 07:28:57] Starting ATLAS job with PandaID=6983467837
[2026-01-27 07:28:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11053914/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:16:14]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:16:14]  domain=
[2026-01-27 08:16:14]  filesize=314616
[2026-01-27 08:16:14]  filetype=log
[2026-01-27 08:16:14]  guid=0140ce58-91de-4d56-b04a-03ea982fadf1
[2026-01-27 08:16:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 08:16:14]  is_altstaged=None
[2026-01-27 08:16:14]  is_tar=False
[2026-01-27 08:16:14]  lfn=log.48318034._001875.job.log.tgz.1
[2026-01-27 08:16:14]  mtime=0
[2026-01-27 08:16:14]  protocol_id=None
[2026-01-27 08:16:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 08:16:14]  replicas=None
[2026-01-27 08:16:14]  scope=mc23_13p6TeV
[2026-01-27 08:16:14]  status=None
[2026-01-27 08:16:14]  status_code=0
[2026-01-27 08:16:14]  storage_token=
[2026-01-27 08:16:14]  surl=/tmp/job_11053914/atlas/pilot/slots/0/PanDA_Pilot-6983467837/log.48318034._001875.job.log.tgz.1
[2026-01-27 08:16:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/71/log.48318034._001875.job.log.tgz.1
[2026-01-27 08:16:14]  workdir=None
[2026-01-27 08:16:14] ]
[2026-01-27 08:16:14] 2026-01-27 07:15:26,297 | INFO     | transferring file log.48318034._001875.job.log.tgz.1 from /tmp/job_11053914/atlas/pilot/slots/0/PanDA_Pilot-6983467837/log.48318034._001875.job.log.tgz.1 to /tmp/j
[2026-01-27 08:16:14] 2026-01-27 07:15:26,297 | INFO     | executing command: /usr/bin/env mv /tmp/job_11053914/atlas/pilot/slots/0/PanDA_Pilot-6983467837/log.48318034._001875.job.log.tgz.1 /tmp/job_11053914/atlas/pilot/sl
[2026-01-27 08:16:14] 2026-01-27 07:15:26,305 | INFO     | adding to output.list: log.48318034._001875.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/71/log.48318034._001875.job.log.tg
[2026-01-27 08:16:14] 2026-01-27 07:15:26,305 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 08:16:14] 2026-01-27 07:15:26,305 | INFO     | summary of transferred files:
[2026-01-27 08:16:14] 2026-01-27 07:15:26,305 | INFO     |  -- lfn=log.48318034._001875.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 08:16:14] 2026-01-27 07:15:26,306 | INFO     | stage-out finished correctly
[2026-01-27 08:16:14] 2026-01-27 07:15:26,838 | INFO     | monitor loop #211: job 0:6983467837 is in state 'finished'
[2026-01-27 08:16:14] 2026-01-27 07:15:26,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 08:16:14] 2026-01-27 07:15:27,095 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 08:16:14] 2026-01-27 07:15:27,475 | INFO     | time since job start (2784s) is within the limit (349056.0s)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,489 | INFO     | job 6983467837 has state=finished
[2026-01-27 08:16:14] 2026-01-27 07:15:28,489 | INFO     | preparing for final server update for job 6983467837 in state='finished'
[2026-01-27 08:16:14] 2026-01-27 07:15:28,490 | INFO     | reading metadata from: /tmp/job_11053914/atlas/pilot/slots/0/PanDA_Pilot-6983467837/jobReport.json
[2026-01-27 08:16:14] 2026-01-27 07:15:28,491 | INFO     | added worker_node to metadata from /tmp/job_11053914/atlas/pilot/slots/0/workernode_map.json
[2026-01-27 08:16:14] 2026-01-27 07:15:28,491 | INFO     | this job has now completed (state=finished)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,491 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,491 | INFO     | log transfer has been attempted: DONE
[2026-01-27 08:16:14] 2026-01-27 07:15:28,491 | INFO     | job 6983467837 has finished - writing final server update
[2026-01-27 08:16:14] 2026-01-27 07:15:28,491 | INFO     | total number of processed events: 400 (read)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,510 | INFO     | using path: /tmp/job_11053914/atlas/pilot/slots/0/PanDA_Pilot-6983467837/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,510 | INFO     | extracted standard info from prmon json
[2026-01-27 08:16:14] 2026-01-27 07:15:28,510 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 08:16:14] 2026-01-27 07:15:28,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 08:16:14] 2026-01-27 07:15:28,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 08:16:14] 2026-01-27 07:15:28,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | fitting pss+swap vs Time
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | sum of square deviations: 18381740.0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | sum of deviations: -815901718.0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | mean x: 1769496823.0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | mean y: 2688273.3076923075
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | intersect: 78544518256.82622
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | chi2: 0.02086163489917369
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | current memory leak: -44.39 B/s (using 39 data points, chi2=0.02)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | could have reported an average CPU frequency of 2863 MHz (5 samples)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | ..............................
[2026-01-27 08:16:14] 2026-01-27 07:15:28,511 | INFO     | . Timing measurements:
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . get job = 0 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . initial setup = 2 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . payload setup = 2 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . stage-in = 0 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . payload execution = 2765 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . stage-out = 0 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | . log creation = 0 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,512 | INFO     | ..............................
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | 
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | job summary report
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | --------------------------------------------------
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | PanDA job id: 6983467837
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | task id: 48318034
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | errors: (none)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | pilot state: finished 
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | transexitcode: 0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | exeerrorcode: 0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | exeerrordiag: 
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | exitcode: 0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | exitmsg: OK
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | cpuconsumptiontime: 20168 s
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | nevents: 400
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | neventsw: 0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | pid: 10202
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | pgrp: 10202
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | corecount: 8
[2026-01-27 08:16:14] 2026-01-27 07:15:28,560 | INFO     | event service: False
[2026-01-27 08:16:14] 2026-01-27 07:15:28,561 | INFO     | sizes: {0: 2284325, 10: 2284325, 2770: 2309765, 2771: 2318793, 2772: 2318849, 2773: 2319075}
[2026-01-27 08:16:14] 2026-01-27 07:15:28,561 | INFO     | --------------------------------------------------
[2026-01-27 08:16:14] 2026-01-27 07:15:28,561 | INFO     | 
[2026-01-27 08:16:14] 2026-01-27 07:15:28,561 | INFO     | executing command: ls -lF /tmp/job_11053914/atlas/pilot/slots/0
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,570 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | job 6983467837 has completed (purged errors)
[2026-01-27 08:16:14] 2026-01-27 07:15:28,571 | INFO     | overall cleanup function is called
[2026-01-27 08:16:14] 2026-01-27 07:15:29,577 | INFO     | --- collectZombieJob: --- 10, [10202]
[2026-01-27 08:16:14] 2026-01-27 07:15:29,577 | INFO     | zombie collector waiting for pid 10202
[2026-01-27 08:16:14] 2026-01-27 07:15:29,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:16:14] 2026-01-27 07:15:29,577 | INFO     | collected zombie processes
[2026-01-27 08:16:14] 2026-01-27 07:15:29,577 | INFO     | will attempt to kill all subprocesses of pid=10202
[2026-01-27 08:16:14] 2026-01-27 07:15:29,671 | INFO     | process IDs to be killed: [10202] (in reverse order)
[2026-01-27 08:16:14] 2026-01-27 07:15:29,703 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:16:14] 2026-01-27 07:15:29,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:16:14] 2026-01-27 07:15:29,706 | INFO     | did not find any defunct processes belonging to 10202
[2026-01-27 08:16:14] 2026-01-27 07:15:29,709 | INFO     | did not find any defunct processes belonging to 10202
[2026-01-27 08:16:14] 2026-01-27 07:15:29,709 | INFO     | ready for new job
[2026-01-27 08:16:14] 2026-01-27 07:15:29,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:16:14] 2026-01-27 07:15:29,710 | INFO     | **************************************
[2026-01-27 08:16:14] 2026-01-27 07:15:29,710 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:16:14] 2026-01-27 07:15:29,710 | INFO     | **************************************
[2026-01-27 08:16:14] 2026-01-27 07:15:29,710 | INFO     | 
[2026-01-27 08:16:14] 2026-01-27 07:15:29,724 | INFO     | architecture information:
[2026-01-27 08:16:14] 2026-01-27 07:15:29,724 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:16:14] 2026-01-27 07:15:29,730 | INFO     | cat /etc/os-release:
[2026-01-27 08:16:14] NAME="CentOS Linux"
[2026-01-27 08:16:14] VERSION="7 (Core)"
[2026-01-27 08:16:14] ID="centos"
[2026-01-27 08:16:14] ID_LIKE="rhel fedora"
[2026-01-27 08:16:14] VERSION_ID="7"
[2026-01-27 08:16:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:16:14] ANSI_COLOR="0;31"
[2026-01-27 08:16:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:16:14] HOME_URL="https://www.centos.org/"
[2026-01-27 08:16:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:16:14] 
[2026-01-27 08:16:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:16:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:16:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:16:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:16:14] 
[2026-01-27 08:16:14] 2026-01-27 07:15:29,731 | INFO     | **************************************
[2026-01-27 08:16:14] 2026-01-27 07:15:30,233 | INFO     | executing command: df -mP /tmp/job_11053914/atlas/pilot/slots/0
[2026-01-27 08:16:14] 2026-01-27 07:15:30,240 | INFO     | sufficient remaining disk space (226104442880 B)
[2026-01-27 08:16:14] 2026-01-27 07:15:30,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:16:14] 2026-01-27 07:15:30,241 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:16:14] 2026-01-27 07:15:30,241 | INFO     | update_server=False
[2026-01-27 08:16:14] 2026-01-27 07:15:30,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:16:14] 2026-01-27 07:15:30,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:16:14] 2026-01-27 07:15:30,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:16:14] 2026-01-27 07:15:30,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:16:14] 2026-01-27 07:15:30,346 | INFO     | aborting loop
[2026-01-27 08:16:14] 2026-01-27 07:15:30,463 | INFO     | all data control threads have been joined
[2026-01-27 08:16:14] 2026-01-27 07:15:30,470 | INFO     | job.realtimelogging is not enabled
[2026-01-27 08:16:14] 2026-01-27 07:15:30,998 | INFO     | all payload control threads have been joined
[2026-01-27 08:16:14] 2026-01-27 07:15:31,246 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:31,246 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:31,351 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:31,469 | INFO     | [data] control thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:31,475 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:31,549 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:31,705 | INFO     | all job control threads have been joined
[2026-01-27 08:16:14] 2026-01-27 07:15:32,003 | INFO     | [payload] control thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,133 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,246 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,290 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,425 | INFO     | [job] validate thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,451 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,575 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,626 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:32,710 | INFO     | [job] control thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:15:33,148 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:16:14] 2026-01-27 07:15:37,154 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:16:14] 2026-01-27 07:16:00,662 | INFO     | PID=5577 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 08:16:14] 2026-01-27 07:16:00,662 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:16:14] 2026-01-27 07:16:00,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:16:14] 2026-01-27 07:16:00,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:16:14] 2026-01-27 07:16:07,643 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:16:14] 2026-01-27 07:16:09,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063182592)>']
[2026-01-27 08:16:14] 2026-01-27 07:16:09,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:16:14] 2026-01-27 07:16:09,707 | INFO     | [monitor] control thread has ended
[2026-01-27 08:16:14] 2026-01-27 07:16:14,270 | INFO     | all workflow threads have been joined
[2026-01-27 08:16:14] 2026-01-27 07:16:14,270 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:16:14] 2026-01-27 07:16:14,270 | INFO     | traces error code: 0
[2026-01-27 08:16:14] 2026-01-27 07:16:14,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:16:14] 2026-01-27 07:16:14,321 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:16:14] 2026-01-27 07:16:14,323 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:16:14] 2026-01-27 07:16:14,324 [wrapper] pilotpid: 5577
[2026-01-27 08:16:14] 2026-01-27 07:16:14,325 [wrapper] Pilot exit status: 0
[2026-01-27 08:16:14] 2026-01-27 07:16:14,329 [wrapper] pandaids: 6983467837
[2026-01-27 08:16:14] 2026-01-27 07:16:14,352 [wrapper] cleanup supervisor_pilot 24345 5578
[2026-01-27 08:16:14] 2026-01-27 07:16:14,353 [wrapper] Test setup, not cleaning
[2026-01-27 08:16:14] 2026-01-27 07:16:14,354 [wrapper] apfmon messages muted
[2026-01-27 08:16:14] 2026-01-27 07:16:14,355 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:16:14] 2026-01-27 07:16:14,356 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:16:14]  *** Error codes and diagnostics ***
[2026-01-27 08:16:14]     "exeErrorCode": 0,
[2026-01-27 08:16:14]     "exeErrorDiag": "",
[2026-01-27 08:16:14]     "pilotErrorCode": 0,
[2026-01-27 08:16:14]     "pilotErrorDiag": "",
[2026-01-27 08:16:14]  *** Listing of results directory ***
[2026-01-27 08:16:14] total 668608
[2026-01-27 08:16:14] -rwx------ 1 mf493845 unix-user     36322 Jan 25 23:57 runpilot2-wrapper.sh
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      5111 Jan 25 23:58 queuedata.json
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user    584422 Jan 26 00:00 pilot3.tar.gz
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user       100 Jan 27 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:16:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 27 05:22 run_atlas
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user       105 Jan 27 05:22 job.xml
[2026-01-27 08:16:14] -rw-r--r-- 2 mf493845 unix-user 496758280 Jan 27 07:28 EVNT.48318032._000043.pool.root.1
[2026-01-27 08:16:14] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 27 07:28 start_atlas.sh
[2026-01-27 08:16:14] drwxrwx--x 2 mf493845 unix-user       100 Jan 27 07:28 shared
[2026-01-27 08:16:14] -rw-r--r-- 2 mf493845 unix-user    597758 Jan 27 07:28 input.tar.gz
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      6389 Jan 27 07:28 init_data.xml
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user         0 Jan 27 07:28 boinc_setup_complete
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      8192 Jan 27 07:28 boinc_mmap_file
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user         0 Jan 27 07:28 boinc_lockfile
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      2532 Jan 27 07:28 pandaJob.out
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user   1004335 Jan 27 07:29 agis_schedconf.cvmfs.json
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user   1516246 Jan 27 07:29 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user       420 Jan 27 07:29 workernode_map.json
[2026-01-27 08:16:14] drwx------ 5 mf493845 unix-user       440 Jan 27 07:29 pilot3
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user 182465415 Jan 27 08:15 HITS.48318034._001875.pool.root.1
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      1033 Jan 27 08:15 memory_monitor_summary.json
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user    314616 Jan 27 08:15 log.48318034._001875.job.log.tgz.1
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      6326 Jan 27 08:15 heartbeat.json
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user        95 Jan 27 08:16 pilot_heartbeat.json
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      4827 Jan 27 08:16 pilotlog.txt
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user    444004 Jan 27 08:16 log.48318034._001875.job.log.1
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user       357 Jan 27 08:16 output.list
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user       620 Jan 27 08:16 runtime_log
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user    778240 Jan 27 08:16 result.tar.gz
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user      9219 Jan 27 08:16 runtime_log.err
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user       642 Jan 27 08:16 f9hLDmVEO48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmn31KDmN32ehn.diag
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user     21618 Jan 27 08:16 stderr.txt
[2026-01-27 08:16:14] HITS file was successfully produced:
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user 182465415 Jan 27 08:15 shared/HITS.pool.root.1
[2026-01-27 08:16:14]  *** Contents of shared directory: ***
[2026-01-27 08:16:14] total 664668
[2026-01-27 08:16:14] -rw-r--r-- 2 mf493845 unix-user 496758280 Jan 27 07:28 ATLAS.root_0
[2026-01-27 08:16:14] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 27 07:28 start_atlas.sh
[2026-01-27 08:16:14] -rw-r--r-- 2 mf493845 unix-user    597758 Jan 27 07:28 input.tar.gz
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user 182465415 Jan 27 08:15 HITS.pool.root.1
[2026-01-27 08:16:14] -rw------- 1 mf493845 unix-user    778240 Jan 27 08:16 result.tar.gz
08:16:15 (1553): run_atlas exited; CPU time 20203.351444
08:16:15 (1553): called boinc_finish(0)

</stderr_txt>
]]>

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