Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:15:41 (385893): wrapper (7.7.26015): starting
04:15:41 (385893): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 04:15:41] Arguments: --nthreads 12
[2026-01-27 04:15:41] Threads: 12
[2026-01-27 04:15:41] Checking for CVMFS
[2026-01-27 04:15:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:15:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:15:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:15:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:15:44] 2.13.3.0 6794 376 48812 155580 0 50 5444069 6144000 3668 130560 0 1226712 99.997 15019 387 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-27 04:15:44] CVMFS is ok
[2026-01-27 04:15:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:15:44] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-27 04:15:44] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-27 04:15:44] Further information can be found at the LHC@home message board.
[2026-01-27 04:15:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:15:44] Checking for apptainer binary...
[2026-01-27 04:15:44] apptainer is not installed, using version from CVMFS
[2026-01-27 04:15:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:15:46] XeonFire
[2026-01-27 04:15:46] apptainer works
[2026-01-27 04:15:46] Set ATHENA_PROC_NUMBER=12
[2026-01-27 04:15:46] Set ATHENA_CORE_NUMBER=12
[2026-01-27 04:15:46] Starting ATLAS job with PandaID=6983774004
[2026-01-27 04:15:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 05:27:50]  *** The last 200 lines of the pilot log: ***
[2026-01-27 05:27:50]  status_code=0
[2026-01-27 05:27:50]  storage_token=
[2026-01-27 05:27:50]  surl=/var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/log.48318042._002331.job.log.tgz.1
[2026-01-27 05:27:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/b9/log.48318042._002331.job.log.tgz.1
[2026-01-27 05:27:50]  workdir=None
[2026-01-27 05:27:50] ]
[2026-01-27 05:27:50] 2026-01-27 11:27:15,326 | INFO     | transferring file log.48318042._002331.job.log.tgz.1 from /var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/log.48318042._002331.job.log.tgz.1 to /var/lib/boinc
[2026-01-27 05:27:50] 2026-01-27 11:27:15,326 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/log.48318042._002331.job.log.tgz.1 /var/lib/boinc-client/slots/6/log.483180
[2026-01-27 05:27:50] 2026-01-27 11:27:15,341 | INFO     | adding to output.list: log.48318042._002331.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/b9/log.48318042._002331.job.log.tg
[2026-01-27 05:27:50] 2026-01-27 11:27:15,342 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 05:27:50] 2026-01-27 11:27:15,342 | INFO     | summary of transferred files:
[2026-01-27 05:27:50] 2026-01-27 11:27:15,342 | INFO     |  -- lfn=log.48318042._002331.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 05:27:50] 2026-01-27 11:27:15,342 | INFO     | stage-out finished correctly
[2026-01-27 05:27:50] 2026-01-27 11:27:15,880 | INFO     | PID=390338 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 05:27:50] 2026-01-27 11:27:15,880 | INFO     | .. there are 5 such processes running
[2026-01-27 05:27:50] 2026-01-27 11:27:16,881 | INFO     | time since job start (4243s) is within the limit (349056.0s)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,615 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 05:27:50] 2026-01-27 11:27:17,875 | INFO     | job 6983774004 has state=finished
[2026-01-27 05:27:50] 2026-01-27 11:27:17,876 | INFO     | preparing for final server update for job 6983774004 in state='finished'
[2026-01-27 05:27:50] 2026-01-27 11:27:17,876 | INFO     | reading metadata from: /var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/jobReport.json
[2026-01-27 05:27:50] 2026-01-27 11:27:17,878 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/6/workernode_map.json
[2026-01-27 05:27:50] 2026-01-27 11:27:17,878 | INFO     | this job has now completed (state=finished)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,878 | INFO     | log transfer has been attempted: DONE
[2026-01-27 05:27:50] 2026-01-27 11:27:17,878 | INFO     | job 6983774004 has finished - writing final server update
[2026-01-27 05:27:50] 2026-01-27 11:27:17,879 | INFO     | total number of processed events: 400 (read)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,890 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,891 | INFO     | extracted standard info from prmon json
[2026-01-27 05:27:50] 2026-01-27 11:27:17,891 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 05:27:50] 2026-01-27 11:27:17,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 05:27:50] 2026-01-27 11:27:17,892 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 05:27:50] 2026-01-27 11:27:17,892 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 05:27:50] 2026-01-27 11:27:17,894 | INFO     | fitting pss+swap vs Time
[2026-01-27 05:27:50] 2026-01-27 11:27:17,894 | INFO     | sum of square deviations: 77515872.0
[2026-01-27 05:27:50] 2026-01-27 11:27:17,894 | INFO     | sum of deviations: -8035425080.0
[2026-01-27 05:27:50] 2026-01-27 11:27:17,895 | INFO     | mean x: 1769511213.0
[2026-01-27 05:27:50] 2026-01-27 11:27:17,895 | INFO     | mean y: 2948830.9523809524
[2026-01-27 05:27:50] 2026-01-27 11:27:17,895 | INFO     | intersect: 183433443946.6033
[2026-01-27 05:27:50] 2026-01-27 11:27:17,896 | INFO     | chi2: 0.10171113000974803
[2026-01-27 05:27:50] 2026-01-27 11:27:17,896 | INFO     | current memory leak: -103.66 B/s (using 63 data points, chi2=0.10)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,897 | INFO     | could have reported an average CPU frequency of 2549 MHz (6 samples)
[2026-01-27 05:27:50] 2026-01-27 11:27:17,897 | INFO     | ..............................
[2026-01-27 05:27:50] 2026-01-27 11:27:17,897 | INFO     | . Timing measurements:
[2026-01-27 05:27:50] 2026-01-27 11:27:17,897 | INFO     | . get job = 0 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,898 | INFO     | . initial setup = 9 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,898 | INFO     | . payload setup = 7 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,898 | INFO     | . stage-in = 0 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,898 | INFO     | . payload execution = 4219 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,898 | INFO     | . stage-out = 0 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,899 | INFO     | . log creation = 0 s
[2026-01-27 05:27:50] 2026-01-27 11:27:17,899 | INFO     | ..............................
[2026-01-27 05:27:50] 2026-01-27 11:27:18,134 | INFO     | 
[2026-01-27 05:27:50] 2026-01-27 11:27:18,134 | INFO     | job summary report
[2026-01-27 05:27:50] 2026-01-27 11:27:18,134 | INFO     | --------------------------------------------------
[2026-01-27 05:27:50] 2026-01-27 11:27:18,134 | INFO     | PanDA job id: 6983774004
[2026-01-27 05:27:50] 2026-01-27 11:27:18,134 | INFO     | task id: 48318042
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | errors: (none)
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | pilot state: finished 
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | transexitcode: 0
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | exeerrorcode: 0
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | exeerrordiag: 
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | exitcode: 0
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | exitmsg: OK
[2026-01-27 05:27:50] 2026-01-27 11:27:18,135 | INFO     | cpuconsumptiontime: 45359 s
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | nevents: 400
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | neventsw: 0
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | pid: 395140
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | pgrp: 395140
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | corecount: 12
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | event service: False
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | sizes: {0: 2283160, 1: 2284285, 12: 2284285, 4230: 2319037, 4233: 2319231}
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | --------------------------------------------------
[2026-01-27 05:27:50] 2026-01-27 11:27:18,136 | INFO     | 
[2026-01-27 05:27:50] 2026-01-27 11:27:18,137 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2026-01-27 05:27:50] 2026-01-27 11:27:18,167 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,167 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,167 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,167 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,167 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,168 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | job 6983774004 has completed (purged errors)
[2026-01-27 05:27:50] 2026-01-27 11:27:18,169 | INFO     | overall cleanup function is called
[2026-01-27 05:27:50] 2026-01-27 11:27:19,043 | WARNING  | process 395140 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 05:27:50] 2026-01-27 11:27:19,178 | INFO     | --- collectZombieJob: --- 10, [395140]
[2026-01-27 05:27:50] 2026-01-27 11:27:19,178 | INFO     | zombie collector waiting for pid 395140
[2026-01-27 05:27:50] 2026-01-27 11:27:19,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 05:27:50] 2026-01-27 11:27:19,179 | INFO     | collected zombie processes
[2026-01-27 05:27:50] 2026-01-27 11:27:19,179 | INFO     | will attempt to kill all subprocesses of pid=395140
[2026-01-27 05:27:50] 2026-01-27 11:27:19,515 | INFO     | using path: /var/lib/boinc-client/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 05:27:50] 2026-01-27 11:27:19,516 | INFO     | using path: /var/lib/boinc-client/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 05:27:50] 2026-01-27 11:27:19,517 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 05:27:50] 2026-01-27 11:27:19,517 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 05:27:50] 2026-01-27 11:27:19,517 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/payload.stdout) since it has not been created yet
[2026-01-27 05:27:50] 2026-01-27 11:27:19,517 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2026-01-27 05:27:50] 2026-01-27 11:27:19,532 | INFO     | sufficient remaining disk space (1781464563712 B)
[2026-01-27 05:27:50] 2026-01-27 11:27:19,532 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 05:27:50] 2026-01-27 11:27:19,532 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/6/PanDA_Pilot-6983774004/HITS.48318042._002331.pool.root.1 since it does not exist
[2026-01-27 05:27:50] 2026-01-27 11:27:19,950 | INFO     | process IDs to be killed: [395140] (in reverse order)
[2026-01-27 05:27:50] 2026-01-27 11:27:20,082 | INFO     | number of running child processes to parent process 395140: 1
[2026-01-27 05:27:50] 2026-01-27 11:27:20,082 | INFO     | maximum number of monitored processes: 6
[2026-01-27 05:27:50] 2026-01-27 11:27:20,082 | INFO     | aborting job monitoring since job object (job id=6983774004) has expired
[2026-01-27 05:27:50] 2026-01-27 11:27:20,089 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 05:27:50] 2026-01-27 11:27:20,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 05:27:50] 2026-01-27 11:27:20,095 | INFO     | did not find any defunct processes belonging to 395140
[2026-01-27 05:27:50] 2026-01-27 11:27:20,102 | INFO     | did not find any defunct processes belonging to 395140
[2026-01-27 05:27:50] 2026-01-27 11:27:20,102 | INFO     | ready for new job
[2026-01-27 05:27:50] 2026-01-27 11:27:20,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 05:27:50] 2026-01-27 11:27:20,105 | INFO     | **************************************
[2026-01-27 05:27:50] 2026-01-27 11:27:20,105 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 05:27:50] 2026-01-27 11:27:20,105 | INFO     | **************************************
[2026-01-27 05:27:50] 2026-01-27 11:27:20,105 | INFO     | 
[2026-01-27 05:27:50] 2026-01-27 11:27:20,112 | INFO     | architecture information:
[2026-01-27 05:27:50] 2026-01-27 11:27:20,113 | INFO     | executing command: cat /etc/os-release
[2026-01-27 05:27:50] 2026-01-27 11:27:20,126 | INFO     | cat /etc/os-release:
[2026-01-27 05:27:50] NAME="CentOS Linux"
[2026-01-27 05:27:50] VERSION="7 (Core)"
[2026-01-27 05:27:50] ID="centos"
[2026-01-27 05:27:50] ID_LIKE="rhel fedora"
[2026-01-27 05:27:50] VERSION_ID="7"
[2026-01-27 05:27:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 05:27:50] ANSI_COLOR="0;31"
[2026-01-27 05:27:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 05:27:50] HOME_URL="https://www.centos.org/"
[2026-01-27 05:27:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 05:27:50] 
[2026-01-27 05:27:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 05:27:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 05:27:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 05:27:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 05:27:50] 
[2026-01-27 05:27:50] 2026-01-27 11:27:20,126 | INFO     | **************************************
[2026-01-27 05:27:50] 2026-01-27 11:27:20,628 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | INFO     | sufficient remaining disk space (1781465612288 B)
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | INFO     | update_server=False
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:27:50] 2026-01-27 11:27:20,644 | INFO     | will abort loop
[2026-01-27 05:27:50] 2026-01-27 11:27:20,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 05:27:50] 2026-01-27 11:27:20,981 | INFO     | all payload control threads have been joined
[2026-01-27 05:27:50] 2026-01-27 11:27:21,056 | INFO     | job.realtimelogging is not enabled
[2026-01-27 05:27:50] 2026-01-27 11:27:21,107 | INFO     | all data control threads have been joined
[2026-01-27 05:27:50] 2026-01-27 11:27:21,446 | INFO     | all job control threads have been joined
[2026-01-27 05:27:50] 2026-01-27 11:27:21,649 | INFO     | [job] retrieve thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:21,650 | INFO     | [job] job monitor thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:21,986 | INFO     | [payload] control thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,058 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,060 | INFO     | [payload] validate_post thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,112 | INFO     | [data] control thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,235 | INFO     | [job] validate thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,407 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,450 | INFO     | [job] control thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,606 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,832 | INFO     | [payload] failed_post thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,923 | INFO     | [data] copytool_out thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,936 | INFO     | [data] copytool_in thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:22,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:27:50] 2026-01-27 11:27:23,062 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:23,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 05:27:50] 2026-01-27 11:27:24,005 | INFO     | [job] queue monitor thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:27,699 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 05:27:50] 2026-01-27 11:27:39,509 | INFO     | [monitor] cgroup control has ended
[2026-01-27 05:27:50] 2026-01-27 11:27:40,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134433598256960)>', '<ExcThread(monitor, started 134433046771456)>']
[2026-01-27 05:27:50] 2026-01-27 11:27:45,912 | INFO     | all workflow threads have been joined
[2026-01-27 05:27:50] 2026-01-27 11:27:45,912 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 05:27:50] 2026-01-27 11:27:45,913 | INFO     | traces error code: 0
[2026-01-27 05:27:50] 2026-01-27 11:27:45,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 05:27:50] 2026-01-27 11:27:50,486 | INFO     | PID=390338 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 05:27:50] 2026-01-27 11:27:50,486 | INFO     | .. there are 5 such processes running
[2026-01-27 05:27:50] 2026-01-27 11:27:50,486 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 05:27:50] 2026-01-27 11:27:50,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 05:27:50] 2026-01-27 11:27:50,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 05:27:50] 2026-01-27 11:27:50,487 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 05:27:50] 2026-01-27 11:27:50,487 | INFO     | [monitor] control thread has ended
[2026-01-27 05:27:50] 2026-01-27 11:27:50,584 [wrapper] ==== pilot stdout END ====
[2026-01-27 05:27:50] 2026-01-27 11:27:50,587 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 05:27:50] 2026-01-27 11:27:50,590 [wrapper] pilotpid: 390338
[2026-01-27 05:27:50] 2026-01-27 11:27:50,593 [wrapper] Pilot exit status: 0
[2026-01-27 05:27:50] 2026-01-27 11:27:50,603 [wrapper] pandaids: 6983774004
[2026-01-27 05:27:50] 2026-01-27 11:27:50,682 [wrapper] cleanup supervisor_pilot  414959 390339
[2026-01-27 05:27:50] 2026-01-27 11:27:50,685 [wrapper] Test setup, not cleaning
[2026-01-27 05:27:50] 2026-01-27 11:27:50,689 [wrapper] apfmon messages muted
[2026-01-27 05:27:50] 2026-01-27 11:27:50,692 [wrapper] ==== wrapper stdout END ====
[2026-01-27 05:27:50] 2026-01-27 11:27:50,694 [wrapper] ==== wrapper stderr END ====
[2026-01-27 05:27:50]  *** Error codes and diagnostics ***
[2026-01-27 05:27:50]     "exeErrorCode": 0,
[2026-01-27 05:27:50]     "exeErrorDiag": "",
[2026-01-27 05:27:50]     "pilotErrorCode": 0,
[2026-01-27 05:27:50]     "pilotErrorDiag": "",
[2026-01-27 05:27:50]  *** Listing of results directory ***
[2026-01-27 05:27:50] total 674840
[2026-01-27 05:27:50] -rw-r--r-- 1 mark mark    584422 Jan 25 23:14 pilot3.tar.gz
[2026-01-27 05:27:50] -rwx------ 1 mark mark     36322 Jan 25 23:17 runpilot2-wrapper.sh
[2026-01-27 05:27:50] -rw-r--r-- 1 mark mark      5111 Jan 25 23:22 queuedata.json
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark       100 Jan 27 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 05:27:50] -rwxr-xr-x 1 mark mark      7986 Jan 27 04:15 run_atlas
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark       105 Jan 27 04:15 job.xml
[2026-01-27 05:27:50] -rw-r--r-- 2 mark mark 501725886 Jan 27 04:15 EVNT.48318040._000047.pool.root.1
[2026-01-27 05:27:50] -rw-r--r-- 2 mark mark     15845 Jan 27 04:15 start_atlas.sh
[2026-01-27 05:27:50] drwxrwx--x 2 mark mark      4096 Jan 27 04:15 shared
[2026-01-27 05:27:50] -rw-r--r-- 2 mark mark    597769 Jan 27 04:15 input.tar.gz
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark      9265 Jan 27 04:15 init_data.xml
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark         0 Jan 27 04:15 boinc_setup_complete
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark         0 Jan 27 04:15 boinc_lockfile
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark      2533 Jan 27 04:15 pandaJob.out
[2026-01-27 05:27:50] -rw------- 1 mark mark   1002845 Jan 27 04:16 agis_schedconf.cvmfs.json
[2026-01-27 05:27:50] -rw------- 1 mark mark   1516246 Jan 27 04:16 agis_ddmendpoints.agis.ALL.json
[2026-01-27 05:27:50] -rw------- 1 mark mark       431 Jan 27 04:16 workernode_map.json
[2026-01-27 05:27:50] drwx------ 5 mark mark      4096 Jan 27 04:16 pilot3
[2026-01-27 05:27:50] -rw------- 1 mark mark 183343912 Jan 27 05:26 HITS.48318042._002331.pool.root.1
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark       530 Jan 27 05:26 boinc_task_state.xml
[2026-01-27 05:27:50] -rw------- 1 mark mark        95 Jan 27 05:27 pilot_heartbeat.json
[2026-01-27 05:27:50] -rw------- 1 mark mark      1032 Jan 27 05:27 memory_monitor_summary.json
[2026-01-27 05:27:50] -rw------- 1 mark mark    384130 Jan 27 05:27 log.48318042._002331.job.log.tgz.1
[2026-01-27 05:27:50] -rw------- 1 mark mark      6341 Jan 27 05:27 heartbeat.json
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark      8192 Jan 27 05:27 boinc_mmap_file
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark        27 Jan 27 05:27 wrapper_checkpoint.txt
[2026-01-27 05:27:50] -rw------- 1 mark mark       821 Jan 27 05:27 pilotlog.txt
[2026-01-27 05:27:50] -rw------- 1 mark mark    627668 Jan 27 05:27 log.48318042._002331.job.log.1
[2026-01-27 05:27:50] -rw------- 1 mark mark       357 Jan 27 05:27 output.list
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark       620 Jan 27 05:27 runtime_log
[2026-01-27 05:27:50] -rw------- 1 mark mark   1034240 Jan 27 05:27 result.tar.gz
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark      8886 Jan 27 05:27 runtime_log.err
[2026-01-27 05:27:50] -rw------- 1 mark mark       645 Jan 27 05:27 NZoNDmGAU48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2G9KDmwQqdem.diag
[2026-01-27 05:27:50] -rw-rw-r-- 1 mark mark     22457 Jan 27 05:27 stderr.txt
[2026-01-27 05:27:50] HITS file was successfully produced:
[2026-01-27 05:27:50] -rw------- 1 mark mark 183343912 Jan 27 05:26 shared/HITS.pool.root.1
[2026-01-27 05:27:50]  *** Contents of shared directory: ***
[2026-01-27 05:27:50] total 670636
[2026-01-27 05:27:50] -rw-r--r-- 2 mark mark 501725886 Jan 27 04:15 ATLAS.root_0
[2026-01-27 05:27:50] -rw-r--r-- 2 mark mark     15845 Jan 27 04:15 start_atlas.sh
[2026-01-27 05:27:50] -rw-r--r-- 2 mark mark    597769 Jan 27 04:15 input.tar.gz
[2026-01-27 05:27:50] -rw------- 1 mark mark 183343912 Jan 27 05:26 HITS.pool.root.1
[2026-01-27 05:27:50] -rw------- 1 mark mark   1034240 Jan 27 05:27 result.tar.gz
05:27:52 (385893): run_atlas exited; CPU time 45545.436755
05:27:52 (385893): called boinc_finish(0)

</stderr_txt>
]]>

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