Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:38:41 (3761232): wrapper (7.7.26015): starting
23:38:41 (3761232): wrapper: running run_atlas (--nthreads 12)
[2026-01-28 23:38:41] Arguments: --nthreads 12
[2026-01-28 23:38:41] Threads: 12
[2026-01-28 23:38:41] Checking for CVMFS
[2026-01-28 23:38:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 23:38:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 23:38:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 23:38:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 23:38:42] 2.13.3.0 3819 7494 80164 155626 2 188 3440845 4096001 16519 130560 0 53619854 99.987 752439 383 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-28 23:38:42] CVMFS is ok
[2026-01-28 23:38:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 23:38:42] Checking for apptainer binary...
[2026-01-28 23:38:42] apptainer is not installed, using version from CVMFS
[2026-01-28 23:38:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 23:38:43] epyc7v12
[2026-01-28 23:38:43] apptainer works
[2026-01-28 23:38:43] Set ATHENA_PROC_NUMBER=12
[2026-01-28 23:38:43] Set ATHENA_CORE_NUMBER=12
[2026-01-28 23:38:43] Starting ATLAS job with PandaID=6983772384
[2026-01-28 23:38:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 01:40:54]  *** The last 200 lines of the pilot log: ***
[2026-01-29 01:40:54] 2026-01-29 01:40:03,219 | INFO     | log transfer has been attempted: DONE
[2026-01-29 01:40:54] 2026-01-29 01:40:03,219 | INFO     | job 6983772384 has finished - writing final server update
[2026-01-29 01:40:54] 2026-01-29 01:40:03,220 | INFO     | total number of processed events: 400 (read)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,272 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/1/PanDA_Pilot-6983772384/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,274 | INFO     | extracted standard info from prmon json
[2026-01-29 01:40:54] 2026-01-29 01:40:03,274 | INFO     | extracted standard memory fields from prmon json
[2026-01-29 01:40:54] 2026-01-29 01:40:03,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-29 01:40:54] 2026-01-29 01:40:03,275 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-29 01:40:54] 2026-01-29 01:40:03,275 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-29 01:40:54] 2026-01-29 01:40:03,277 | INFO     | fitting pss+swap vs Time
[2026-01-29 01:40:54] 2026-01-29 01:40:03,278 | INFO     | sum of square deviations: 509440249.5
[2026-01-29 01:40:54] 2026-01-29 01:40:03,278 | INFO     | sum of deviations: 27128940652.000008
[2026-01-29 01:40:54] 2026-01-29 01:40:03,278 | INFO     | mean x: 1769647176.5
[2026-01-29 01:40:54] 2026-01-29 01:40:03,278 | INFO     | mean y: 2583179.0677966103
[2026-01-29 01:40:54] 2026-01-29 01:40:03,279 | INFO     | intersect: -94235461956.48422
[2026-01-29 01:40:54] 2026-01-29 01:40:03,279 | INFO     | chi2: 3.1305023635756215
[2026-01-29 01:40:54] 2026-01-29 01:40:03,279 | INFO     | sum of square deviations: 447383272.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,280 | INFO     | sum of deviations: 34437244878.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,280 | INFO     | mean x: 1769647024.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,280 | INFO     | mean y: 2600396.6991150444
[2026-01-29 01:40:54] 2026-01-29 01:40:03,280 | INFO     | intersect: -136215653005.30101
[2026-01-29 01:40:54] 2026-01-29 01:40:03,280 | INFO     | chi2: 2.2785707821440715
[2026-01-29 01:40:54] 2026-01-29 01:40:03,281 | INFO     | current chi2=2.2785707821440715 (change=27.21389357005577 %)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,281 | INFO     | sum of square deviations: 390582207.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | sum of deviations: 32813546054.5
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | mean x: 1769646871.5
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | mean y: 2596034.527777778
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | intersect: -148668767067.70154
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | chi2: 2.276391189286168
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | current chi2=2.276391189286168 (change=0.09565614002355693 %)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,282 | INFO     | right removable region: 107
[2026-01-29 01:40:54] 2026-01-29 01:40:03,283 | INFO     | sum of square deviations: 447383272.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,283 | INFO     | sum of deviations: -175437586.00000095
[2026-01-29 01:40:54] 2026-01-29 01:40:03,283 | INFO     | mean x: 1769647329.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,283 | INFO     | mean y: 2649603.1061946903
[2026-01-29 01:40:54] 2026-01-29 01:40:03,284 | INFO     | intersect: 696601914.025655
[2026-01-29 01:40:54] 2026-01-29 01:40:03,284 | INFO     | chi2: 1.020713493505507
[2026-01-29 01:40:54] 2026-01-29 01:40:03,284 | INFO     | current chi2=1.020713493505507 (change=67.39457841074234 %)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,284 | INFO     | sum of square deviations: 390582207.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,285 | INFO     | sum of deviations: -6312963779.5
[2026-01-29 01:40:54] 2026-01-29 01:40:03,285 | INFO     | mean x: 1769647481.5
[2026-01-29 01:40:54] 2026-01-29 01:40:03,285 | INFO     | mean y: 2665834.2685185187
[2026-01-29 01:40:54] 2026-01-29 01:40:03,285 | INFO     | intersect: 28605403626.655712
[2026-01-29 01:40:54] 2026-01-29 01:40:03,285 | INFO     | chi2: 0.8961726913071371
[2026-01-29 01:40:54] 2026-01-29 01:40:03,285 | INFO     | current chi2=0.8961726913071371 (change=12.201347683829567 %)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,286 | INFO     | left removable region: 20
[2026-01-29 01:40:54] 2026-01-29 01:40:03,286 | INFO     | sum of square deviations: 204163828.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,286 | INFO     | sum of deviations: 373370019.9999998
[2026-01-29 01:40:54] 2026-01-29 01:40:03,286 | INFO     | mean x: 1769647451.0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,286 | INFO     | mean y: 2693239.988505747
[2026-01-29 01:40:54] 2026-01-29 01:40:03,286 | INFO     | intersect: -3233596511.459624
[2026-01-29 01:40:54] 2026-01-29 01:40:03,287 | INFO     | chi2: 0.0002030726858426272
[2026-01-29 01:40:54] 2026-01-29 01:40:03,287 | INFO     | current memory leak: 1.83 B/s (using 87 data points, chi2=0.00)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,287 | INFO     | could have reported an average CPU frequency of 2396 MHz (8 samples)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,287 | INFO     | ..............................
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . Timing measurements:
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . get job = 0 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . initial setup = 24 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . payload setup = 16 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . stage-in = 0 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . payload execution = 7198 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . stage-out = 1 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | . log creation = 0 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,288 | INFO     | ..............................
[2026-01-29 01:40:54] 2026-01-29 01:40:03,390 | INFO     | 
[2026-01-29 01:40:54] 2026-01-29 01:40:03,390 | INFO     | job summary report
[2026-01-29 01:40:54] 2026-01-29 01:40:03,390 | INFO     | --------------------------------------------------
[2026-01-29 01:40:54] 2026-01-29 01:40:03,390 | INFO     | PanDA job id: 6983772384
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | task id: 48317872
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | errors: (none)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | pilot state: finished 
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | transexitcode: 0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | exeerrorcode: 0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | exeerrordiag: 
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | exitcode: 0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | exitmsg: OK
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | cpuconsumptiontime: 45511 s
[2026-01-29 01:40:54] 2026-01-29 01:40:03,391 | INFO     | nevents: 400
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | neventsw: 0
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | pid: 3777757
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | pgrp: 3777757
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | corecount: 12
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | event service: False
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | sizes: {0: 2283822, 1: 2284283, 2: 2284283, 7218: 2311865, 7222: 2321079, 7225: 2321287}
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | --------------------------------------------------
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | 
[2026-01-29 01:40:54] 2026-01-29 01:40:03,392 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/1
[2026-01-29 01:40:54] 2026-01-29 01:40:03,446 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,448 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,448 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,448 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,448 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,451 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,452 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 01:40:54] 2026-01-29 01:40:03,452 | INFO     | job 6983772384 has completed (purged errors)
[2026-01-29 01:40:54] 2026-01-29 01:40:03,452 | INFO     | overall cleanup function is called
[2026-01-29 01:40:54] 2026-01-29 01:40:04,471 | INFO     | --- collectZombieJob: --- 10, [3777757]
[2026-01-29 01:40:54] 2026-01-29 01:40:04,471 | INFO     | zombie collector waiting for pid 3777757
[2026-01-29 01:40:54] 2026-01-29 01:40:04,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 01:40:54] 2026-01-29 01:40:04,471 | INFO     | collected zombie processes
[2026-01-29 01:40:54] 2026-01-29 01:40:04,472 | INFO     | will attempt to kill all subprocesses of pid=3777757
[2026-01-29 01:40:54] 2026-01-29 01:40:05,683 | INFO     | process IDs to be killed: [3777757] (in reverse order)
[2026-01-29 01:40:54] 2026-01-29 01:40:06,165 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 01:40:54] 2026-01-29 01:40:06,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 01:40:54] 2026-01-29 01:40:06,202 | INFO     | did not find any defunct processes belonging to 3777757
[2026-01-29 01:40:54] 2026-01-29 01:40:06,237 | INFO     | did not find any defunct processes belonging to 3777757
[2026-01-29 01:40:54] 2026-01-29 01:40:06,239 | INFO     | ready for new job
[2026-01-29 01:40:54] 2026-01-29 01:40:06,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 01:40:54] 2026-01-29 01:40:06,241 | INFO     | **************************************
[2026-01-29 01:40:54] 2026-01-29 01:40:06,241 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 01:40:54] 2026-01-29 01:40:06,241 | INFO     | **************************************
[2026-01-29 01:40:54] 2026-01-29 01:40:06,241 | INFO     | 
[2026-01-29 01:40:54] 2026-01-29 01:40:06,255 | INFO     | architecture information:
[2026-01-29 01:40:54] 2026-01-29 01:40:06,257 | INFO     | executing command: cat /etc/os-release
[2026-01-29 01:40:54] 2026-01-29 01:40:06,303 | INFO     | cat /etc/os-release:
[2026-01-29 01:40:54] NAME="CentOS Linux"
[2026-01-29 01:40:54] VERSION="7 (Core)"
[2026-01-29 01:40:54] ID="centos"
[2026-01-29 01:40:54] ID_LIKE="rhel fedora"
[2026-01-29 01:40:54] VERSION_ID="7"
[2026-01-29 01:40:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 01:40:54] ANSI_COLOR="0;31"
[2026-01-29 01:40:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 01:40:54] HOME_URL="https://www.centos.org/"
[2026-01-29 01:40:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 01:40:54] 
[2026-01-29 01:40:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 01:40:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 01:40:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 01:40:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 01:40:54] 
[2026-01-29 01:40:54] 2026-01-29 01:40:06,303 | INFO     | **************************************
[2026-01-29 01:40:54] 2026-01-29 01:40:06,807 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/1
[2026-01-29 01:40:54] 2026-01-29 01:40:06,857 | INFO     | sufficient remaining disk space (209507581952 B)
[2026-01-29 01:40:54] 2026-01-29 01:40:06,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 01:40:54] 2026-01-29 01:40:06,859 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 01:40:54] 2026-01-29 01:40:06,859 | INFO     | update_server=False
[2026-01-29 01:40:54] 2026-01-29 01:40:06,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 01:40:54] 2026-01-29 01:40:06,974 | INFO     | all data control threads have been joined
[2026-01-29 01:40:54] 2026-01-29 01:40:07,174 | INFO     | all job control threads have been joined
[2026-01-29 01:40:54] 2026-01-29 01:40:07,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 01:40:54] 2026-01-29 01:40:07,551 | INFO     | aborting loop
[2026-01-29 01:40:54] 2026-01-29 01:40:07,864 | INFO     | [job] retrieve thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:07,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 01:40:54] 2026-01-29 01:40:07,982 | INFO     | [data] control thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:08,013 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:08,070 | INFO     | all payload control threads have been joined
[2026-01-29 01:40:54] 2026-01-29 01:40:08,179 | INFO     | [job] control thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:08,249 | INFO     | [job] validate thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:08,409 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 01:40:54] 2026-01-29 01:40:08,557 | INFO     | [job] job monitor thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:08,589 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:08,736 | INFO     | [payload] validate_post thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:09,075 | INFO     | [payload] control thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:09,124 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:09,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 01:40:54] 2026-01-29 01:40:09,311 | INFO     | [data] copytool_in thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:09,395 | INFO     | [payload] failed_post thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:09,414 | INFO     | [job] queue monitor thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:09,935 | INFO     | [data] copytool_out thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:13,228 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:17,675 | INFO     | job.realtimelogging is not enabled
[2026-01-29 01:40:54] 2026-01-29 01:40:18,680 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 01:40:54] 2026-01-29 01:40:37,549 | INFO     | PID=3771730 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 01:40:54] 2026-01-29 01:40:37,549 | INFO     | .. there are 20 such processes running
[2026-01-29 01:40:54] 2026-01-29 01:40:37,552 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 01:40:54] 2026-01-29 01:40:37,553 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 01:40:54] 2026-01-29 01:40:37,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 01:40:54] 2026-01-29 01:40:47,233 | INFO     | [monitor] cgroup control has ended
[2026-01-29 01:40:54] 2026-01-29 01:40:48,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129322092795712)>', '<ExcThread(monitor, started 129321247168256)>']
[2026-01-29 01:40:54] 2026-01-29 01:40:48,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 01:40:54] 2026-01-29 01:40:48,614 | INFO     | [monitor] control thread has ended
[2026-01-29 01:40:54] 2026-01-29 01:40:53,336 | INFO     | all workflow threads have been joined
[2026-01-29 01:40:54] 2026-01-29 01:40:53,336 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 01:40:54] 2026-01-29 01:40:53,337 | INFO     | traces error code: 0
[2026-01-29 01:40:54] 2026-01-29 01:40:53,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 01:40:54] 2026-01-29 01:40:53,953 [wrapper] ==== pilot stdout END ====
[2026-01-29 01:40:54] 2026-01-29 01:40:53,961 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 01:40:54] 2026-01-29 01:40:53,970 [wrapper] pilotpid: 3771730
[2026-01-29 01:40:54] 2026-01-29 01:40:53,981 [wrapper] Pilot exit status: 0
[2026-01-29 01:40:54] 2026-01-29 01:40:54,029 [wrapper] pandaids: 6983772384
[2026-01-29 01:40:54] 2026-01-29 01:40:54,231 [wrapper] cleanup supervisor_pilot 4043207 3771731
[2026-01-29 01:40:54] 2026-01-29 01:40:54,241 [wrapper] Test setup, not cleaning
[2026-01-29 01:40:54] 2026-01-29 01:40:54,250 [wrapper] apfmon messages muted
[2026-01-29 01:40:54] 2026-01-29 01:40:54,261 [wrapper] ==== wrapper stdout END ====
[2026-01-29 01:40:54] 2026-01-29 01:40:54,270 [wrapper] ==== wrapper stderr END ====
[2026-01-29 01:40:54]  *** Error codes and diagnostics ***
[2026-01-29 01:40:54]     "exeErrorCode": 0,
[2026-01-29 01:40:54]     "exeErrorDiag": "",
[2026-01-29 01:40:54]     "pilotErrorCode": 0,
[2026-01-29 01:40:54]     "pilotErrorDiag": "",
[2026-01-29 01:40:54]  *** Listing of results directory ***
[2026-01-29 01:40:54] total 666720
[2026-01-29 01:40:54] -rw-r--r-- 1 boinc boinc    584422 Jan 26 03:16 pilot3.tar.gz
[2026-01-29 01:40:54] -rw-r--r-- 1 boinc boinc      5111 Jan 26 03:17 queuedata.json
[2026-01-29 01:40:54] -rwx------ 1 boinc boinc     36322 Jan 26 03:17 runpilot2-wrapper.sh
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc       100 Jan 28 23:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 01:40:54] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 23:38 run_atlas
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc       105 Jan 28 23:38 job.xml
[2026-01-29 01:40:54] -rw-r--r-- 2 boinc boinc 494221727 Jan 28 23:38 EVNT.48317869._000033.pool.root.1
[2026-01-29 01:40:54] -rw-r--r-- 2 boinc boinc     15845 Jan 28 23:38 start_atlas.sh
[2026-01-29 01:40:54] drwxrwx--x 2 boinc boinc      4096 Jan 28 23:38 shared
[2026-01-29 01:40:54] -rw-r--r-- 2 boinc boinc    597750 Jan 28 23:38 input.tar.gz
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc      7050 Jan 28 23:38 init_data.xml
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc         0 Jan 28 23:38 boinc_setup_complete
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc         0 Jan 28 23:38 boinc_lockfile
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc      2514 Jan 28 23:38 pandaJob.out
[2026-01-29 01:40:54] -rw------- 1 boinc boinc   1005755 Jan 28 23:39 agis_schedconf.cvmfs.json
[2026-01-29 01:40:54] -rw------- 1 boinc boinc   1516246 Jan 28 23:39 agis_ddmendpoints.agis.ALL.json
[2026-01-29 01:40:54] -rw------- 1 boinc boinc       419 Jan 28 23:39 workernode_map.json
[2026-01-29 01:40:54] drwx------ 5 boinc boinc      4096 Jan 28 23:39 pilot3
[2026-01-29 01:40:54] -rw------- 1 boinc boinc 181661748 Jan 29 01:38 HITS.48317872._001639.pool.root.1
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc       530 Jan 29 01:39 boinc_task_state.xml
[2026-01-29 01:40:54] -rw------- 1 boinc boinc      1039 Jan 29 01:39 memory_monitor_summary.json
[2026-01-29 01:40:54] -rw------- 1 boinc boinc    439029 Jan 29 01:39 log.48317872._001639.job.log.tgz.1
[2026-01-29 01:40:54] -rw------- 1 boinc boinc      6276 Jan 29 01:40 heartbeat.json
[2026-01-29 01:40:54] -rw------- 1 boinc boinc        95 Jan 29 01:40 pilot_heartbeat.json
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc      8192 Jan 29 01:40 boinc_mmap_file
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc        27 Jan 29 01:40 wrapper_checkpoint.txt
[2026-01-29 01:40:54] -rw------- 1 boinc boinc      4916 Jan 29 01:40 pilotlog.txt
[2026-01-29 01:40:54] -rw------- 1 boinc boinc   1005151 Jan 29 01:40 log.48317872._001639.job.log.1
[2026-01-29 01:40:54] -rw------- 1 boinc boinc       357 Jan 29 01:40 output.list
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc       620 Jan 29 01:40 runtime_log
[2026-01-29 01:40:54] -rw------- 1 boinc boinc   1464320 Jan 29 01:40 result.tar.gz
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc      9166 Jan 29 01:40 runtime_log.err
[2026-01-29 01:40:54] -rw------- 1 boinc boinc       651 Jan 29 01:40 YaPKDmmHS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSs8KDmMOmtMo.diag
[2026-01-29 01:40:54] -rw-rw-r-- 1 boinc boinc     20792 Jan 29 01:40 stderr.txt
[2026-01-29 01:40:54] HITS file was successfully produced:
[2026-01-29 01:40:54] -rw------- 1 boinc boinc 181661748 Jan 29 01:38 shared/HITS.pool.root.1
[2026-01-29 01:40:54]  *** Contents of shared directory: ***
[2026-01-29 01:40:54] total 662088
[2026-01-29 01:40:54] -rw-r--r-- 2 boinc boinc 494221727 Jan 28 23:38 ATLAS.root_0
[2026-01-29 01:40:54] -rw-r--r-- 2 boinc boinc     15845 Jan 28 23:38 start_atlas.sh
[2026-01-29 01:40:54] -rw-r--r-- 2 boinc boinc    597750 Jan 28 23:38 input.tar.gz
[2026-01-29 01:40:54] -rw------- 1 boinc boinc 181661748 Jan 29 01:38 HITS.pool.root.1
[2026-01-29 01:40:54] -rw------- 1 boinc boinc   1464320 Jan 29 01:40 result.tar.gz
01:40:56 (3761232): run_atlas exited; CPU time 45922.842290
01:40:56 (3761232): called boinc_finish(0)

</stderr_txt>
]]>

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