Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:32:45 (1441731): wrapper (7.7.26015): starting
13:32:45 (1441731): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 13:32:45] Arguments: --nthreads 4
[2026-01-27 13:32:45] Threads: 4
[2026-01-27 13:32:45] Checking for CVMFS
[2026-01-27 13:32:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 13:32:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 13:32:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 13:32:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 13:32:45] 2.9.2.0 3097 7392 97164 155583 0 50 24763073 36864000 0 130560 0 4064427 99.988 264476 6206 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 13:32:45] CVMFS is ok
[2026-01-27 13:32:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 13:32:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 13:32:45] Further information can be found at the LHC@home message board.
[2026-01-27 13:32:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 13:32:45] Checking for apptainer binary...
[2026-01-27 13:32:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 13:32:45] Running /usr/bin/apptainer --version
[2026-01-27 13:32:45] apptainer version 1.4.1-1.1
[2026-01-27 13:32:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 13:32:45] thA338
[2026-01-27 13:32:45] apptainer works
[2026-01-27 13:32:45] Set ATHENA_PROC_NUMBER=4
[2026-01-27 13:32:45] Set ATHENA_CORE_NUMBER=4
[2026-01-27 13:32:45] Starting ATLAS job with PandaID=6983771713
[2026-01-27 13:32:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 14:52:18]  *** The last 200 lines of the pilot log: ***
[2026-01-27 14:52:18] 2026-01-27 13:51:47,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 14:52:18] 2026-01-27 13:51:47,434 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 14:52:18] 2026-01-27 13:51:47,434 | INFO     | job 6983771713 has completed (purged errors)
[2026-01-27 14:52:18] 2026-01-27 13:51:47,434 | INFO     | overall cleanup function is called
[2026-01-27 14:52:18] 2026-01-27 13:51:48,441 | INFO     | --- collectZombieJob: --- 10, [1450350]
[2026-01-27 14:52:18] 2026-01-27 13:51:48,441 | INFO     | zombie collector waiting for pid 1450350
[2026-01-27 14:52:18] 2026-01-27 13:51:48,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 14:52:18] 2026-01-27 13:51:48,441 | INFO     | collected zombie processes
[2026-01-27 14:52:18] 2026-01-27 13:51:48,441 | INFO     | will attempt to kill all subprocesses of pid=1450350
[2026-01-27 14:52:18] 2026-01-27 13:51:48,484 | INFO     | process IDs to be killed: [1450350] (in reverse order)
[2026-01-27 14:52:18] 2026-01-27 13:51:48,517 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 14:52:18] 2026-01-27 13:51:48,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 14:52:18] 2026-01-27 13:51:48,519 | INFO     | did not find any defunct processes belonging to 1450350
[2026-01-27 14:52:18] 2026-01-27 13:51:48,520 | INFO     | did not find any defunct processes belonging to 1450350
[2026-01-27 14:52:18] 2026-01-27 13:51:48,521 | INFO     | ready for new job
[2026-01-27 14:52:18] 2026-01-27 13:51:48,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 14:52:18] 2026-01-27 13:51:48,521 | INFO     | **************************************
[2026-01-27 14:52:18] 2026-01-27 13:51:48,521 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 14:52:18] 2026-01-27 13:51:48,521 | INFO     | **************************************
[2026-01-27 14:52:18] 2026-01-27 13:51:48,521 | INFO     | 
[2026-01-27 14:52:18] 2026-01-27 13:51:48,522 | INFO     | architecture information:
[2026-01-27 14:52:18] 2026-01-27 13:51:48,522 | INFO     | executing command: cat /etc/os-release
[2026-01-27 14:52:18] 2026-01-27 13:51:48,537 | INFO     | cat /etc/os-release:
[2026-01-27 14:52:18] NAME="CentOS Linux"
[2026-01-27 14:52:18] VERSION="7 (Core)"
[2026-01-27 14:52:18] ID="centos"
[2026-01-27 14:52:18] ID_LIKE="rhel fedora"
[2026-01-27 14:52:18] VERSION_ID="7"
[2026-01-27 14:52:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 14:52:18] ANSI_COLOR="0;31"
[2026-01-27 14:52:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 14:52:18] HOME_URL="https://www.centos.org/"
[2026-01-27 14:52:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 14:52:18] 
[2026-01-27 14:52:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 14:52:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 14:52:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 14:52:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 14:52:18] 
[2026-01-27 14:52:18] 2026-01-27 13:51:48,537 | INFO     | **************************************
[2026-01-27 14:52:18] 2026-01-27 13:51:49,040 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 14:52:18] 2026-01-27 13:51:49,057 | INFO     | sufficient remaining disk space (233500049408 B)
[2026-01-27 14:52:18] 2026-01-27 13:51:49,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 14:52:18] 2026-01-27 13:51:49,058 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 14:52:18] 2026-01-27 13:51:49,058 | INFO     | update_server=False
[2026-01-27 14:52:18] 2026-01-27 13:51:49,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 14:52:18] 2026-01-27 13:51:49,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 14:52:18] 2026-01-27 13:51:49,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 14:52:18] 2026-01-27 13:51:49,148 | INFO     | all job control threads have been joined
[2026-01-27 14:52:18] 2026-01-27 13:51:49,371 | INFO     | all data control threads have been joined
[2026-01-27 14:52:18] 2026-01-27 13:51:49,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 14:52:18] 2026-01-27 13:51:49,759 | INFO     | aborting loop
[2026-01-27 14:52:18] 2026-01-27 13:51:50,063 | INFO     | [job] retrieve thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,064 | INFO     | [job] queue monitor thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,121 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,154 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,154 | INFO     | [job] control thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 14:52:18] 2026-01-27 13:51:50,324 | INFO     | [data] copytool_in thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,325 | INFO     | all payload control threads have been joined
[2026-01-27 14:52:18] 2026-01-27 13:51:50,377 | INFO     | [data] control thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,568 | INFO     | [payload] validate_post thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,765 | INFO     | [job] job monitor thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:50,793 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:51,027 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:51,064 | INFO     | [data] copytool_out thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:51,331 | INFO     | [payload] control thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:51,496 | INFO     | [job] validate thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:51,631 | INFO     | [payload] failed_post thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:51:54,171 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 14:52:18] 2026-01-27 13:52:03,796 | INFO     | [monitor] cgroup control has ended
[2026-01-27 14:52:18] 2026-01-27 13:52:05,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135028283200)>', '<ExcThread(monitor, started 140134246774528)>']
[2026-01-27 14:52:18] 2026-01-27 13:52:10,281 | INFO     | all workflow threads have been joined
[2026-01-27 14:52:18] 2026-01-27 13:52:10,281 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 14:52:18] 2026-01-27 13:52:10,281 | INFO     | traces error code: 0
[2026-01-27 14:52:18] 2026-01-27 13:52:10,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 14:52:18] 2026-01-27 13:52:18,785 | INFO     | PID=1445843 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 14:52:18] 2026-01-27 13:52:18,786 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 14:52:18] 2026-01-27 13:52:18,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 14:52:18] 2026-01-27 13:52:18,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 14:52:18] 2026-01-27 13:52:18,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 14:52:18] 2026-01-27 13:52:18,786 | INFO     | [monitor] control thread has ended
[2026-01-27 14:52:18] 2026-01-27 13:52:18,862 [wrapper] ==== pilot stdout END ====
[2026-01-27 14:52:18] 2026-01-27 13:52:18,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 14:52:18] 2026-01-27 13:52:18,870 [wrapper] pilotpid: 1445843
[2026-01-27 14:52:18] 2026-01-27 13:52:18,874 [wrapper] Pilot exit status: 0
[2026-01-27 14:52:18] 2026-01-27 13:52:18,886 [wrapper] pandaids: 6983771713
[2026-01-27 14:52:18] 2026-01-27 13:52:18,907 [wrapper] cleanup supervisor_pilot 1455638 1445844
[2026-01-27 14:52:18] 2026-01-27 13:52:18,911 [wrapper] Test setup, not cleaning
[2026-01-27 14:52:18] 2026-01-27 13:52:18,914 [wrapper] apfmon messages muted
[2026-01-27 14:52:18] 2026-01-27 13:52:18,918 [wrapper] ==== wrapper stdout END ====
[2026-01-27 14:52:18] 2026-01-27 13:52:18,922 [wrapper] ==== wrapper stderr END ====
[2026-01-27 14:52:18]  *** Error codes and diagnostics ***
[2026-01-27 14:52:18]     "exeErrorCode": 0,
[2026-01-27 14:52:18]     "exeErrorDiag": "",
[2026-01-27 14:52:18]     "pilotErrorCode": 0,
[2026-01-27 14:52:18]     "pilotErrorDiag": "",
[2026-01-27 14:52:18]  *** Listing of results directory ***
[2026-01-27 14:52:18] total 668596
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 14:52:18] -rwx------ 1 boinc boinc     36322 Jan 26 04:19 runpilot2-wrapper.sh
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:21 queuedata.json
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc       100 Jan 27 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 14:52:18] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 13:32 run_atlas
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc       105 Jan 27 13:32 job.xml
[2026-01-27 14:52:18] -rw-r--r-- 2 boinc boinc 494789514 Jan 27 13:32 EVNT.48318040._000031.pool.root.1
[2026-01-27 14:52:18] -rw-r--r-- 2 boinc boinc    597763 Jan 27 13:32 input.tar.gz
[2026-01-27 14:52:18] -rw-r--r-- 2 boinc boinc     15845 Jan 27 13:32 start_atlas.sh
[2026-01-27 14:52:18] drwxrwx--x 2 boinc boinc      4096 Jan 27 13:32 shared
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc         0 Jan 27 13:32 boinc_setup_complete
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc      6376 Jan 27 13:32 init_data.xml
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc         0 Jan 27 13:32 boinc_lockfile
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc      2532 Jan 27 13:32 pandaJob.out
[2026-01-27 14:52:18] -rw------- 1 boinc boinc   1002853 Jan 27 13:32 agis_schedconf.cvmfs.json
[2026-01-27 14:52:18] -rw------- 1 boinc boinc   1516246 Jan 27 13:32 agis_ddmendpoints.agis.ALL.json
[2026-01-27 14:52:18] -rw------- 1 boinc boinc       427 Jan 27 13:32 workernode_map.json
[2026-01-27 14:52:18] drwx------ 5 boinc boinc      4096 Jan 27 13:32 pilot3
[2026-01-27 14:52:18] -rw------- 1 boinc boinc 183997008 Jan 27 14:51 HITS.48318042._001535.pool.root.1
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc       530 Jan 27 14:51 boinc_task_state.xml
[2026-01-27 14:52:18] -rw------- 1 boinc boinc      1019 Jan 27 14:51 memory_monitor_summary.json
[2026-01-27 14:52:18] -rw------- 1 boinc boinc    270397 Jan 27 14:51 log.48318042._001535.job.log.tgz.1
[2026-01-27 14:52:18] -rw------- 1 boinc boinc      6307 Jan 27 14:51 heartbeat.json
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc      8192 Jan 27 14:51 boinc_mmap_file
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc        27 Jan 27 14:51 wrapper_checkpoint.txt
[2026-01-27 14:52:18] -rw------- 1 boinc boinc       747 Jan 27 14:52 pilotlog.txt
[2026-01-27 14:52:18] -rw------- 1 boinc boinc        95 Jan 27 14:52 pilot_heartbeat.json
[2026-01-27 14:52:18] -rw------- 1 boinc boinc    696089 Jan 27 14:52 log.48318042._001535.job.log.1
[2026-01-27 14:52:18] -rw------- 1 boinc boinc       357 Jan 27 14:52 output.list
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc       620 Jan 27 14:52 runtime_log
[2026-01-27 14:52:18] -rw------- 1 boinc boinc    983040 Jan 27 14:52 result.tar.gz
[2026-01-27 14:52:18] -rw------- 1 boinc boinc       657 Jan 27 14:52 7p8MDmrJS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKR2KDm0Faigm.diag
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc      8896 Jan 27 14:52 runtime_log.err
[2026-01-27 14:52:18] -rw-r--r-- 1 boinc boinc     11009 Jan 27 14:52 stderr.txt
[2026-01-27 14:52:18] HITS file was successfully produced:
[2026-01-27 14:52:18] -rw------- 1 boinc boinc 183997008 Jan 27 14:51 shared/HITS.pool.root.1
[2026-01-27 14:52:18]  *** Contents of shared directory: ***
[2026-01-27 14:52:18] total 664452
[2026-01-27 14:52:18] -rw-r--r-- 2 boinc boinc 494789514 Jan 27 13:32 ATLAS.root_0
[2026-01-27 14:52:18] -rw-r--r-- 2 boinc boinc    597763 Jan 27 13:32 input.tar.gz
[2026-01-27 14:52:18] -rw-r--r-- 2 boinc boinc     15845 Jan 27 13:32 start_atlas.sh
[2026-01-27 14:52:18] -rw------- 1 boinc boinc 183997008 Jan 27 14:51 HITS.pool.root.1
[2026-01-27 14:52:18] -rw------- 1 boinc boinc    983040 Jan 27 14:52 result.tar.gz
14:52:20 (1441731): run_atlas exited; CPU time 17840.957984
14:52:20 (1441731): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN