Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:55:27 (918695): wrapper (7.7.26015): starting
08:55:27 (918695): wrapper: running run_atlas (--nthreads 4)
[2026-02-01 08:55:27] Arguments: --nthreads 4
[2026-02-01 08:55:27] Threads: 4
[2026-02-01 08:55:27] Checking for CVMFS
[2026-02-01 08:55:27] No cvmfs_config command found, will try listing directly
[2026-02-01 08:55:27] CVMFS is ok
[2026-02-01 08:55:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 08:55:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 08:55:27] Further information can be found at the LHC@home message board.
[2026-02-01 08:55:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 08:55:27] Checking for apptainer binary...
[2026-02-01 08:55:27] which: no apptainer in ((null))
[2026-02-01 08:55:27] apptainer is not installed, using version from CVMFS
[2026-02-01 08:55:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 08:55:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-02-01 08:55:27] apptainer works
[2026-02-01 08:55:28] Set ATHENA_PROC_NUMBER=4
[2026-02-01 08:55:28] Set ATHENA_CORE_NUMBER=4
[2026-02-01 08:55:28] Starting ATLAS job with PandaID=6984062742
[2026-02-01 08:55:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 12:02:39]  *** The last 200 lines of the pilot log: ***
[2026-02-01 12:02:39] 2026-02-01 10:49:19,325 | INFO     | extracted standard info from prmon json
[2026-02-01 12:02:39] 2026-02-01 10:49:19,325 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 12:02:39] 2026-02-01 10:49:19,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 12:02:39] 2026-02-01 10:49:19,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 12:02:39] 2026-02-01 10:49:19,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 12:02:39] 2026-02-01 10:49:19,329 | INFO     | fitting pss+swap vs Time
[2026-02-01 12:02:39] 2026-02-01 10:49:19,329 | INFO     | sum of square deviations: 1550429070.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,330 | INFO     | sum of deviations: 1686099353.000002
[2026-02-01 12:02:39] 2026-02-01 10:49:19,330 | INFO     | mean x: 1769937765.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,330 | INFO     | mean y: 2303032.5321637425
[2026-02-01 12:02:39] 2026-02-01 10:49:19,331 | INFO     | intersect: -1922513122.015796
[2026-02-01 12:02:39] 2026-02-01 10:49:19,331 | INFO     | chi2: 2.113965655382768
[2026-02-01 12:02:39] 2026-02-01 10:49:19,331 | INFO     | sum of square deviations: 1418361477.5
[2026-02-01 12:02:39] 2026-02-01 10:49:19,332 | INFO     | sum of deviations: 12112651385.500015
[2026-02-01 12:02:39] 2026-02-01 10:49:19,332 | INFO     | mean x: 1769937612.5
[2026-02-01 12:02:39] 2026-02-01 10:49:19,333 | INFO     | mean y: 2314782.246987952
[2026-02-01 12:02:39] 2026-02-01 10:49:19,333 | INFO     | intersect: -15112758218.808
[2026-02-01 12:02:39] 2026-02-01 10:49:19,333 | INFO     | chi2: 1.3239636851709518
[2026-02-01 12:02:39] 2026-02-01 10:49:19,333 | INFO     | current chi2=1.3239636851709518 (change=37.37061518479464 %)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,333 | INFO     | sum of square deviations: 1294014960.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,334 | INFO     | sum of deviations: 11767178892.000002
[2026-02-01 12:02:39] 2026-02-01 10:49:19,335 | INFO     | mean x: 1769937460.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,335 | INFO     | mean y: 2314358.4285714286
[2026-02-01 12:02:39] 2026-02-01 10:49:19,335 | INFO     | intersect: -16092685593.868809
[2026-02-01 12:02:39] 2026-02-01 10:49:19,335 | INFO     | chi2: 1.3251432838309538
[2026-02-01 12:02:39] 2026-02-01 10:49:19,335 | INFO     | current chi2=1.3251432838309538 (change=-0.0890959981164246 %)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,335 | INFO     | right removable region: 160
[2026-02-01 12:02:39] 2026-02-01 10:49:19,336 | INFO     | sum of square deviations: 1418361477.5
[2026-02-01 12:02:39] 2026-02-01 10:49:19,337 | INFO     | sum of deviations: -17856301585.5
[2026-02-01 12:02:39] 2026-02-01 10:49:19,337 | INFO     | mean x: 1769937917.5
[2026-02-01 12:02:39] 2026-02-01 10:49:19,337 | INFO     | mean y: 2325204.4759036144
[2026-02-01 12:02:39] 2026-02-01 10:49:19,337 | INFO     | intersect: 22284758662.97472
[2026-02-01 12:02:39] 2026-02-01 10:49:19,337 | INFO     | chi2: 0.85055694326841
[2026-02-01 12:02:39] 2026-02-01 10:49:19,337 | INFO     | current chi2=0.85055694326841 (change=59.76486462291163 %)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,338 | INFO     | sum of square deviations: 1294014960.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | sum of deviations: -14769810562.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | mean x: 1769938070.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | mean y: 2321394.1739130435
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | intersect: 20204290311.420353
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | chi2: 0.8414003309816303
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | current chi2=0.8414003309816303 (change=1.0765431238023795 %)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,339 | INFO     | left removable region: 20
[2026-02-01 12:02:39] 2026-02-01 10:49:19,340 | INFO     | sum of square deviations: 850825255.0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,340 | INFO     | sum of deviations: 607692675.0000002
[2026-02-01 12:02:39] 2026-02-01 10:49:19,341 | INFO     | mean x: 1769938039.5
[2026-02-01 12:02:39] 2026-02-01 10:49:19,341 | INFO     | mean y: 2327193.342857143
[2026-02-01 12:02:39] 2026-02-01 10:49:19,341 | INFO     | intersect: -1261831781.1201317
[2026-02-01 12:02:39] 2026-02-01 10:49:19,341 | INFO     | chi2: 0.00018484289860471904
[2026-02-01 12:02:39] 2026-02-01 10:49:19,341 | INFO     | current memory leak: 0.71 B/s (using 140 data points, chi2=0.00)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | could have reported an average CPU frequency of 2712 MHz (9 samples)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | ..............................
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . Timing measurements:
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . get job = 0 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . initial setup = 8 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . payload setup = 9 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . stage-in = 0 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . payload execution = 10379 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,342 | INFO     | . stage-out = 0 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,343 | INFO     | . log creation = 0 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,343 | INFO     | ..............................
[2026-02-01 12:02:39] 2026-02-01 10:49:19,438 | INFO     | 
[2026-02-01 12:02:39] 2026-02-01 10:49:19,439 | INFO     | job summary report
[2026-02-01 12:02:39] 2026-02-01 10:49:19,439 | INFO     | --------------------------------------------------
[2026-02-01 12:02:39] 2026-02-01 10:49:19,439 | INFO     | PanDA job id: 6984062742
[2026-02-01 12:02:39] 2026-02-01 10:49:19,439 | INFO     | task id: 48317872
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | errors: (none)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | pilot state: finished 
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | transexitcode: 0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | exeerrorcode: 0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | exeerrordiag: 
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | exitcode: 0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | exitmsg: OK
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | cpuconsumptiontime: 40010 s
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | nevents: 400
[2026-02-01 12:02:39] 2026-02-01 10:49:19,440 | INFO     | neventsw: 0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | pid: 928108
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | pgrp: 928108
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | corecount: 4
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | event service: False
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | sizes: {0: 2277843, 1: 2278304, 11: 2278304, 10393: 2307515, 10394: 2316535, 10396: 2316591, 10397: 2316977}
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | --------------------------------------------------
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | 
[2026-02-01 12:02:39] 2026-02-01 10:49:19,441 | INFO     | executing command: ls -lF /scratch/boinc/var/slot84/slots/0
[2026-02-01 12:02:39] 2026-02-01 10:49:19,479 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,479 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,479 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,479 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | job 6984062742 has completed (purged errors)
[2026-02-01 12:02:39] 2026-02-01 10:49:19,481 | INFO     | overall cleanup function is called
[2026-02-01 12:02:39] 2026-02-01 10:49:20,491 | INFO     | --- collectZombieJob: --- 10, [928108]
[2026-02-01 12:02:39] 2026-02-01 10:49:20,492 | INFO     | zombie collector waiting for pid 928108
[2026-02-01 12:02:39] 2026-02-01 10:49:20,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 12:02:39] 2026-02-01 10:49:20,492 | INFO     | collected zombie processes
[2026-02-01 12:02:39] 2026-02-01 10:49:20,492 | INFO     | will attempt to kill all subprocesses of pid=928108
[2026-02-01 12:02:39] 2026-02-01 10:49:22,120 | INFO     | process IDs to be killed: [928108] (in reverse order)
[2026-02-01 12:02:39] 2026-02-01 10:49:22,407 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 12:02:39] 2026-02-01 10:49:22,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 12:02:39] 2026-02-01 10:49:22,533 | INFO     | did not find any defunct processes belonging to 928108
[2026-02-01 12:02:39] 2026-02-01 10:49:22,659 | INFO     | did not find any defunct processes belonging to 928108
[2026-02-01 12:02:39] 2026-02-01 10:49:22,659 | INFO     | ready for new job
[2026-02-01 12:02:39] 2026-02-01 10:49:22,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 12:02:39] 2026-02-01 10:49:22,663 | INFO     | **************************************
[2026-02-01 12:02:39] 2026-02-01 10:49:22,663 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 12:02:39] 2026-02-01 10:49:22,663 | INFO     | **************************************
[2026-02-01 12:02:39] 2026-02-01 10:49:22,664 | INFO     | 
[2026-02-01 12:02:39] 2026-02-01 10:49:22,675 | INFO     | architecture information:
[2026-02-01 12:02:39] 2026-02-01 10:49:22,676 | INFO     | executing command: cat /etc/os-release
[2026-02-01 12:02:39] 2026-02-01 10:49:22,703 | INFO     | cat /etc/os-release:
[2026-02-01 12:02:39] NAME="CentOS Linux"
[2026-02-01 12:02:39] VERSION="7 (Core)"
[2026-02-01 12:02:39] ID="centos"
[2026-02-01 12:02:39] ID_LIKE="rhel fedora"
[2026-02-01 12:02:39] VERSION_ID="7"
[2026-02-01 12:02:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 12:02:39] ANSI_COLOR="0;31"
[2026-02-01 12:02:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 12:02:39] HOME_URL="https://www.centos.org/"
[2026-02-01 12:02:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 12:02:39] 
[2026-02-01 12:02:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 12:02:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 12:02:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 12:02:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 12:02:39] 
[2026-02-01 12:02:39] 2026-02-01 10:49:22,704 | INFO     | **************************************
[2026-02-01 12:02:39] 2026-02-01 10:49:22,711 | WARNING  | process 928108 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 12:02:39] 2026-02-01 10:49:23,207 | INFO     | executing command: df -mP /scratch/boinc/var/slot84/slots/0
[2026-02-01 12:02:39] 2026-02-01 10:49:23,237 | INFO     | sufficient remaining disk space (3248360521728 B)
[2026-02-01 12:02:39] 2026-02-01 10:49:23,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 12:02:39] 2026-02-01 10:49:23,238 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 12:02:39] 2026-02-01 10:49:23,238 | INFO     | update_server=False
[2026-02-01 12:02:39] 2026-02-01 10:49:23,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 12:02:39] 2026-02-01 10:49:23,367 | INFO     | using path: /scratch/boinc/var/slot84/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 12:02:39] 2026-02-01 10:49:23,468 | INFO     | all data control threads have been joined
[2026-02-01 12:02:39] 2026-02-01 10:49:23,985 | INFO     | all job control threads have been joined
[2026-02-01 12:02:39] 2026-02-01 10:49:24,111 | INFO     | number of running child processes to parent process 928108: 1
[2026-02-01 12:02:39] 2026-02-01 10:49:24,112 | INFO     | maximum number of monitored processes: 6
[2026-02-01 12:02:39] 2026-02-01 10:49:24,112 | INFO     | aborting job monitoring since job object (job id=6984062742) has expired
[2026-02-01 12:02:39] 2026-02-01 10:49:24,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 12:02:39] 2026-02-01 10:49:24,112 | INFO     | will abort loop
[2026-02-01 12:02:39] 2026-02-01 10:49:24,243 | INFO     | [job] retrieve thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:24,314 | INFO     | [job] validate thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:24,447 | INFO     | [payload] validate_post thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:24,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 12:02:39] 2026-02-01 10:49:24,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 12:02:39] 2026-02-01 10:49:24,473 | INFO     | [data] control thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:24,481 | INFO     | all payload control threads have been joined
[2026-02-01 12:02:39] 2026-02-01 10:49:24,746 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:24,983 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 12:02:39] 2026-02-01 10:49:24,991 | INFO     | [job] control thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,118 | INFO     | [job] job monitor thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,225 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,228 | INFO     | [data] copytool_in thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,258 | INFO     | [payload] failed_post thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,353 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,455 | INFO     | [job] queue monitor thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,486 | INFO     | [payload] control thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:25,604 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:26,473 | INFO     | [data] copytool_out thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:28,989 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 12:02:39] 2026-02-01 10:49:51,855 | INFO     | PID=922996 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 12:02:39] 2026-02-01 10:49:51,855 | INFO     | .. there are 10 such processes running
[2026-02-01 12:02:39] 2026-02-01 10:49:51,857 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 12:02:39] 2026-02-01 10:49:51,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 12:02:39] 2026-02-01 10:49:51,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 12:02:39] 2026-02-01 10:50:08,400 | INFO     | [monitor] cgroup control has ended
[2026-02-01 12:02:39] 2026-02-01 10:50:10,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23402649327424)>', '<ExcThread(monitor, started 23401800398592)>']
[2026-02-01 12:02:39] 2026-02-01 10:50:10,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 12:02:39] 2026-02-01 10:50:10,960 | INFO     | [monitor] control thread has ended
[2026-02-01 12:02:39] 2026-02-01 10:50:15,376 | INFO     | all workflow threads have been joined
[2026-02-01 12:02:39] 2026-02-01 10:50:15,377 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 12:02:39] 2026-02-01 10:50:15,377 | INFO     | traces error code: 0
[2026-02-01 12:02:39] 2026-02-01 10:50:15,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 12:02:39] 2026-02-01 10:50:15,531 [wrapper] ==== pilot stdout END ====
[2026-02-01 12:02:39] 2026-02-01 10:50:15,535 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 12:02:39] 2026-02-01 10:50:15,538 [wrapper] pilotpid: 922996
[2026-02-01 12:02:39] 2026-02-01 10:50:15,542 [wrapper] Pilot exit status: 0
[2026-02-01 12:02:39] 2026-02-01 10:50:15,556 [wrapper] pandaids: 6984062742
[2026-02-01 12:02:39] 2026-02-01 10:50:15,740 [wrapper] cleanup supervisor_pilot 1154144 922997
[2026-02-01 12:02:39] 2026-02-01 10:50:15,745 [wrapper] Test setup, not cleaning
[2026-02-01 12:02:39] 2026-02-01 10:50:15,750 [wrapper] apfmon messages muted
[2026-02-01 12:02:39] 2026-02-01 10:50:15,754 [wrapper] ==== wrapper stdout END ====
[2026-02-01 12:02:39] 2026-02-01 10:50:15,758 [wrapper] ==== wrapper stderr END ====
[2026-02-01 12:02:39]  *** Error codes and diagnostics ***
[2026-02-01 12:02:39]     "exeErrorCode": 0,
[2026-02-01 12:02:39]     "exeErrorDiag": "",
[2026-02-01 12:02:39]     "pilotErrorCode": 0,
[2026-02-01 12:02:39]     "pilotErrorDiag": "",
[2026-02-01 12:02:39]  *** Listing of results directory ***
[2026-02-01 12:02:39] total 664752
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc    584422 Jan 26 08:37 pilot3.tar.gz
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc      5111 Jan 26 08:38 queuedata.json
[2026-02-01 12:02:39] -rwx------ 1 boinc boinc     36322 Jan 26 08:38 runpilot2-wrapper.sh
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc       100 Feb  1 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 12:02:39] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 08:55 run_atlas
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc       105 Feb  1 08:55 job.xml
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc      6687 Feb  1 08:55 init_data.xml
[2026-02-01 12:02:39] -rw-r--r-- 2 boinc boinc 491787246 Feb  1 08:55 EVNT.48317869._000061.pool.root.1
[2026-02-01 12:02:39] -rw-r--r-- 2 boinc boinc     15845 Feb  1 08:55 start_atlas.sh
[2026-02-01 12:02:39] drwxrwx--x 2 boinc boinc      4096 Feb  1 08:55 shared
[2026-02-01 12:02:39] -rw-r--r-- 2 boinc boinc    597747 Feb  1 08:55 input.tar.gz
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc         0 Feb  1 08:55 boinc_lockfile
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc      2515 Feb  1 08:55 pandaJob.out
[2026-02-01 12:02:39] -rw------- 1 boinc boinc   1010520 Feb  1 08:55 agis_schedconf.cvmfs.json
[2026-02-01 12:02:39] -rw------- 1 boinc boinc   1511668 Feb  1 08:55 agis_ddmendpoints.agis.ALL.json
[2026-02-01 12:02:39] -rw------- 1 boinc boinc       442 Feb  1 08:55 workernode_map.json
[2026-02-01 12:02:39] drwx------ 5 boinc boinc      4096 Feb  1 08:55 pilot3
[2026-02-01 12:02:39] -rw------- 1 boinc boinc 181345947 Feb  1 11:48 HITS.48317872._003045.pool.root.1
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc       529 Feb  1 11:48 boinc_task_state.xml
[2026-02-01 12:02:39] -rw------- 1 boinc boinc      1025 Feb  1 11:49 memory_monitor_summary.json
[2026-02-01 12:02:39] -rw------- 1 boinc boinc    369133 Feb  1 11:49 log.48317872._003045.job.log.tgz.1
[2026-02-01 12:02:39] -rw------- 1 boinc boinc      6345 Feb  1 11:49 heartbeat.json
[2026-02-01 12:02:39] -rw------- 1 boinc boinc        95 Feb  1 11:49 pilot_heartbeat.json
[2026-02-01 12:02:39] -rw------- 1 boinc boinc      5361 Feb  1 11:50 pilotlog.txt
[2026-02-01 12:02:39] -rw------- 1 boinc boinc   1444897 Feb  1 11:50 log.48317872._003045.job.log.1
[2026-02-01 12:02:39] -rw------- 1 boinc boinc       357 Feb  1 11:50 output.list
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc       620 Feb  1 11:50 runtime_log
[2026-02-01 12:02:39] -rw------- 1 boinc boinc   1832960 Feb  1 11:50 result.tar.gz
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc      9205 Feb  1 11:50 runtime_log.err
[2026-02-01 12:02:39] -rw------- 1 boinc boinc       665 Feb  1 11:50 MjWLDmfMW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHJ9KDmUy6rRn.diag
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc        26 Feb  1 12:02 wrapper_checkpoint.txt
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc      8192 Feb  1 12:02 boinc_mmap_file
[2026-02-01 12:02:39] -rw-r--r-- 1 boinc boinc     20855 Feb  1 12:02 stderr.txt
[2026-02-01 12:02:39] HITS file was successfully produced:
[2026-02-01 12:02:39] -rw------- 1 boinc boinc 181345947 Feb  1 11:48 shared/HITS.pool.root.1
[2026-02-01 12:02:39]  *** Contents of shared directory: ***
[2026-02-01 12:02:39] total 659760
[2026-02-01 12:02:39] -rw-r--r-- 2 boinc boinc 491787246 Feb  1 08:55 ATLAS.root_0
[2026-02-01 12:02:39] -rw-r--r-- 2 boinc boinc     15845 Feb  1 08:55 start_atlas.sh
[2026-02-01 12:02:39] -rw-r--r-- 2 boinc boinc    597747 Feb  1 08:55 input.tar.gz
[2026-02-01 12:02:39] -rw------- 1 boinc boinc 181345947 Feb  1 11:48 HITS.pool.root.1
[2026-02-01 12:02:39] -rw------- 1 boinc boinc   1832960 Feb  1 11:50 result.tar.gz
12:02:40 (918695): run_atlas exited; CPU time 40792.887298
12:02:40 (918695): called boinc_finish(0)

</stderr_txt>
]]>

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