Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:34:15 (1010471): wrapper (7.7.26015): starting
20:34:15 (1010471): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 20:34:15] Arguments: --nthreads 4
[2026-01-27 20:34:15] Threads: 4
[2026-01-27 20:34:15] Checking for CVMFS
[2026-01-27 20:34:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 20:34:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 20:34:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 20:34:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 20:34:16] 2.9.2.0 4135 4359 97124 155597 3 50 29500323 36864000 0 130560 0 2115456 99.985 168027 4755 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 20:34:16] CVMFS is ok
[2026-01-27 20:34:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 20:34:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 20:34:16] Further information can be found at the LHC@home message board.
[2026-01-27 20:34:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 20:34:16] Checking for apptainer binary...
[2026-01-27 20:34:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 20:34:16] Running /usr/bin/apptainer --version
[2026-01-27 20:34:16] apptainer version 1.4.1-1.1
[2026-01-27 20:34:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 20:34:16] atlasA237
[2026-01-27 20:34:16] apptainer works
[2026-01-27 20:34:16] Set ATHENA_PROC_NUMBER=4
[2026-01-27 20:34:16] Set ATHENA_CORE_NUMBER=4
[2026-01-27 20:34:16] Starting ATLAS job with PandaID=6984043708
[2026-01-27 20:34:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 21:46:52]  *** The last 200 lines of the pilot log: ***
[2026-01-27 21:46:52] 2026-01-27 20:46:20,889 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | job 6984043708 has completed (purged errors)
[2026-01-27 21:46:52] 2026-01-27 20:46:20,890 | INFO     | overall cleanup function is called
[2026-01-27 21:46:52] 2026-01-27 20:46:21,897 | INFO     | --- collectZombieJob: --- 10, [1019173]
[2026-01-27 21:46:52] 2026-01-27 20:46:21,897 | INFO     | zombie collector waiting for pid 1019173
[2026-01-27 21:46:52] 2026-01-27 20:46:21,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 21:46:52] 2026-01-27 20:46:21,897 | INFO     | collected zombie processes
[2026-01-27 21:46:52] 2026-01-27 20:46:21,897 | INFO     | will attempt to kill all subprocesses of pid=1019173
[2026-01-27 21:46:52] 2026-01-27 20:46:21,962 | INFO     | process IDs to be killed: [1019173] (in reverse order)
[2026-01-27 21:46:52] 2026-01-27 20:46:22,003 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 21:46:52] 2026-01-27 20:46:22,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 21:46:52] 2026-01-27 20:46:22,005 | INFO     | did not find any defunct processes belonging to 1019173
[2026-01-27 21:46:52] 2026-01-27 20:46:22,008 | INFO     | did not find any defunct processes belonging to 1019173
[2026-01-27 21:46:52] 2026-01-27 20:46:22,008 | INFO     | ready for new job
[2026-01-27 21:46:52] 2026-01-27 20:46:22,008 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 21:46:52] 2026-01-27 20:46:22,009 | INFO     | **************************************
[2026-01-27 21:46:52] 2026-01-27 20:46:22,009 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 21:46:52] 2026-01-27 20:46:22,009 | INFO     | **************************************
[2026-01-27 21:46:52] 2026-01-27 20:46:22,009 | INFO     | 
[2026-01-27 21:46:52] 2026-01-27 20:46:22,009 | INFO     | architecture information:
[2026-01-27 21:46:52] 2026-01-27 20:46:22,009 | INFO     | executing command: cat /etc/os-release
[2026-01-27 21:46:52] 2026-01-27 20:46:22,023 | INFO     | cat /etc/os-release:
[2026-01-27 21:46:52] NAME="CentOS Linux"
[2026-01-27 21:46:52] VERSION="7 (Core)"
[2026-01-27 21:46:52] ID="centos"
[2026-01-27 21:46:52] ID_LIKE="rhel fedora"
[2026-01-27 21:46:52] VERSION_ID="7"
[2026-01-27 21:46:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 21:46:52] ANSI_COLOR="0;31"
[2026-01-27 21:46:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 21:46:52] HOME_URL="https://www.centos.org/"
[2026-01-27 21:46:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 21:46:52] 
[2026-01-27 21:46:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 21:46:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 21:46:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 21:46:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 21:46:52] 
[2026-01-27 21:46:52] 2026-01-27 20:46:22,024 | INFO     | **************************************
[2026-01-27 21:46:52] 2026-01-27 20:46:22,527 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | INFO     | sufficient remaining disk space (330002595840 B)
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | INFO     | update_server=False
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:46:52] 2026-01-27 20:46:22,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 21:46:52] 2026-01-27 20:46:22,748 | INFO     | all data control threads have been joined
[2026-01-27 21:46:52] 2026-01-27 20:46:22,839 | INFO     | all payload control threads have been joined
[2026-01-27 21:46:52] 2026-01-27 20:46:22,964 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 21:46:52] 2026-01-27 20:46:22,964 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 21:46:52] 2026-01-27 20:46:22,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:46:52] 2026-01-27 20:46:22,964 | INFO     | will abort loop
[2026-01-27 21:46:52] 2026-01-27 20:46:23,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 21:46:52] 2026-01-27 20:46:23,549 | INFO     | [job] queue monitor thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:23,549 | INFO     | [job] retrieve thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:23,659 | INFO     | [payload] failed_post thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:23,754 | INFO     | [data] control thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:23,845 | INFO     | [payload] control thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:23,970 | INFO     | [job] job monitor thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:24,087 | INFO     | all job control threads have been joined
[2026-01-27 21:46:52] 2026-01-27 20:46:24,188 | INFO     | [job] validate thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:24,192 | INFO     | [payload] validate_post thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:24,419 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:24,506 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:24,658 | INFO     | [data] copytool_in thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:24,744 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:25,092 | INFO     | [job] control thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:25,352 | INFO     | [data] copytool_out thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:26,550 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:33,068 | INFO     | job.realtimelogging is not enabled
[2026-01-27 21:46:52] 2026-01-27 20:46:34,073 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 21:46:52] 2026-01-27 20:46:34,794 | INFO     | [monitor] cgroup control has ended
[2026-01-27 21:46:52] 2026-01-27 20:46:35,888 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139871399561024)>', '<ExcThread(monitor, started 139870609585920)>']
[2026-01-27 21:46:52] 2026-01-27 20:46:40,895 | INFO     | all workflow threads have been joined
[2026-01-27 21:46:52] 2026-01-27 20:46:40,896 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 21:46:52] 2026-01-27 20:46:40,896 | INFO     | traces error code: 0
[2026-01-27 21:46:52] 2026-01-27 20:46:40,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 21:46:52] 2026-01-27 20:46:52,512 | INFO     | PID=1014632 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 21:46:52] 2026-01-27 20:46:52,513 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 21:46:52] 2026-01-27 20:46:52,513 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 21:46:52] 2026-01-27 20:46:52,513 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 21:46:52] 2026-01-27 20:46:52,513 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 21:46:52] 2026-01-27 20:46:52,513 | INFO     | [monitor] control thread has ended
[2026-01-27 21:46:52] 2026-01-27 20:46:52,582 [wrapper] ==== pilot stdout END ====
[2026-01-27 21:46:52] 2026-01-27 20:46:52,586 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 21:46:52] 2026-01-27 20:46:52,590 [wrapper] pilotpid: 1014632
[2026-01-27 21:46:52] 2026-01-27 20:46:52,594 [wrapper] Pilot exit status: 0
[2026-01-27 21:46:52] 2026-01-27 20:46:52,604 [wrapper] pandaids: 6984043708
[2026-01-27 21:46:52] 2026-01-27 20:46:52,631 [wrapper] cleanup supervisor_pilot 1028716 1014633
[2026-01-27 21:46:52] 2026-01-27 20:46:52,634 [wrapper] Test setup, not cleaning
[2026-01-27 21:46:52] 2026-01-27 20:46:52,638 [wrapper] apfmon messages muted
[2026-01-27 21:46:52] 2026-01-27 20:46:52,642 [wrapper] ==== wrapper stdout END ====
[2026-01-27 21:46:52] 2026-01-27 20:46:52,646 [wrapper] ==== wrapper stderr END ====
[2026-01-27 21:46:52]  *** Error codes and diagnostics ***
[2026-01-27 21:46:52]     "exeErrorCode": 0,
[2026-01-27 21:46:52]     "exeErrorDiag": "",
[2026-01-27 21:46:52]     "pilotErrorCode": 0,
[2026-01-27 21:46:52]     "pilotErrorDiag": "",
[2026-01-27 21:46:52]  *** Listing of results directory ***
[2026-01-27 21:46:52] total 664220
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 21:46:52] -rwx------ 1 boinc boinc     36322 Jan 26 06:14 runpilot2-wrapper.sh
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:15 queuedata.json
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc       100 Jan 27 20:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 21:46:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 20:34 run_atlas
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc       105 Jan 27 20:34 job.xml
[2026-01-27 21:46:52] -rw-r--r-- 2 boinc boinc 489710000 Jan 27 20:34 EVNT.48317869._000048.pool.root.1
[2026-01-27 21:46:52] -rw-r--r-- 2 boinc boinc    597751 Jan 27 20:34 input.tar.gz
[2026-01-27 21:46:52] -rw-r--r-- 2 boinc boinc     15845 Jan 27 20:34 start_atlas.sh
[2026-01-27 21:46:52] drwxrwx--x 2 boinc boinc      4096 Jan 27 20:34 shared
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc         0 Jan 27 20:34 boinc_setup_complete
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc      6371 Jan 27 20:34 init_data.xml
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc         0 Jan 27 20:34 boinc_lockfile
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc      2513 Jan 27 20:34 pandaJob.out
[2026-01-27 21:46:52] -rw------- 1 boinc boinc   1005244 Jan 27 20:34 agis_schedconf.cvmfs.json
[2026-01-27 21:46:52] -rw------- 1 boinc boinc   1516246 Jan 27 20:34 agis_ddmendpoints.agis.ALL.json
[2026-01-27 21:46:52] -rw------- 1 boinc boinc       430 Jan 27 20:34 workernode_map.json
[2026-01-27 21:46:52] drwx------ 5 boinc boinc      4096 Jan 27 20:34 pilot3
[2026-01-27 21:46:52] -rw------- 1 boinc boinc 184727740 Jan 27 21:45 HITS.48317872._002376.pool.root.1
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc       530 Jan 27 21:46 boinc_task_state.xml
[2026-01-27 21:46:52] -rw------- 1 boinc boinc      1032 Jan 27 21:46 memory_monitor_summary.json
[2026-01-27 21:46:52] -rw------- 1 boinc boinc    259055 Jan 27 21:46 log.48317872._002376.job.log.tgz.1
[2026-01-27 21:46:52] -rw------- 1 boinc boinc      6318 Jan 27 21:46 heartbeat.json
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc      8192 Jan 27 21:46 boinc_mmap_file
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc        27 Jan 27 21:46 wrapper_checkpoint.txt
[2026-01-27 21:46:52] -rw------- 1 boinc boinc       747 Jan 27 21:46 pilotlog.txt
[2026-01-27 21:46:52] -rw------- 1 boinc boinc        95 Jan 27 21:46 pilot_heartbeat.json
[2026-01-27 21:46:52] -rw------- 1 boinc boinc    637467 Jan 27 21:46 log.48317872._002376.job.log.1
[2026-01-27 21:46:52] -rw------- 1 boinc boinc       357 Jan 27 21:46 output.list
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc       620 Jan 27 21:46 runtime_log
[2026-01-27 21:46:52] -rw------- 1 boinc boinc    911360 Jan 27 21:46 result.tar.gz
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc      8911 Jan 27 21:46 runtime_log.err
[2026-01-27 21:46:52] -rw------- 1 boinc boinc       660 Jan 27 21:46 VG4MDm96T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ68KDmuzR5To.diag
[2026-01-27 21:46:52] -rw-r--r-- 1 boinc boinc     12669 Jan 27 21:46 stderr.txt
[2026-01-27 21:46:52] HITS file was successfully produced:
[2026-01-27 21:46:52] -rw------- 1 boinc boinc 184727740 Jan 27 21:45 shared/HITS.pool.root.1
[2026-01-27 21:46:52]  *** Contents of shared directory: ***
[2026-01-27 21:46:52] total 660136
[2026-01-27 21:46:52] -rw-r--r-- 2 boinc boinc 489710000 Jan 27 20:34 ATLAS.root_0
[2026-01-27 21:46:52] -rw-r--r-- 2 boinc boinc    597751 Jan 27 20:34 input.tar.gz
[2026-01-27 21:46:52] -rw-r--r-- 2 boinc boinc     15845 Jan 27 20:34 start_atlas.sh
[2026-01-27 21:46:52] -rw------- 1 boinc boinc 184727740 Jan 27 21:45 HITS.pool.root.1
[2026-01-27 21:46:52] -rw------- 1 boinc boinc    911360 Jan 27 21:46 result.tar.gz
21:46:53 (1010471): run_atlas exited; CPU time 16295.916595
21:46:53 (1010471): called boinc_finish(0)

</stderr_txt>
]]>

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