Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:18:24 (635553): wrapper (7.7.26015): starting
04:18:24 (635553): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 04:18:24] Arguments: --nthreads 12
[2026-01-27 04:18:24] Threads: 12
[2026-01-27 04:18:24] Checking for CVMFS
[2026-01-27 04:18:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:18:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:18:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:18:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:18:24] 2.13.3.0 194132 497 50720 155573 3 11 3118839 4096000 922 130560 0 1315134 99.996 22016 732 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-27 04:18:24] CVMFS is ok
[2026-01-27 04:18:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:18:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 04:18:24] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-27 04:18:24] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-27 04:18:24] Further information can be found at the LHC@home message board.
[2026-01-27 04:18:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:18:24] Checking for apptainer binary...
[2026-01-27 04:18:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:18:24] Running /usr/bin/apptainer --version
[2026-01-27 04:18:24] apptainer version 1.4.5
[2026-01-27 04:18:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:18:24] test-run
[2026-01-27 04:18:24] apptainer works
[2026-01-27 04:18:24] Set ATHENA_PROC_NUMBER=12
[2026-01-27 04:18:24] Set ATHENA_CORE_NUMBER=12
[2026-01-27 04:18:24] Starting ATLAS job with PandaID=6984042507
[2026-01-27 04:18:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 04:47:45]  *** The last 200 lines of the pilot log: ***
[2026-01-27 04:47:45]  mtime=0
[2026-01-27 04:47:45]  protocol_id=None
[2026-01-27 04:47:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 04:47:45]  replicas=None
[2026-01-27 04:47:45]  scope=mc23_13p6TeV
[2026-01-27 04:47:45]  status=None
[2026-01-27 04:47:45]  status_code=0
[2026-01-27 04:47:45]  storage_token=
[2026-01-27 04:47:45]  surl=/var/lib/boinc-client/slots/7/PanDA_Pilot-6984042507/log.47929392._005208.job.log.tgz.1
[2026-01-27 04:47:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/0e/log.47929392._005208.job.log.tgz.1
[2026-01-27 04:47:45]  workdir=None
[2026-01-27 04:47:45] ]
[2026-01-27 04:47:45] 2026-01-27 04:47:17,443 | INFO     | transferring file log.47929392._005208.job.log.tgz.1 from /var/lib/boinc-client/slots/7/PanDA_Pilot-6984042507/log.47929392._005208.job.log.tgz.1 to /var/lib/boinc
[2026-01-27 04:47:45] 2026-01-27 04:47:17,443 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-6984042507/log.47929392._005208.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.479293
[2026-01-27 04:47:45] 2026-01-27 04:47:17,449 | INFO     | adding to output.list: log.47929392._005208.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/0e/log.47929392._005208.job.log.tg
[2026-01-27 04:47:45] 2026-01-27 04:47:17,450 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 04:47:45] 2026-01-27 04:47:17,450 | INFO     | summary of transferred files:
[2026-01-27 04:47:45] 2026-01-27 04:47:17,450 | INFO     |  -- lfn=log.47929392._005208.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 04:47:45] 2026-01-27 04:47:17,450 | INFO     | stage-out finished correctly
[2026-01-27 04:47:45] 2026-01-27 04:47:18,255 | INFO     | monitor loop #136: job 0:6984042507 is in state 'finished'
[2026-01-27 04:47:45] 2026-01-27 04:47:18,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 04:47:45] 2026-01-27 04:47:19,123 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 04:47:45] 2026-01-27 04:47:19,430 | INFO     | time since job start (1723s) is within the limit (349056.0s)
[2026-01-27 04:47:45] 2026-01-27 04:47:20,457 | INFO     | PID=639742 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 04:47:45] 2026-01-27 04:47:20,457 | INFO     | .. there are 2 such processes running
[2026-01-27 04:47:45] 2026-01-27 04:47:20,758 | INFO     | monitor loop #137: job 0:6984042507 is in state 'finished'
[2026-01-27 04:47:45] 2026-01-27 04:47:20,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,457 | INFO     | time since job start (1725s) is within the limit (349056.0s)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,542 | INFO     | job 6984042507 has state=finished
[2026-01-27 04:47:45] 2026-01-27 04:47:21,542 | INFO     | preparing for final server update for job 6984042507 in state='finished'
[2026-01-27 04:47:45] 2026-01-27 04:47:21,542 | INFO     | reading metadata from: /var/lib/boinc-client/slots/7/PanDA_Pilot-6984042507/jobReport.json
[2026-01-27 04:47:45] 2026-01-27 04:47:21,543 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/7/workernode_map.json
[2026-01-27 04:47:45] 2026-01-27 04:47:21,543 | INFO     | this job has now completed (state=finished)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,543 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,543 | INFO     | log transfer has been attempted: DONE
[2026-01-27 04:47:45] 2026-01-27 04:47:21,543 | INFO     | job 6984042507 has finished - writing final server update
[2026-01-27 04:47:45] 2026-01-27 04:47:21,543 | INFO     | total number of processed events: 400 (read)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6984042507/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | extracted standard info from prmon json
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | fitting pss+swap vs Time
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | sum of square deviations: 2865170.0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | sum of deviations: 447517289.0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | mean x: 1769488448.0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,544 | INFO     | mean y: 3107941.9523809524
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | intersect: -276377237086.71173
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | chi2: 0.028500849596402734
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | current memory leak: 156.19 B/s (using 21 data points, chi2=0.03)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | could have reported an average CPU frequency of 4291 MHz (4 samples)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | ..............................
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . Timing measurements:
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . get job = 0 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . initial setup = 5 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . payload setup = 2 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . stage-in = 0 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . payload execution = 1703 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . stage-out = 0 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | . log creation = 0 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,545 | INFO     | ..............................
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | 
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | job summary report
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | --------------------------------------------------
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | PanDA job id: 6984042507
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | task id: 47929392
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | errors: (none)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | pilot state: finished 
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | transexitcode: 0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | exeerrorcode: 0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | exeerrordiag: 
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | exitcode: 0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | exitmsg: OK
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | cpuconsumptiontime: 16403 s
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | nevents: 400
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | neventsw: 0
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | pid: 644306
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | pgrp: 644306
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | corecount: 12
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | event service: False
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | sizes: {0: 2284287, 10: 2284287, 1710: 2318178, 1712: 2318178, 1714: 2318372}
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | --------------------------------------------------
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | 
[2026-01-27 04:47:45] 2026-01-27 04:47:21,668 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | job 6984042507 has completed (purged errors)
[2026-01-27 04:47:45] 2026-01-27 04:47:21,685 | INFO     | overall cleanup function is called
[2026-01-27 04:47:45] 2026-01-27 04:47:22,691 | INFO     | --- collectZombieJob: --- 10, [644306]
[2026-01-27 04:47:45] 2026-01-27 04:47:22,691 | INFO     | zombie collector waiting for pid 644306
[2026-01-27 04:47:45] 2026-01-27 04:47:22,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 04:47:45] 2026-01-27 04:47:22,691 | INFO     | collected zombie processes
[2026-01-27 04:47:45] 2026-01-27 04:47:22,691 | INFO     | will attempt to kill all subprocesses of pid=644306
[2026-01-27 04:47:45] 2026-01-27 04:47:22,710 | INFO     | process IDs to be killed: [644306] (in reverse order)
[2026-01-27 04:47:45] 2026-01-27 04:47:22,730 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 04:47:45] 2026-01-27 04:47:22,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 04:47:45] 2026-01-27 04:47:22,731 | INFO     | did not find any defunct processes belonging to 644306
[2026-01-27 04:47:45] 2026-01-27 04:47:22,732 | INFO     | did not find any defunct processes belonging to 644306
[2026-01-27 04:47:45] 2026-01-27 04:47:22,732 | INFO     | ready for new job
[2026-01-27 04:47:45] 2026-01-27 04:47:22,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 04:47:45] 2026-01-27 04:47:22,733 | INFO     | **************************************
[2026-01-27 04:47:45] 2026-01-27 04:47:22,733 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 04:47:45] 2026-01-27 04:47:22,733 | INFO     | **************************************
[2026-01-27 04:47:45] 2026-01-27 04:47:22,733 | INFO     | 
[2026-01-27 04:47:45] 2026-01-27 04:47:22,733 | INFO     | pilot is running in a VM
[2026-01-27 04:47:45] 2026-01-27 04:47:22,734 | INFO     | architecture information:
[2026-01-27 04:47:45] 2026-01-27 04:47:22,734 | INFO     | executing command: cat /etc/os-release
[2026-01-27 04:47:45] 2026-01-27 04:47:22,740 | INFO     | cat /etc/os-release:
[2026-01-27 04:47:45] NAME="CentOS Linux"
[2026-01-27 04:47:45] VERSION="7 (Core)"
[2026-01-27 04:47:45] ID="centos"
[2026-01-27 04:47:45] ID_LIKE="rhel fedora"
[2026-01-27 04:47:45] VERSION_ID="7"
[2026-01-27 04:47:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 04:47:45] ANSI_COLOR="0;31"
[2026-01-27 04:47:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 04:47:45] HOME_URL="https://www.centos.org/"
[2026-01-27 04:47:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 04:47:45] 
[2026-01-27 04:47:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 04:47:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 04:47:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 04:47:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 04:47:45] 
[2026-01-27 04:47:45] 2026-01-27 04:47:22,740 | INFO     | **************************************
[2026-01-27 04:47:45] 2026-01-27 04:47:23,243 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | INFO     | sufficient remaining disk space (67012395008 B)
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | INFO     | update_server=False
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 04:47:45] 2026-01-27 04:47:23,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 04:47:45] 2026-01-27 04:47:23,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 04:47:45] 2026-01-27 04:47:23,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:47:45] 2026-01-27 04:47:23,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 04:47:45] 2026-01-27 04:47:23,261 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 04:47:45] 2026-01-27 04:47:23,261 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 04:47:45] 2026-01-27 04:47:23,261 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:47:45] 2026-01-27 04:47:23,261 | INFO     | will abort loop
[2026-01-27 04:47:45] 2026-01-27 04:47:23,614 | INFO     | all payload control threads have been joined
[2026-01-27 04:47:45] 2026-01-27 04:47:23,869 | INFO     | all data control threads have been joined
[2026-01-27 04:47:45] 2026-01-27 04:47:23,881 | INFO     | all job control threads have been joined
[2026-01-27 04:47:45] 2026-01-27 04:47:24,257 | INFO     | [job] retrieve thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,258 | INFO     | [job] queue monitor thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,266 | INFO     | [job] job monitor thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,300 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,358 | INFO     | [data] copytool_in thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,619 | INFO     | [payload] control thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,652 | INFO     | [payload] validate_post thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,874 | INFO     | [data] control thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:24,886 | INFO     | [job] control thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:25,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 04:47:45] 2026-01-27 04:47:25,258 | INFO     | [data] copytool_out thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:25,588 | INFO     | [job] validate thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:25,721 | INFO     | [payload] failed_post thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:25,733 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:25,757 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:29,152 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:33,582 | INFO     | job.realtimelogging is not enabled
[2026-01-27 04:47:45] 2026-01-27 04:47:34,587 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 04:47:45] 2026-01-27 04:47:39,157 | INFO     | [monitor] cgroup control has ended
[2026-01-27 04:47:45] 2026-01-27 04:47:40,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134778130687808)>', '<ExcThread(monitor, started 134777415923456)>']
[2026-01-27 04:47:45] 2026-01-27 04:47:41,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 04:47:45] 2026-01-27 04:47:41,326 | INFO     | [monitor] control thread has ended
[2026-01-27 04:47:45] 2026-01-27 04:47:45,477 | INFO     | all workflow threads have been joined
[2026-01-27 04:47:45] 2026-01-27 04:47:45,477 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 04:47:45] 2026-01-27 04:47:45,477 | INFO     | traces error code: 0
[2026-01-27 04:47:45] 2026-01-27 04:47:45,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 04:47:45] 2026-01-27 04:47:45,519 [wrapper] ==== pilot stdout END ====
[2026-01-27 04:47:45] 2026-01-27 04:47:45,520 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 04:47:45] 2026-01-27 04:47:45,521 [wrapper] pilotpid: 639742
[2026-01-27 04:47:45] 2026-01-27 04:47:45,522 [wrapper] Pilot exit status: 0
[2026-01-27 04:47:45] 2026-01-27 04:47:45,527 [wrapper] pandaids: 6984042507
[2026-01-27 04:47:45] 2026-01-27 04:47:45,536 [wrapper] cleanup supervisor_pilot  648968 639743
[2026-01-27 04:47:45] 2026-01-27 04:47:45,537 [wrapper] Test setup, not cleaning
[2026-01-27 04:47:45] 2026-01-27 04:47:45,538 [wrapper] apfmon messages muted
[2026-01-27 04:47:45] 2026-01-27 04:47:45,539 [wrapper] ==== wrapper stdout END ====
[2026-01-27 04:47:45] 2026-01-27 04:47:45,539 [wrapper] ==== wrapper stderr END ====
[2026-01-27 04:47:45]  *** Error codes and diagnostics ***
[2026-01-27 04:47:45]     "exeErrorCode": 0,
[2026-01-27 04:47:45]     "exeErrorDiag": "",
[2026-01-27 04:47:45]     "pilotErrorCode": 0,
[2026-01-27 04:47:45]     "pilotErrorDiag": "",
[2026-01-27 04:47:45]  *** Listing of results directory ***
[2026-01-27 04:47:45] total 322272
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc      5111 Jan 26 05:14 queuedata.json
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc    584422 Jan 26 05:14 pilot3.tar.gz
[2026-01-27 04:47:45] -rwx------ 1 boinc boinc     36322 Jan 26 05:14 runpilot2-wrapper.sh
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc       100 Jan 27 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 04:47:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 04:18 run_atlas
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc       105 Jan 27 04:18 job.xml
[2026-01-27 04:47:45] -rw-r--r-- 2 boinc boinc 139119207 Jan 27 04:18 EVNT.47929390._000202.pool.root.1
[2026-01-27 04:47:45] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:18 start_atlas.sh
[2026-01-27 04:47:45] drwxrwx--x 2 boinc boinc      4096 Jan 27 04:18 shared
[2026-01-27 04:47:45] -rw-r--r-- 2 boinc boinc    597762 Jan 27 04:18 input.tar.gz
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc      6941 Jan 27 04:18 init_data.xml
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:18 boinc_lockfile
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc      2550 Jan 27 04:18 pandaJob.out
[2026-01-27 04:47:45] -rw------- 1 boinc boinc   1006441 Jan 27 04:18 agis_schedconf.cvmfs.json
[2026-01-27 04:47:45] -rw------- 1 boinc boinc   1516246 Jan 27 04:18 agis_ddmendpoints.agis.ALL.json
[2026-01-27 04:47:45] -rw------- 1 boinc boinc       420 Jan 27 04:18 workernode_map.json
[2026-01-27 04:47:45] drwx------ 5 boinc boinc      4096 Jan 27 04:18 pilot3
[2026-01-27 04:47:45] -rw------- 1 boinc boinc        95 Jan 27 04:46 pilot_heartbeat.json
[2026-01-27 04:47:45] -rw------- 1 boinc boinc 185696006 Jan 27 04:47 HITS.47929392._005208.pool.root.1
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc       529 Jan 27 04:47 boinc_task_state.xml
[2026-01-27 04:47:45] -rw------- 1 boinc boinc      1014 Jan 27 04:47 memory_monitor_summary.json
[2026-01-27 04:47:45] -rw------- 1 boinc boinc    330669 Jan 27 04:47 log.47929392._005208.job.log.tgz.1
[2026-01-27 04:47:45] -rw------- 1 boinc boinc      6272 Jan 27 04:47 heartbeat.json
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc      8192 Jan 27 04:47 boinc_mmap_file
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc        27 Jan 27 04:47 wrapper_checkpoint.txt
[2026-01-27 04:47:45] -rw------- 1 boinc boinc      4875 Jan 27 04:47 pilotlog.txt
[2026-01-27 04:47:45] -rw------- 1 boinc boinc    292908 Jan 27 04:47 log.47929392._005208.job.log.1
[2026-01-27 04:47:45] -rw------- 1 boinc boinc       357 Jan 27 04:47 output.list
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc       620 Jan 27 04:47 runtime_log
[2026-01-27 04:47:45] -rw------- 1 boinc boinc    645120 Jan 27 04:47 result.tar.gz
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc      8889 Jan 27 04:47 runtime_log.err
[2026-01-27 04:47:45] -rw------- 1 boinc boinc       642 Jan 27 04:47 2CxNDmy6T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6V2KDmdJyERo.diag
[2026-01-27 04:47:45] -rw-r--r-- 1 boinc boinc     21855 Jan 27 04:47 stderr.txt
[2026-01-27 04:47:45] HITS file was successfully produced:
[2026-01-27 04:47:45] -rw------- 1 boinc boinc 185696006 Jan 27 04:47 shared/HITS.pool.root.1
[2026-01-27 04:47:45]  *** Contents of shared directory: ***
[2026-01-27 04:47:45] total 318444
[2026-01-27 04:47:45] -rw-r--r-- 2 boinc boinc 139119207 Jan 27 04:18 ATLAS.root_0
[2026-01-27 04:47:45] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:18 start_atlas.sh
[2026-01-27 04:47:45] -rw-r--r-- 2 boinc boinc    597762 Jan 27 04:18 input.tar.gz
[2026-01-27 04:47:45] -rw------- 1 boinc boinc 185696006 Jan 27 04:47 HITS.pool.root.1
[2026-01-27 04:47:45] -rw------- 1 boinc boinc    645120 Jan 27 04:47 result.tar.gz
04:47:46 (635553): run_atlas exited; CPU time 16407.665737
04:47:46 (635553): called boinc_finish(0)

</stderr_txt>
]]>

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