Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:32:05 (3292088): wrapper (7.7.26015): starting
12:32:05 (3292088): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 12:32:05] Arguments: --nthreads 4
[2026-01-27 12:32:05] Threads: 4
[2026-01-27 12:32:05] Checking for CVMFS
[2026-01-27 12:32:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:32:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:32:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:32:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:32:05] 2.13.3.0 567547 9547 51560 155583 2 188 5458448 6144001 2751 130560 0 23711745 99.995 430140 734 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.19:3128 1
[2026-01-27 12:32:05] CVMFS is ok
[2026-01-27 12:32:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:32:05] Checking for apptainer binary...
[2026-01-27 12:32:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:32:05] Running /usr/bin/apptainer --version
[2026-01-27 12:32:05] apptainer version 1.4.5
[2026-01-27 12:32:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:32:05] casi34-lmde7
[2026-01-27 12:32:05] apptainer works
[2026-01-27 12:32:05] Set ATHENA_PROC_NUMBER=4
[2026-01-27 12:32:05] Set ATHENA_CORE_NUMBER=4
[2026-01-27 12:32:06] Starting ATLAS job with PandaID=6983449305
[2026-01-27 12:32:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:45:23]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:45:23]  replicas=None
[2026-01-27 13:45:23]  scope=mc23_13p6TeV
[2026-01-27 13:45:23]  status=None
[2026-01-27 13:45:23]  status_code=0
[2026-01-27 13:45:23]  storage_token=
[2026-01-27 13:45:23]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6983449305/log.48298567._000375.job.log.tgz.1
[2026-01-27 13:45:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/ec/log.48298567._000375.job.log.tgz.1
[2026-01-27 13:45:23]  workdir=None
[2026-01-27 13:45:23] ]
[2026-01-27 13:45:23] 2026-01-27 12:44:28,431 | INFO     | transferring file log.48298567._000375.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6983449305/log.48298567._000375.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-27 13:45:23] 2026-01-27 12:44:28,431 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6983449305/log.48298567._000375.job.log.tgz.1 /var/lib/boinc/slots/3/log.48298567._000375.job
[2026-01-27 13:45:23] 2026-01-27 12:44:28,437 | INFO     | adding to output.list: log.48298567._000375.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/ec/log.48298567._000375.job.log.tg
[2026-01-27 13:45:23] 2026-01-27 12:44:28,437 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 13:45:23] 2026-01-27 12:44:28,437 | INFO     | summary of transferred files:
[2026-01-27 13:45:23] 2026-01-27 12:44:28,437 | INFO     |  -- lfn=log.48298567._000375.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 13:45:23] 2026-01-27 12:44:28,437 | INFO     | stage-out finished correctly
[2026-01-27 13:45:23] 2026-01-27 12:44:28,625 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 13:45:23] 2026-01-27 12:44:29,842 | INFO     | job 6983449305 has state=finished
[2026-01-27 13:45:23] 2026-01-27 12:44:29,842 | INFO     | preparing for final server update for job 6983449305 in state='finished'
[2026-01-27 13:45:23] 2026-01-27 12:44:29,843 | INFO     | reading metadata from: /var/lib/boinc/slots/3/PanDA_Pilot-6983449305/jobReport.json
[2026-01-27 13:45:23] 2026-01-27 12:44:29,843 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/3/workernode_map.json
[2026-01-27 13:45:23] 2026-01-27 12:44:29,844 | INFO     | this job has now completed (state=finished)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,844 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,844 | INFO     | log transfer has been attempted: DONE
[2026-01-27 13:45:23] 2026-01-27 12:44:29,844 | INFO     | job 6983449305 has finished - writing final server update
[2026-01-27 13:45:23] 2026-01-27 12:44:29,844 | INFO     | total number of processed events: 400 (read)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,845 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6983449305/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,845 | INFO     | extracted standard info from prmon json
[2026-01-27 13:45:23] 2026-01-27 12:44:29,845 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 13:45:23] 2026-01-27 12:44:29,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 13:45:23] 2026-01-27 12:44:29,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 13:45:23] 2026-01-27 12:44:29,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | fitting pss+swap vs Time
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | sum of square deviations: 81266640.0
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | sum of deviations: -2270633164.5
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | mean x: 1769515770.5
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | mean y: 2518013.671875
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | intersect: 49443730220.83425
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | chi2: 0.011722870077551182
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | current memory leak: -27.94 B/s (using 64 data points, chi2=0.01)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | could have reported an average CPU frequency of 5181 MHz (6 samples)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | ..............................
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . Timing measurements:
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . get job = 0 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . initial setup = 1 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . payload setup = 1 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . stage-in = 0 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . payload execution = 4320 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . stage-out = 0 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | . log creation = 0 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,846 | INFO     | ..............................
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | 
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | job summary report
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | --------------------------------------------------
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | PanDA job id: 6983449305
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | task id: 48298567
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | errors: (none)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | pilot state: finished 
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | transexitcode: 0
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | exeerrorcode: 0
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | exeerrordiag: 
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | exitcode: 0
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | exitmsg: OK
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | cpuconsumptiontime: 16640 s
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | nevents: 400
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | neventsw: 0
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | pid: 3300518
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | pgrp: 3300518
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | corecount: 4
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | event service: False
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | sizes: {0: 2283275, 1: 2284393, 11: 2284393, 4325: 2310606, 4327: 2319660, 4328: 2319798}
[2026-01-27 13:45:23] 2026-01-27 12:44:29,878 | INFO     | --------------------------------------------------
[2026-01-27 13:45:23] 2026-01-27 12:44:29,879 | INFO     | 
[2026-01-27 13:45:23] 2026-01-27 12:44:29,879 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-01-27 13:45:23] 2026-01-27 12:44:29,885 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,885 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,885 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | job 6983449305 has completed (purged errors)
[2026-01-27 13:45:23] 2026-01-27 12:44:29,886 | INFO     | overall cleanup function is called
[2026-01-27 13:45:23] 2026-01-27 12:44:30,831 | WARNING  | process 3300518 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 13:45:23] 2026-01-27 12:44:30,851 | INFO     | using path: /var/lib/boinc/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:45:23] 2026-01-27 12:44:30,852 | INFO     | using path: /var/lib/boinc/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:45:23] 2026-01-27 12:44:30,852 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 13:45:23] 2026-01-27 12:44:30,852 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 13:45:23] 2026-01-27 12:44:30,852 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/3/PanDA_Pilot-6983449305/payload.stdout) since it has not been created yet
[2026-01-27 13:45:23] 2026-01-27 12:44:30,852 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-27 13:45:23] 2026-01-27 12:44:30,857 | INFO     | sufficient remaining disk space (374902620160 B)
[2026-01-27 13:45:23] 2026-01-27 12:44:30,857 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 13:45:23] 2026-01-27 12:44:30,857 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/3/PanDA_Pilot-6983449305/HITS.48298567._000375.pool.root.1 since it does not exist
[2026-01-27 13:45:23] 2026-01-27 12:44:30,884 | INFO     | number of running child processes to parent process 3300518: 1
[2026-01-27 13:45:23] 2026-01-27 12:44:30,885 | INFO     | maximum number of monitored processes: 6
[2026-01-27 13:45:23] 2026-01-27 12:44:30,885 | INFO     | aborting job monitoring since job object (job id=6983449305) has expired
[2026-01-27 13:45:23] 2026-01-27 12:44:30,890 | INFO     | --- collectZombieJob: --- 10, [3300518]
[2026-01-27 13:45:23] 2026-01-27 12:44:30,890 | INFO     | zombie collector waiting for pid 3300518
[2026-01-27 13:45:23] 2026-01-27 12:44:30,890 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:45:23] 2026-01-27 12:44:30,890 | INFO     | collected zombie processes
[2026-01-27 13:45:23] 2026-01-27 12:44:30,890 | INFO     | will attempt to kill all subprocesses of pid=3300518
[2026-01-27 13:45:23] 2026-01-27 12:44:30,917 | INFO     | process IDs to be killed: [3300518] (in reverse order)
[2026-01-27 13:45:23] 2026-01-27 12:44:30,950 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:45:23] 2026-01-27 12:44:30,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:45:23] 2026-01-27 12:44:30,952 | INFO     | did not find any defunct processes belonging to 3300518
[2026-01-27 13:45:23] 2026-01-27 12:44:30,953 | INFO     | did not find any defunct processes belonging to 3300518
[2026-01-27 13:45:23] 2026-01-27 12:44:30,953 | INFO     | ready for new job
[2026-01-27 13:45:23] 2026-01-27 12:44:30,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:45:23] 2026-01-27 12:44:30,954 | INFO     | **************************************
[2026-01-27 13:45:23] 2026-01-27 12:44:30,954 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:45:23] 2026-01-27 12:44:30,954 | INFO     | **************************************
[2026-01-27 13:45:23] 2026-01-27 12:44:30,954 | INFO     | 
[2026-01-27 13:45:23] 2026-01-27 12:44:30,954 | INFO     | architecture information:
[2026-01-27 13:45:23] 2026-01-27 12:44:30,954 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:45:23] 2026-01-27 12:44:30,958 | INFO     | cat /etc/os-release:
[2026-01-27 13:45:23] NAME="CentOS Linux"
[2026-01-27 13:45:23] VERSION="7 (Core)"
[2026-01-27 13:45:23] ID="centos"
[2026-01-27 13:45:23] ID_LIKE="rhel fedora"
[2026-01-27 13:45:23] VERSION_ID="7"
[2026-01-27 13:45:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:45:23] ANSI_COLOR="0;31"
[2026-01-27 13:45:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:45:23] HOME_URL="https://www.centos.org/"
[2026-01-27 13:45:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:45:23] 
[2026-01-27 13:45:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:45:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:45:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:45:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:45:23] 
[2026-01-27 13:45:23] 2026-01-27 12:44:30,959 | INFO     | **************************************
[2026-01-27 13:45:23] 2026-01-27 12:44:31,461 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | INFO     | sufficient remaining disk space (374903668736 B)
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | INFO     | update_server=False
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:45:23] 2026-01-27 12:44:31,466 | INFO     | will abort loop
[2026-01-27 13:45:23] 2026-01-27 12:44:31,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:45:23] 2026-01-27 12:44:32,182 | INFO     | all data control threads have been joined
[2026-01-27 13:45:23] 2026-01-27 12:44:32,196 | INFO     | all job control threads have been joined
[2026-01-27 13:45:23] 2026-01-27 12:44:32,470 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:32,470 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:32,471 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:32,638 | INFO     | all payload control threads have been joined
[2026-01-27 13:45:23] 2026-01-27 12:44:32,734 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,066 | INFO     | [job] validate thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,186 | INFO     | [data] control thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,198 | INFO     | [job] control thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,235 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,250 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,478 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,480 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,642 | INFO     | [payload] control thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,660 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:33,754 | INFO     | job.realtimelogging is not enabled
[2026-01-27 13:45:23] 2026-01-27 12:44:33,910 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:34,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:45:23] 2026-01-27 12:44:34,758 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:44:38,665 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:45:23] 2026-01-27 12:45:01,028 | INFO     | PID=3295976 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 13:45:23] 2026-01-27 12:45:01,028 | INFO     | .. there are 4 such processes running
[2026-01-27 13:45:23] 2026-01-27 12:45:01,028 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:45:23] 2026-01-27 12:45:01,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:45:23] 2026-01-27 12:45:01,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:45:23] 2026-01-27 12:45:17,642 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:45:23] 2026-01-27 12:45:18,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140000855672640)>', '<ExcThread(monitor, started 140000230373120)>']
[2026-01-27 13:45:23] 2026-01-27 12:45:19,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:45:23] 2026-01-27 12:45:19,103 | INFO     | [monitor] control thread has ended
[2026-01-27 13:45:23] 2026-01-27 12:45:23,605 | INFO     | all workflow threads have been joined
[2026-01-27 13:45:23] 2026-01-27 12:45:23,605 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:45:23] 2026-01-27 12:45:23,605 | INFO     | traces error code: 0
[2026-01-27 13:45:23] 2026-01-27 12:45:23,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:45:23] 2026-01-27 12:45:23,649 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:45:23] 2026-01-27 12:45:23,650 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:45:23] 2026-01-27 12:45:23,651 [wrapper] pilotpid: 3295976
[2026-01-27 13:45:23] 2026-01-27 12:45:23,652 [wrapper] Pilot exit status: 0
[2026-01-27 13:45:23] 2026-01-27 12:45:23,654 [wrapper] pandaids: 6983449305
[2026-01-27 13:45:23] 2026-01-27 12:45:23,663 [wrapper] cleanup supervisor_pilot 3344891 3295977
[2026-01-27 13:45:23] 2026-01-27 12:45:23,664 [wrapper] Test setup, not cleaning
[2026-01-27 13:45:23] 2026-01-27 12:45:23,665 [wrapper] apfmon messages muted
[2026-01-27 13:45:23] 2026-01-27 12:45:23,665 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:45:23] 2026-01-27 12:45:23,666 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:45:23]  *** Error codes and diagnostics ***
[2026-01-27 13:45:23]     "exeErrorCode": 0,
[2026-01-27 13:45:23]     "exeErrorDiag": "",
[2026-01-27 13:45:23]     "pilotErrorCode": 0,
[2026-01-27 13:45:23]     "pilotErrorDiag": "",
[2026-01-27 13:45:23]  *** Listing of results directory ***
[2026-01-27 13:45:23] total 415396
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc    584422 25 janv. 21:48 pilot3.tar.gz
[2026-01-27 13:45:23] -rwx------ 1 boinc boinc     36322 25 janv. 21:51 runpilot2-wrapper.sh
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc      5111 25 janv. 21:54 queuedata.json
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc       100 27 janv. 12:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:45:23] -rwxr-xr-x 1 boinc boinc      7986 27 janv. 12:32 run_atlas
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc       105 27 janv. 12:32 job.xml
[2026-01-27 13:45:23] -rw-r--r-- 2 boinc boinc 250882187 27 janv. 12:32 EVNT.48298565._000015.pool.root.1
[2026-01-27 13:45:23] -rw-r--r-- 2 boinc boinc     15845 27 janv. 12:32 start_atlas.sh
[2026-01-27 13:45:23] drwxrwx--x 2 boinc boinc      4096 27 janv. 12:32 shared
[2026-01-27 13:45:23] -rw-r--r-- 2 boinc boinc    597772 27 janv. 12:32 input.tar.gz
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc      9963 27 janv. 12:32 init_data.xml
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc         0 27 janv. 12:32 boinc_setup_complete
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc         0 27 janv. 12:32 boinc_lockfile
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc      2614 27 janv. 12:32 pandaJob.out
[2026-01-27 13:45:23] -rw------- 1 boinc boinc        49 27 janv. 12:32 setup.sh.local
[2026-01-27 13:45:23] -rw------- 1 boinc boinc   1002853 27 janv. 12:32 agis_schedconf.cvmfs.json
[2026-01-27 13:45:23] -rw------- 1 boinc boinc   1516246 27 janv. 12:32 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:45:23] -rw------- 1 boinc boinc       421 27 janv. 12:32 workernode_map.json
[2026-01-27 13:45:23] drwx------ 5 boinc boinc      4096 27 janv. 12:32 pilot3
[2026-01-27 13:45:23] -rw------- 1 boinc boinc 168667184 27 janv. 13:44 HITS.48298567._000375.pool.root.1
[2026-01-27 13:45:23] -rw------- 1 boinc boinc      1017 27 janv. 13:44 memory_monitor_summary.json
[2026-01-27 13:45:23] -rw------- 1 boinc boinc    276272 27 janv. 13:44 log.48298567._000375.job.log.tgz.1
[2026-01-27 13:45:23] -rw------- 1 boinc boinc      6271 27 janv. 13:44 heartbeat.json
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc       529 27 janv. 13:44 boinc_task_state.xml
[2026-01-27 13:45:23] -rw------- 1 boinc boinc        95 27 janv. 13:45 pilot_heartbeat.json
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc      8192 27 janv. 13:45 boinc_mmap_file
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc        27 27 janv. 13:45 wrapper_checkpoint.txt
[2026-01-27 13:45:23] -rw------- 1 boinc boinc      4894 27 janv. 13:45 pilotlog.txt
[2026-01-27 13:45:23] -rw------- 1 boinc boinc    658231 27 janv. 13:45 log.48298567._000375.job.log.1
[2026-01-27 13:45:23] -rw------- 1 boinc boinc       357 27 janv. 13:45 output.list
[2026-01-27 13:45:23] -rw------- 1 boinc boinc       644 27 janv. 13:45 w0HKDmHGM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSo1KDmzrd56n.diag
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc      9274 27 janv. 13:45 runtime_log.err
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc       620 27 janv. 13:45 runtime_log
[2026-01-27 13:45:23] -rw------- 1 boinc boinc    952320 27 janv. 13:45 result.tar.gz
[2026-01-27 13:45:23] -rw-r--r-- 1 boinc boinc     21672 27 janv. 13:45 stderr.txt
[2026-01-27 13:45:23] HITS file was successfully produced:
[2026-01-27 13:45:23] -rw------- 1 boinc boinc 168667184 27 janv. 13:44 shared/HITS.pool.root.1
[2026-01-27 13:45:23]  *** Contents of shared directory: ***
[2026-01-27 13:45:23] total 411260
[2026-01-27 13:45:23] -rw-r--r-- 2 boinc boinc 250882187 27 janv. 12:32 ATLAS.root_0
[2026-01-27 13:45:23] -rw-r--r-- 2 boinc boinc     15845 27 janv. 12:32 start_atlas.sh
[2026-01-27 13:45:23] -rw-r--r-- 2 boinc boinc    597772 27 janv. 12:32 input.tar.gz
[2026-01-27 13:45:23] -rw------- 1 boinc boinc 168667184 27 janv. 13:44 HITS.pool.root.1
[2026-01-27 13:45:23] -rw------- 1 boinc boinc    952320 27 janv. 13:45 result.tar.gz
13:45:25 (3292088): run_atlas exited; CPU time 16655.735560
13:45:25 (3292088): called boinc_finish(0)

</stderr_txt>
]]>

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