Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:19:22 (6220): wrapper (7.7.26015): starting
07:19:22 (6220): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 07:19:22] Arguments: --nthreads 8
[2026-01-27 07:19:22] Threads: 8
[2026-01-27 07:19:22] Checking for CVMFS
[2026-01-27 07:19:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 07:19:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 07:19:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 07:19:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 07:19:22] 2.11.0.0 8857 154591 90724 155575 0 1 2866402 4096001 0 130560 2 9049784 99.591 8832132 471 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-27 07:19:22] CVMFS is ok
[2026-01-27 07:19:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 07:19:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 07:19:22] Further information can be found at the LHC@home message board.
[2026-01-27 07:19:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 07:19:22] Checking for apptainer binary...
[2026-01-27 07:19:22] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-27 07:19:22] apptainer is not installed, using version from CVMFS
[2026-01-27 07:19:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 07:19:23] WARNING: Environment variable TMPDIR already has value [/tmp/job_11053626/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node248
[2026-01-27 07:19:23] apptainer works
[2026-01-27 07:19:23] Set ATHENA_PROC_NUMBER=8
[2026-01-27 07:19:23] Set ATHENA_CORE_NUMBER=8
[2026-01-27 07:19:23] Starting ATLAS job with PandaID=6983304286
[2026-01-27 07:19:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11053626/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:10:44]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:10:44]  is_altstaged=None
[2026-01-27 08:10:44]  is_tar=False
[2026-01-27 08:10:44]  lfn=log.48318042._000625.job.log.tgz.1
[2026-01-27 08:10:44]  mtime=0
[2026-01-27 08:10:44]  protocol_id=None
[2026-01-27 08:10:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 08:10:44]  replicas=None
[2026-01-27 08:10:44]  scope=mc23_13p6TeV
[2026-01-27 08:10:44]  status=None
[2026-01-27 08:10:44]  status_code=0
[2026-01-27 08:10:44]  storage_token=
[2026-01-27 08:10:44]  surl=/tmp/job_11053626/atlas/pilot/slots/0/PanDA_Pilot-6983304286/log.48318042._000625.job.log.tgz.1
[2026-01-27 08:10:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/92/log.48318042._000625.job.log.tgz.1
[2026-01-27 08:10:44]  workdir=None
[2026-01-27 08:10:44] ]
[2026-01-27 08:10:44] 2026-01-27 07:09:42,378 | INFO     | transferring file log.48318042._000625.job.log.tgz.1 from /tmp/job_11053626/atlas/pilot/slots/0/PanDA_Pilot-6983304286/log.48318042._000625.job.log.tgz.1 to /tmp/j
[2026-01-27 08:10:44] 2026-01-27 07:09:42,378 | INFO     | executing command: /usr/bin/env mv /tmp/job_11053626/atlas/pilot/slots/0/PanDA_Pilot-6983304286/log.48318042._000625.job.log.tgz.1 /tmp/job_11053626/atlas/pilot/sl
[2026-01-27 08:10:44] 2026-01-27 07:09:42,385 | INFO     | adding to output.list: log.48318042._000625.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/92/log.48318042._000625.job.log.tg
[2026-01-27 08:10:44] 2026-01-27 07:09:42,386 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 08:10:44] 2026-01-27 07:09:42,386 | INFO     | summary of transferred files:
[2026-01-27 08:10:44] 2026-01-27 07:09:42,386 | INFO     |  -- lfn=log.48318042._000625.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 08:10:44] 2026-01-27 07:09:42,386 | INFO     | stage-out finished correctly
[2026-01-27 08:10:44] 2026-01-27 07:09:43,124 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 08:10:44] 2026-01-27 07:09:43,419 | INFO     | PID=10314 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 08:10:44] 2026-01-27 07:09:43,419 | INFO     | .. there are 4 such processes running
[2026-01-27 08:10:44] 2026-01-27 07:09:43,899 | INFO     | job 6983304286 has state=finished
[2026-01-27 08:10:44] 2026-01-27 07:09:43,899 | INFO     | preparing for final server update for job 6983304286 in state='finished'
[2026-01-27 08:10:44] 2026-01-27 07:09:43,899 | INFO     | reading metadata from: /tmp/job_11053626/atlas/pilot/slots/0/PanDA_Pilot-6983304286/jobReport.json
[2026-01-27 08:10:44] 2026-01-27 07:09:43,900 | INFO     | added worker_node to metadata from /tmp/job_11053626/atlas/pilot/slots/0/workernode_map.json
[2026-01-27 08:10:44] 2026-01-27 07:09:43,900 | INFO     | this job has now completed (state=finished)
[2026-01-27 08:10:44] 2026-01-27 07:09:43,900 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 08:10:44] 2026-01-27 07:09:43,900 | INFO     | log transfer has been attempted: DONE
[2026-01-27 08:10:44] 2026-01-27 07:09:43,900 | INFO     | job 6983304286 has finished - writing final server update
[2026-01-27 08:10:44] 2026-01-27 07:09:43,900 | INFO     | total number of processed events: 400 (read)
[2026-01-27 08:10:44] 2026-01-27 07:09:43,918 | INFO     | using path: /tmp/job_11053626/atlas/pilot/slots/0/PanDA_Pilot-6983304286/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 08:10:44] 2026-01-27 07:09:43,918 | INFO     | extracted standard info from prmon json
[2026-01-27 08:10:44] 2026-01-27 07:09:43,918 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 08:10:44] 2026-01-27 07:09:43,918 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 08:10:44] 2026-01-27 07:09:43,918 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 08:10:44] 2026-01-27 07:09:43,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 08:10:44] 2026-01-27 07:09:43,919 | INFO     | fitting pss+swap vs Time
[2026-01-27 08:10:44] 2026-01-27 07:09:43,919 | INFO     | sum of square deviations: 22960430.5
[2026-01-27 08:10:44] 2026-01-27 07:09:43,919 | INFO     | sum of deviations: -4381133429.500001
[2026-01-27 08:10:44] 2026-01-27 07:09:43,919 | INFO     | mean x: 1769496345.5
[2026-01-27 08:10:44] 2026-01-27 07:09:43,919 | INFO     | mean y: 2736449.976190476
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | intersect: 337644471549.33044
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | chi2: 0.034710623164104316
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | current memory leak: -190.81 B/s (using 42 data points, chi2=0.03)
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | could have reported an average CPU frequency of 2364 MHz (5 samples)
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | ..............................
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . Timing measurements:
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . get job = 0 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . initial setup = 3 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . payload setup = 2 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . stage-in = 0 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . payload execution = 2989 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . stage-out = 0 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | . log creation = 0 s
[2026-01-27 08:10:44] 2026-01-27 07:09:43,920 | INFO     | ..............................
[2026-01-27 08:10:44] 2026-01-27 07:09:44,419 | INFO     | time since job start (3010s) is within the limit (349056.0s)
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | 
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | job summary report
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | --------------------------------------------------
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | PanDA job id: 6983304286
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | task id: 48318042
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | errors: (none)
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | pilot state: finished 
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | transexitcode: 0
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | exeerrorcode: 0
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | exeerrordiag: 
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | exitcode: 0
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | exitmsg: OK
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | cpuconsumptiontime: 21726 s
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | nevents: 400
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | neventsw: 0
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | pid: 14831
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | pgrp: 14831
[2026-01-27 08:10:44] 2026-01-27 07:09:44,454 | INFO     | corecount: 8
[2026-01-27 08:10:44] 2026-01-27 07:09:44,455 | INFO     | event service: False
[2026-01-27 08:10:44] 2026-01-27 07:09:44,455 | INFO     | sizes: {0: 2284371, 11: 2284371, 2995: 2309836, 2996: 2309835, 2997: 2318975, 2998: 2319145}
[2026-01-27 08:10:44] 2026-01-27 07:09:44,455 | INFO     | --------------------------------------------------
[2026-01-27 08:10:44] 2026-01-27 07:09:44,455 | INFO     | 
[2026-01-27 08:10:44] 2026-01-27 07:09:44,455 | INFO     | executing command: ls -lF /tmp/job_11053626/atlas/pilot/slots/0
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,464 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 08:10:44] 2026-01-27 07:09:44,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,465 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 08:10:44] 2026-01-27 07:09:44,465 | INFO     | job 6983304286 has completed (purged errors)
[2026-01-27 08:10:44] 2026-01-27 07:09:44,465 | INFO     | overall cleanup function is called
[2026-01-27 08:10:44] 2026-01-27 07:09:44,640 | WARNING  | process 14831 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 08:10:44] 2026-01-27 07:09:44,719 | INFO     | using path: /tmp/job_11053626/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 08:10:44] 2026-01-27 07:09:44,813 | INFO     | number of running child processes to parent process 14831: 1
[2026-01-27 08:10:44] 2026-01-27 07:09:44,813 | INFO     | maximum number of monitored processes: 6
[2026-01-27 08:10:44] 2026-01-27 07:09:44,813 | INFO     | aborting job monitoring since job object (job id=6983304286) has expired
[2026-01-27 08:10:44] 2026-01-27 07:09:45,471 | INFO     | --- collectZombieJob: --- 10, [14831]
[2026-01-27 08:10:44] 2026-01-27 07:09:45,471 | INFO     | zombie collector waiting for pid 14831
[2026-01-27 08:10:44] 2026-01-27 07:09:45,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:10:44] 2026-01-27 07:09:45,471 | INFO     | collected zombie processes
[2026-01-27 08:10:44] 2026-01-27 07:09:45,471 | INFO     | will attempt to kill all subprocesses of pid=14831
[2026-01-27 08:10:44] 2026-01-27 07:09:45,567 | INFO     | process IDs to be killed: [14831] (in reverse order)
[2026-01-27 08:10:44] 2026-01-27 07:09:45,601 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:10:44] 2026-01-27 07:09:45,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:10:44] 2026-01-27 07:09:45,605 | INFO     | did not find any defunct processes belonging to 14831
[2026-01-27 08:10:44] 2026-01-27 07:09:45,608 | INFO     | did not find any defunct processes belonging to 14831
[2026-01-27 08:10:44] 2026-01-27 07:09:45,608 | INFO     | ready for new job
[2026-01-27 08:10:44] 2026-01-27 07:09:45,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:10:44] 2026-01-27 07:09:45,609 | INFO     | **************************************
[2026-01-27 08:10:44] 2026-01-27 07:09:45,609 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:10:44] 2026-01-27 07:09:45,609 | INFO     | **************************************
[2026-01-27 08:10:44] 2026-01-27 07:09:45,609 | INFO     | 
[2026-01-27 08:10:44] 2026-01-27 07:09:45,623 | INFO     | architecture information:
[2026-01-27 08:10:44] 2026-01-27 07:09:45,623 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:10:44] 2026-01-27 07:09:45,629 | INFO     | cat /etc/os-release:
[2026-01-27 08:10:44] NAME="CentOS Linux"
[2026-01-27 08:10:44] VERSION="7 (Core)"
[2026-01-27 08:10:44] ID="centos"
[2026-01-27 08:10:44] ID_LIKE="rhel fedora"
[2026-01-27 08:10:44] VERSION_ID="7"
[2026-01-27 08:10:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:10:44] ANSI_COLOR="0;31"
[2026-01-27 08:10:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:10:44] HOME_URL="https://www.centos.org/"
[2026-01-27 08:10:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:10:44] 
[2026-01-27 08:10:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:10:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:10:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:10:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:10:44] 
[2026-01-27 08:10:44] 2026-01-27 07:09:45,629 | INFO     | **************************************
[2026-01-27 08:10:44] 2026-01-27 07:09:46,132 | INFO     | executing command: df -mP /tmp/job_11053626/atlas/pilot/slots/0
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | INFO     | sufficient remaining disk space (223181012992 B)
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | INFO     | update_server=False
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:10:44] 2026-01-27 07:09:46,138 | INFO     | aborting loop
[2026-01-27 08:10:44] 2026-01-27 07:09:46,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:10:44] 2026-01-27 07:09:46,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:10:44] 2026-01-27 07:09:46,254 | INFO     | all data control threads have been joined
[2026-01-27 08:10:44] 2026-01-27 07:09:46,444 | INFO     | all payload control threads have been joined
[2026-01-27 08:10:44] 2026-01-27 07:09:47,143 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,144 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,186 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,253 | INFO     | all job control threads have been joined
[2026-01-27 08:10:44] 2026-01-27 07:09:47,259 | INFO     | [data] control thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,311 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,363 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,449 | INFO     | [payload] control thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,575 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:47,917 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:48,144 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:48,258 | INFO     | [job] control thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:48,296 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:48,460 | INFO     | [job] validate thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:48,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:10:44] 2026-01-27 07:09:49,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:10:44] 2026-01-27 07:09:49,983 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:53,180 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:09:56,848 | INFO     | job.realtimelogging is not enabled
[2026-01-27 08:10:44] 2026-01-27 07:09:57,853 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:10:44] 2026-01-27 07:10:38,953 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:10:44] 2026-01-27 07:10:39,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065283840)>']
[2026-01-27 08:10:44] 2026-01-27 07:10:39,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:10:44] 2026-01-27 07:10:39,403 | INFO     | [monitor] control thread has ended
[2026-01-27 08:10:44] 2026-01-27 07:10:44,317 | INFO     | all workflow threads have been joined
[2026-01-27 08:10:44] 2026-01-27 07:10:44,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:10:44] 2026-01-27 07:10:44,318 | INFO     | traces error code: 0
[2026-01-27 08:10:44] 2026-01-27 07:10:44,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:10:44] 2026-01-27 07:10:44,370 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:10:44] 2026-01-27 07:10:44,371 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:10:44] 2026-01-27 07:10:44,372 [wrapper] pilotpid: 10314
[2026-01-27 08:10:44] 2026-01-27 07:10:44,374 [wrapper] Pilot exit status: 0
[2026-01-27 08:10:44] 2026-01-27 07:10:44,378 [wrapper] pandaids: 6983304286
[2026-01-27 08:10:44] 2026-01-27 07:10:44,400 [wrapper] cleanup supervisor_pilot  2895 10315
[2026-01-27 08:10:44] 2026-01-27 07:10:44,402 [wrapper] Test setup, not cleaning
[2026-01-27 08:10:44] 2026-01-27 07:10:44,403 [wrapper] apfmon messages muted
[2026-01-27 08:10:44] 2026-01-27 07:10:44,404 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:10:44] 2026-01-27 07:10:44,405 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:10:44]  *** Error codes and diagnostics ***
[2026-01-27 08:10:44]     "exeErrorCode": 0,
[2026-01-27 08:10:44]     "exeErrorDiag": "",
[2026-01-27 08:10:44]     "pilotErrorCode": 0,
[2026-01-27 08:10:44]     "pilotErrorDiag": "",
[2026-01-27 08:10:44]  *** Listing of results directory ***
[2026-01-27 08:10:44] total 682964
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user    584422 Jan 25 17:28 pilot3.tar.gz
[2026-01-27 08:10:44] -rwx------ 1 mf493845 unix-user     36322 Jan 25 17:29 runpilot2-wrapper.sh
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      5111 Jan 25 17:30 queuedata.json
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user       100 Jan 27 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:10:44] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 27 05:10 run_atlas
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user       105 Jan 27 05:10 job.xml
[2026-01-27 08:10:44] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 27 07:19 start_atlas.sh
[2026-01-27 08:10:44] drwxrwx--x 2 mf493845 unix-user       100 Jan 27 07:19 shared
[2026-01-27 08:10:44] -rw-r--r-- 2 mf493845 unix-user    597762 Jan 27 07:19 input.tar.gz
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      6391 Jan 27 07:19 init_data.xml
[2026-01-27 08:10:44] -rw-r--r-- 2 mf493845 unix-user 505417448 Jan 27 07:19 EVNT.48318040._000013.pool.root.1
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user         0 Jan 27 07:19 boinc_setup_complete
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      8192 Jan 27 07:19 boinc_mmap_file
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user         0 Jan 27 07:19 boinc_lockfile
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      2530 Jan 27 07:19 pandaJob.out
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user   1004335 Jan 27 07:19 agis_schedconf.cvmfs.json
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user   1516246 Jan 27 07:19 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user       415 Jan 27 07:19 workernode_map.json
[2026-01-27 08:10:44] drwx------ 5 mf493845 unix-user       440 Jan 27 07:19 pilot3
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user        95 Jan 27 08:09 pilot_heartbeat.json
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user 188468614 Jan 27 08:09 HITS.48318042._000625.pool.root.1
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      1013 Jan 27 08:09 memory_monitor_summary.json
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user    306989 Jan 27 08:09 log.48318042._000625.job.log.tgz.1
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      6308 Jan 27 08:09 heartbeat.json
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      4634 Jan 27 08:10 pilotlog.txt
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user    472938 Jan 27 08:10 log.48318042._000625.job.log.1
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user       357 Jan 27 08:10 output.list
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user       620 Jan 27 08:10 runtime_log
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user    798720 Jan 27 08:10 result.tar.gz
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user      9219 Jan 27 08:10 runtime_log.err
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user       644 Jan 27 08:10 9rXMDmfAI48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGJ1KDmbJXVBo.diag
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user     22001 Jan 27 08:10 stderr.txt
[2026-01-27 08:10:44] HITS file was successfully produced:
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user 188468614 Jan 27 08:09 shared/HITS.pool.root.1
[2026-01-27 08:10:44]  *** Contents of shared directory: ***
[2026-01-27 08:10:44] total 679004
[2026-01-27 08:10:44] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 27 07:19 start_atlas.sh
[2026-01-27 08:10:44] -rw-r--r-- 2 mf493845 unix-user    597762 Jan 27 07:19 input.tar.gz
[2026-01-27 08:10:44] -rw-r--r-- 2 mf493845 unix-user 505417448 Jan 27 07:19 ATLAS.root_0
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user 188468614 Jan 27 08:09 HITS.pool.root.1
[2026-01-27 08:10:44] -rw------- 1 mf493845 unix-user    798720 Jan 27 08:10 result.tar.gz
08:10:46 (6220): run_atlas exited; CPU time 21766.783465
08:10:46 (6220): called boinc_finish(0)

</stderr_txt>
]]>

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