Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:34:34 (501621): wrapper (7.7.26015): starting
06:34:34 (501621): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 06:34:34] Arguments: --nthreads 12
[2026-01-27 06:34:34] Threads: 12
[2026-01-27 06:34:34] Checking for CVMFS
[2026-01-27 06:34:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 06:34:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 06:34:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 06:34:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 06:34:35] 2.13.3.0 6794 515 53736 155583 2 188 5478108 6144001 3550 130560 0 1597068 99.997 19550 356 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-27 06:34:35] CVMFS is ok
[2026-01-27 06:34:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 06:34:35] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-27 06:34:35] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-27 06:34:35] Further information can be found at the LHC@home message board.
[2026-01-27 06:34:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 06:34:35] Checking for apptainer binary...
[2026-01-27 06:34:35] apptainer is not installed, using version from CVMFS
[2026-01-27 06:34:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 06:34:36] XeonFire
[2026-01-27 06:34:36] apptainer works
[2026-01-27 06:34:36] Set ATHENA_PROC_NUMBER=12
[2026-01-27 06:34:36] Set ATHENA_CORE_NUMBER=12
[2026-01-27 06:34:36] Starting ATLAS job with PandaID=6983772206
[2026-01-27 06:34:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 07:39:07]  *** The last 200 lines of the pilot log: ***
[2026-01-27 07:39:07]  filetype=log
[2026-01-27 07:39:07]  guid=325df361-6285-4ee6-bc36-c0eed159472a
[2026-01-27 07:39:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 07:39:07]  is_altstaged=None
[2026-01-27 07:39:07]  is_tar=False
[2026-01-27 07:39:07]  lfn=log.48318034._002451.job.log.tgz.1
[2026-01-27 07:39:07]  mtime=0
[2026-01-27 07:39:07]  protocol_id=None
[2026-01-27 07:39:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 07:39:07]  replicas=None
[2026-01-27 07:39:07]  scope=mc23_13p6TeV
[2026-01-27 07:39:07]  status=None
[2026-01-27 07:39:07]  status_code=0
[2026-01-27 07:39:07]  storage_token=
[2026-01-27 07:39:07]  surl=/var/lib/boinc-client/slots/6/PanDA_Pilot-6983772206/log.48318034._002451.job.log.tgz.1
[2026-01-27 07:39:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/15/log.48318034._002451.job.log.tgz.1
[2026-01-27 07:39:07]  workdir=None
[2026-01-27 07:39:07] ]
[2026-01-27 07:39:07] 2026-01-27 13:37:56,398 | INFO     | transferring file log.48318034._002451.job.log.tgz.1 from /var/lib/boinc-client/slots/6/PanDA_Pilot-6983772206/log.48318034._002451.job.log.tgz.1 to /var/lib/boinc
[2026-01-27 07:39:07] 2026-01-27 13:37:56,398 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/6/PanDA_Pilot-6983772206/log.48318034._002451.job.log.tgz.1 /var/lib/boinc-client/slots/6/log.483180
[2026-01-27 07:39:07] 2026-01-27 13:37:56,423 | INFO     | adding to output.list: log.48318034._002451.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/15/log.48318034._002451.job.log.tg
[2026-01-27 07:39:07] 2026-01-27 13:37:56,424 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 07:39:07] 2026-01-27 13:37:56,424 | INFO     | summary of transferred files:
[2026-01-27 07:39:07] 2026-01-27 13:37:56,424 | INFO     |  -- lfn=log.48318034._002451.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 07:39:07] 2026-01-27 13:37:56,425 | INFO     | stage-out finished correctly
[2026-01-27 07:39:07] 2026-01-27 13:37:56,488 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 07:39:07] 2026-01-27 13:37:57,015 | INFO     | time since job start (3782s) is within the limit (349056.0s)
[2026-01-27 07:39:07] 2026-01-27 13:37:57,469 | INFO     | monitor loop #280: job 0:6983772206 is in state 'finished'
[2026-01-27 07:39:07] 2026-01-27 13:37:57,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,018 | INFO     | time since job start (3784s) is within the limit (349056.0s)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,236 | INFO     | job 6983772206 has state=finished
[2026-01-27 07:39:07] 2026-01-27 13:37:59,237 | INFO     | preparing for final server update for job 6983772206 in state='finished'
[2026-01-27 07:39:07] 2026-01-27 13:37:59,237 | INFO     | reading metadata from: /var/lib/boinc-client/slots/6/PanDA_Pilot-6983772206/jobReport.json
[2026-01-27 07:39:07] 2026-01-27 13:37:59,240 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/6/workernode_map.json
[2026-01-27 07:39:07] 2026-01-27 13:37:59,240 | INFO     | this job has now completed (state=finished)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,241 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,241 | INFO     | log transfer has been attempted: DONE
[2026-01-27 07:39:07] 2026-01-27 13:37:59,241 | INFO     | job 6983772206 has finished - writing final server update
[2026-01-27 07:39:07] 2026-01-27 13:37:59,241 | INFO     | total number of processed events: 400 (read)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,258 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6983772206/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,259 | INFO     | extracted standard info from prmon json
[2026-01-27 07:39:07] 2026-01-27 13:37:59,259 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 07:39:07] 2026-01-27 13:37:59,259 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 07:39:07] 2026-01-27 13:37:59,259 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 07:39:07] 2026-01-27 13:37:59,259 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 07:39:07] 2026-01-27 13:37:59,261 | INFO     | fitting pss+swap vs Time
[2026-01-27 07:39:07] 2026-01-27 13:37:59,261 | INFO     | sum of square deviations: 51573060.0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,262 | INFO     | sum of deviations: 1481173147.0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,262 | INFO     | mean x: 1769519269.0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,262 | INFO     | mean y: 2658599.2181818183
[2026-01-27 07:39:07] 2026-01-27 13:37:59,262 | INFO     | intersect: -50817758578.70125
[2026-01-27 07:39:07] 2026-01-27 13:37:59,263 | INFO     | chi2: 0.026827938449847204
[2026-01-27 07:39:07] 2026-01-27 13:37:59,263 | INFO     | current memory leak: 28.72 B/s (using 55 data points, chi2=0.03)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,263 | INFO     | could have reported an average CPU frequency of 2367 MHz (6 samples)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,263 | INFO     | ..............................
[2026-01-27 07:39:07] 2026-01-27 13:37:59,263 | INFO     | . Timing measurements:
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . get job = 0 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . initial setup = 9 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . payload setup = 5 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . stage-in = 0 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . payload execution = 3758 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . stage-out = 0 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | . log creation = 0 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,264 | INFO     | ..............................
[2026-01-27 07:39:07] 2026-01-27 13:37:59,371 | INFO     | 
[2026-01-27 07:39:07] 2026-01-27 13:37:59,371 | INFO     | job summary report
[2026-01-27 07:39:07] 2026-01-27 13:37:59,371 | INFO     | --------------------------------------------------
[2026-01-27 07:39:07] 2026-01-27 13:37:59,371 | INFO     | PanDA job id: 6983772206
[2026-01-27 07:39:07] 2026-01-27 13:37:59,371 | INFO     | task id: 48318034
[2026-01-27 07:39:07] 2026-01-27 13:37:59,371 | INFO     | errors: (none)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | pilot state: finished 
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | transexitcode: 0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | exeerrorcode: 0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | exeerrordiag: 
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | exitcode: 0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | exitmsg: OK
[2026-01-27 07:39:07] 2026-01-27 13:37:59,372 | INFO     | cpuconsumptiontime: 39808 s
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | nevents: 400
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | neventsw: 0
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | pid: 510463
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | pgrp: 510463
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | corecount: 12
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | event service: False
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | sizes: {0: 2283938, 1: 2284200, 11: 2284228, 3767: 2310047, 3769: 2319059, 3770: 2319115, 3772: 2319437}
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | --------------------------------------------------
[2026-01-27 07:39:07] 2026-01-27 13:37:59,373 | INFO     | 
[2026-01-27 07:39:07] 2026-01-27 13:37:59,374 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2026-01-27 07:39:07] 2026-01-27 13:37:59,404 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,405 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,405 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,405 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 07:39:07] 2026-01-27 13:37:59,407 | INFO     | job 6983772206 has completed (purged errors)
[2026-01-27 07:39:07] 2026-01-27 13:37:59,408 | INFO     | overall cleanup function is called
[2026-01-27 07:39:07] 2026-01-27 13:38:00,416 | INFO     | --- collectZombieJob: --- 10, [510463]
[2026-01-27 07:39:07] 2026-01-27 13:38:00,416 | INFO     | zombie collector waiting for pid 510463
[2026-01-27 07:39:07] 2026-01-27 13:38:00,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 07:39:07] 2026-01-27 13:38:00,416 | INFO     | collected zombie processes
[2026-01-27 07:39:07] 2026-01-27 13:38:00,417 | INFO     | will attempt to kill all subprocesses of pid=510463
[2026-01-27 07:39:07] 2026-01-27 13:38:00,869 | INFO     | process IDs to be killed: [510463] (in reverse order)
[2026-01-27 07:39:07] 2026-01-27 13:38:01,020 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 07:39:07] 2026-01-27 13:38:01,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 07:39:07] 2026-01-27 13:38:01,029 | INFO     | did not find any defunct processes belonging to 510463
[2026-01-27 07:39:07] 2026-01-27 13:38:01,037 | INFO     | did not find any defunct processes belonging to 510463
[2026-01-27 07:39:07] 2026-01-27 13:38:01,038 | INFO     | ready for new job
[2026-01-27 07:39:07] 2026-01-27 13:38:01,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 07:39:07] 2026-01-27 13:38:01,039 | INFO     | **************************************
[2026-01-27 07:39:07] 2026-01-27 13:38:01,040 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 07:39:07] 2026-01-27 13:38:01,040 | INFO     | **************************************
[2026-01-27 07:39:07] 2026-01-27 13:38:01,040 | INFO     | 
[2026-01-27 07:39:07] 2026-01-27 13:38:01,045 | INFO     | architecture information:
[2026-01-27 07:39:07] 2026-01-27 13:38:01,045 | INFO     | executing command: cat /etc/os-release
[2026-01-27 07:39:07] 2026-01-27 13:38:01,062 | INFO     | cat /etc/os-release:
[2026-01-27 07:39:07] NAME="CentOS Linux"
[2026-01-27 07:39:07] VERSION="7 (Core)"
[2026-01-27 07:39:07] ID="centos"
[2026-01-27 07:39:07] ID_LIKE="rhel fedora"
[2026-01-27 07:39:07] VERSION_ID="7"
[2026-01-27 07:39:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 07:39:07] ANSI_COLOR="0;31"
[2026-01-27 07:39:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 07:39:07] HOME_URL="https://www.centos.org/"
[2026-01-27 07:39:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 07:39:07] 
[2026-01-27 07:39:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 07:39:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 07:39:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 07:39:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 07:39:07] 
[2026-01-27 07:39:07] 2026-01-27 13:38:01,062 | INFO     | **************************************
[2026-01-27 07:39:07] 2026-01-27 13:38:01,565 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2026-01-27 07:39:07] 2026-01-27 13:38:01,581 | INFO     | sufficient remaining disk space (1786393919488 B)
[2026-01-27 07:39:07] 2026-01-27 13:38:01,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 07:39:07] 2026-01-27 13:38:01,582 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 07:39:07] 2026-01-27 13:38:01,582 | INFO     | update_server=False
[2026-01-27 07:39:07] 2026-01-27 13:38:01,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 07:39:07] 2026-01-27 13:38:01,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:39:07] 2026-01-27 13:38:01,583 | INFO     | aborting loop
[2026-01-27 07:39:07] 2026-01-27 13:38:01,834 | INFO     | all data control threads have been joined
[2026-01-27 07:39:07] 2026-01-27 13:38:01,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 07:39:07] 2026-01-27 13:38:02,030 | INFO     | all job control threads have been joined
[2026-01-27 07:39:07] 2026-01-27 13:38:02,587 | INFO     | [job] retrieve thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:02,588 | INFO     | [job] job monitor thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:02,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 07:39:07] 2026-01-27 13:38:02,839 | INFO     | [data] control thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:02,848 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:02,898 | INFO     | [payload] failed_post thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:03,000 | INFO     | [job] validate thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:03,035 | INFO     | [job] control thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:03,049 | INFO     | all payload control threads have been joined
[2026-01-27 07:39:07] 2026-01-27 13:38:03,256 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:03,445 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:03,496 | INFO     | [payload] validate_post thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:03,707 | INFO     | [data] copytool_in thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:04,001 | INFO     | [data] copytool_out thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:04,054 | INFO     | [payload] control thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:04,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:39:07] 2026-01-27 13:38:05,385 | INFO     | [job] queue monitor thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:06,602 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:11,932 | INFO     | job.realtimelogging is not enabled
[2026-01-27 07:39:07] 2026-01-27 13:38:12,937 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 07:39:07] 2026-01-27 13:38:32,592 | INFO     | PID=505668 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 07:39:07] 2026-01-27 13:38:32,592 | INFO     | .. there are 5 such processes running
[2026-01-27 07:39:07] 2026-01-27 13:38:32,593 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 07:39:07] 2026-01-27 13:38:32,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 07:39:07] 2026-01-27 13:38:32,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 07:39:07] 2026-01-27 13:39:00,924 | INFO     | [monitor] cgroup control has ended
[2026-01-27 07:39:07] 2026-01-27 13:39:02,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138116801292096)>', '<ExcThread(monitor, started 138116241270528)>']
[2026-01-27 07:39:07] 2026-01-27 13:39:02,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 07:39:07] 2026-01-27 13:39:02,735 | INFO     | [monitor] control thread has ended
[2026-01-27 07:39:07] 2026-01-27 13:39:07,259 | INFO     | all workflow threads have been joined
[2026-01-27 07:39:07] 2026-01-27 13:39:07,259 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 07:39:07] 2026-01-27 13:39:07,260 | INFO     | traces error code: 0
[2026-01-27 07:39:07] 2026-01-27 13:39:07,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 07:39:07] 2026-01-27 13:39:07,371 [wrapper] ==== pilot stdout END ====
[2026-01-27 07:39:07] 2026-01-27 13:39:07,374 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 07:39:07] 2026-01-27 13:39:07,377 [wrapper] pilotpid: 505668
[2026-01-27 07:39:07] 2026-01-27 13:39:07,380 [wrapper] Pilot exit status: 0
[2026-01-27 07:39:07] 2026-01-27 13:39:07,391 [wrapper] pandaids: 6983772206
[2026-01-27 07:39:07] 2026-01-27 13:39:07,464 [wrapper] cleanup supervisor_pilot  561425 505669
[2026-01-27 07:39:07] 2026-01-27 13:39:07,471 [wrapper] Test setup, not cleaning
[2026-01-27 07:39:07] 2026-01-27 13:39:07,476 [wrapper] apfmon messages muted
[2026-01-27 07:39:07] 2026-01-27 13:39:07,482 [wrapper] ==== wrapper stdout END ====
[2026-01-27 07:39:07] 2026-01-27 13:39:07,485 [wrapper] ==== wrapper stderr END ====
[2026-01-27 07:39:07]  *** Error codes and diagnostics ***
[2026-01-27 07:39:07]     "exeErrorCode": 0,
[2026-01-27 07:39:07]     "exeErrorDiag": "",
[2026-01-27 07:39:07]     "pilotErrorCode": 0,
[2026-01-27 07:39:07]     "pilotErrorDiag": "",
[2026-01-27 07:39:07]  *** Listing of results directory ***
[2026-01-27 07:39:07] total 670056
[2026-01-27 07:39:07] -rwx------ 1 mark mark     36322 Jan 25 21:17 runpilot2-wrapper.sh
[2026-01-27 07:39:07] -rw-r--r-- 1 mark mark      5111 Jan 25 21:19 queuedata.json
[2026-01-27 07:39:07] -rw-r--r-- 1 mark mark    584422 Jan 25 21:19 pilot3.tar.gz
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark       100 Jan 27 06:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 07:39:07] -rwxr-xr-x 1 mark mark      7986 Jan 27 06:34 run_atlas
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark       105 Jan 27 06:34 job.xml
[2026-01-27 07:39:07] -rw-r--r-- 2 mark mark 495287642 Jan 27 06:34 EVNT.48318032._000063.pool.root.1
[2026-01-27 07:39:07] drwxrwx--x 2 mark mark      4096 Jan 27 06:34 shared
[2026-01-27 07:39:07] -rw-r--r-- 2 mark mark    597762 Jan 27 06:34 input.tar.gz
[2026-01-27 07:39:07] -rw-r--r-- 2 mark mark     15845 Jan 27 06:34 start_atlas.sh
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark      9265 Jan 27 06:34 init_data.xml
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark         0 Jan 27 06:34 boinc_setup_complete
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark         0 Jan 27 06:34 boinc_lockfile
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark      2529 Jan 27 06:34 pandaJob.out
[2026-01-27 07:39:07] -rw------- 1 mark mark   1002853 Jan 27 06:34 agis_schedconf.cvmfs.json
[2026-01-27 07:39:07] -rw------- 1 mark mark   1516246 Jan 27 06:34 agis_ddmendpoints.agis.ALL.json
[2026-01-27 07:39:07] -rw------- 1 mark mark       432 Jan 27 06:34 workernode_map.json
[2026-01-27 07:39:07] drwx------ 5 mark mark      4096 Jan 27 06:34 pilot3
[2026-01-27 07:39:07] -rw------- 1 mark mark 185059274 Jan 27 07:37 HITS.48318034._002451.pool.root.1
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark       530 Jan 27 07:37 boinc_task_state.xml
[2026-01-27 07:39:07] -rw------- 1 mark mark      1034 Jan 27 07:37 memory_monitor_summary.json
[2026-01-27 07:39:07] -rw------- 1 mark mark    358344 Jan 27 07:37 log.48318034._002451.job.log.tgz.1
[2026-01-27 07:39:07] -rw------- 1 mark mark      6339 Jan 27 07:37 heartbeat.json
[2026-01-27 07:39:07] -rw------- 1 mark mark        95 Jan 27 07:38 pilot_heartbeat.json
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark        27 Jan 27 07:39 wrapper_checkpoint.txt
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark      8192 Jan 27 07:39 boinc_mmap_file
[2026-01-27 07:39:07] -rw------- 1 mark mark      4899 Jan 27 07:39 pilotlog.txt
[2026-01-27 07:39:07] -rw------- 1 mark mark    565760 Jan 27 07:39 log.48318034._002451.job.log.1
[2026-01-27 07:39:07] -rw------- 1 mark mark       357 Jan 27 07:39 output.list
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark       620 Jan 27 07:39 runtime_log
[2026-01-27 07:39:07] -rw------- 1 mark mark    942080 Jan 27 07:39 result.tar.gz
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark      8886 Jan 27 07:39 runtime_log.err
[2026-01-27 07:39:07] -rw------- 1 mark mark       645 Jan 27 07:39 C8jKDm8HS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiw8KDmW2g6xn.diag
[2026-01-27 07:39:07] -rw-rw-r-- 1 mark mark     21390 Jan 27 07:39 stderr.txt
[2026-01-27 07:39:07] HITS file was successfully produced:
[2026-01-27 07:39:07] -rw------- 1 mark mark 185059274 Jan 27 07:37 shared/HITS.pool.root.1
[2026-01-27 07:39:07]  *** Contents of shared directory: ***
[2026-01-27 07:39:07] total 665932
[2026-01-27 07:39:07] -rw-r--r-- 2 mark mark 495287642 Jan 27 06:34 ATLAS.root_0
[2026-01-27 07:39:07] -rw-r--r-- 2 mark mark    597762 Jan 27 06:34 input.tar.gz
[2026-01-27 07:39:07] -rw-r--r-- 2 mark mark     15845 Jan 27 06:34 start_atlas.sh
[2026-01-27 07:39:07] -rw------- 1 mark mark 185059274 Jan 27 07:37 HITS.pool.root.1
[2026-01-27 07:39:07] -rw------- 1 mark mark    942080 Jan 27 07:39 result.tar.gz
07:39:10 (501621): run_atlas exited; CPU time 39965.249968
07:39:10 (501621): called boinc_finish(0)

</stderr_txt>
]]>

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