Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:58:46 (1820108): wrapper (7.7.26015): starting
13:58:46 (1820108): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 13:58:46] Arguments: --nthreads 2
[2026-01-27 13:58:46] Threads: 2
[2026-01-27 13:58:46] Checking for CVMFS
[2026-01-27 13:58:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 13:58:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 13:58:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 13:58:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 13:58:47] 2.9.2.0 843047 9673 62324 155585 2 49 24684148 36864000 0 130560 0 2920533 99.981 312422 7424 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 13:58:47] CVMFS is ok
[2026-01-27 13:58:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 13:58:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 13:58:47] Further information can be found at the LHC@home message board.
[2026-01-27 13:58:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 13:58:47] Checking for apptainer binary...
[2026-01-27 13:58:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 13:58:47] Running /usr/bin/apptainer --version
[2026-01-27 13:58:47] apptainer version 1.4.1-1.1
[2026-01-27 13:58:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 13:58:47] thA331
[2026-01-27 13:58:47] apptainer works
[2026-01-27 13:58:47] Set ATHENA_PROC_NUMBER=2
[2026-01-27 13:58:47] Set ATHENA_CORE_NUMBER=2
[2026-01-27 13:58:47] Starting ATLAS job with PandaID=6984048941
[2026-01-27 13:58:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 17:13:33]  *** The last 200 lines of the pilot log: ***
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | job 6984048941 has completed (purged errors)
[2026-01-27 17:13:33] 2026-01-27 16:13:20,769 | INFO     | overall cleanup function is called
[2026-01-27 17:13:33] 2026-01-27 16:13:21,773 | INFO     | --- collectZombieJob: --- 10, [1828541]
[2026-01-27 17:13:33] 2026-01-27 16:13:21,773 | INFO     | zombie collector waiting for pid 1828541
[2026-01-27 17:13:33] 2026-01-27 16:13:21,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 17:13:33] 2026-01-27 16:13:21,774 | INFO     | collected zombie processes
[2026-01-27 17:13:33] 2026-01-27 16:13:21,774 | INFO     | will attempt to kill all subprocesses of pid=1828541
[2026-01-27 17:13:33] 2026-01-27 16:13:21,808 | INFO     | process IDs to be killed: [1828541] (in reverse order)
[2026-01-27 17:13:33] 2026-01-27 16:13:21,830 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 17:13:33] 2026-01-27 16:13:21,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 17:13:33] 2026-01-27 16:13:21,834 | INFO     | did not find any defunct processes belonging to 1828541
[2026-01-27 17:13:33] 2026-01-27 16:13:21,838 | INFO     | did not find any defunct processes belonging to 1828541
[2026-01-27 17:13:33] 2026-01-27 16:13:21,838 | INFO     | ready for new job
[2026-01-27 17:13:33] 2026-01-27 16:13:21,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 17:13:33] 2026-01-27 16:13:21,841 | INFO     | **************************************
[2026-01-27 17:13:33] 2026-01-27 16:13:21,841 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 17:13:33] 2026-01-27 16:13:21,841 | INFO     | **************************************
[2026-01-27 17:13:33] 2026-01-27 16:13:21,842 | INFO     | 
[2026-01-27 17:13:33] 2026-01-27 16:13:21,843 | INFO     | architecture information:
[2026-01-27 17:13:33] 2026-01-27 16:13:21,843 | INFO     | executing command: cat /etc/os-release
[2026-01-27 17:13:33] 2026-01-27 16:13:21,872 | INFO     | cat /etc/os-release:
[2026-01-27 17:13:33] NAME="CentOS Linux"
[2026-01-27 17:13:33] VERSION="7 (Core)"
[2026-01-27 17:13:33] ID="centos"
[2026-01-27 17:13:33] ID_LIKE="rhel fedora"
[2026-01-27 17:13:33] VERSION_ID="7"
[2026-01-27 17:13:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 17:13:33] ANSI_COLOR="0;31"
[2026-01-27 17:13:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 17:13:33] HOME_URL="https://www.centos.org/"
[2026-01-27 17:13:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 17:13:33] 
[2026-01-27 17:13:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 17:13:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 17:13:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 17:13:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 17:13:33] 
[2026-01-27 17:13:33] 2026-01-27 16:13:21,873 | INFO     | **************************************
[2026-01-27 17:13:33] 2026-01-27 16:13:22,376 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 17:13:33] 2026-01-27 16:13:22,388 | INFO     | sufficient remaining disk space (235265851392 B)
[2026-01-27 17:13:33] 2026-01-27 16:13:22,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | INFO     | update_server=False
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 17:13:33] 2026-01-27 16:13:22,389 | INFO     | aborting loop
[2026-01-27 17:13:33] 2026-01-27 16:13:22,643 | INFO     | all data control threads have been joined
[2026-01-27 17:13:33] 2026-01-27 16:13:22,794 | INFO     | all payload control threads have been joined
[2026-01-27 17:13:33] 2026-01-27 16:13:23,394 | INFO     | [job] retrieve thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,395 | INFO     | [job] job monitor thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,395 | INFO     | [job] queue monitor thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,406 | INFO     | [data] copytool_in thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,649 | INFO     | [data] control thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,713 | INFO     | all job control threads have been joined
[2026-01-27 17:13:33] 2026-01-27 16:13:23,800 | INFO     | [payload] control thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,876 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,879 | INFO     | [payload] failed_post thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:23,915 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,395 | INFO     | [data] copytool_out thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,503 | INFO     | [payload] validate_post thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,582 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,582 | INFO     | [job] validate thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,621 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,719 | INFO     | [job] control thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:24,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 17:13:33] 2026-01-27 16:13:25,065 | INFO     | [monitor] cgroup control has ended
[2026-01-27 17:13:33] 2026-01-27 16:13:28,733 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 17:13:33] 2026-01-27 16:13:28,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764786018112)>', '<ExcThread(monitor, started 139764040709888)>']
[2026-01-27 17:13:33] 2026-01-27 16:13:29,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 17:13:33] 2026-01-27 16:13:29,423 | INFO     | [monitor] control thread has ended
[2026-01-27 17:13:33] 2026-01-27 16:13:33,801 | INFO     | all workflow threads have been joined
[2026-01-27 17:13:33] 2026-01-27 16:13:33,801 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 17:13:33] 2026-01-27 16:13:33,802 | INFO     | traces error code: 0
[2026-01-27 17:13:33] 2026-01-27 16:13:33,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 17:13:33] 2026-01-27 16:13:33,844 [wrapper] ==== pilot stdout END ====
[2026-01-27 17:13:33] 2026-01-27 16:13:33,846 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 17:13:33] 2026-01-27 16:13:33,849 [wrapper] pilotpid: 1824134
[2026-01-27 17:13:33] 2026-01-27 16:13:33,851 [wrapper] Pilot exit status: 0
[2026-01-27 17:13:33] 2026-01-27 16:13:33,857 [wrapper] pandaids: 6984048941
[2026-01-27 17:13:33] 2026-01-27 16:13:33,870 [wrapper] cleanup supervisor_pilot 1833628 1824135
[2026-01-27 17:13:33] 2026-01-27 16:13:33,872 [wrapper] Test setup, not cleaning
[2026-01-27 17:13:33] 2026-01-27 16:13:33,874 [wrapper] apfmon messages muted
[2026-01-27 17:13:33] 2026-01-27 16:13:33,876 [wrapper] ==== wrapper stdout END ====
[2026-01-27 17:13:33] 2026-01-27 16:13:33,878 [wrapper] ==== wrapper stderr END ====
[2026-01-27 17:13:33]  *** Error codes and diagnostics ***
[2026-01-27 17:13:33]     "exeErrorCode": 0,
[2026-01-27 17:13:33]     "exeErrorDiag": "",
[2026-01-27 17:13:33]     "pilotErrorCode": 0,
[2026-01-27 17:13:33]     "pilotErrorDiag": "",
[2026-01-27 17:13:33]  *** Listing of results directory ***
[2026-01-27 17:13:33] total 463776
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 17:13:33] -rwx------ 1 boinc boinc     36322 Jan 26 06:15 runpilot2-wrapper.sh
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:16 queuedata.json
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc       100 Jan 27 13:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 17:13:33] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 13:58 run_atlas
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc       105 Jan 27 13:58 job.xml
[2026-01-27 17:13:33] -rw-r--r-- 2 boinc boinc 271466378 Jan 27 13:58 EVNT.48329532._000004.pool.root.1
[2026-01-27 17:13:33] -rw-r--r-- 2 boinc boinc    597777 Jan 27 13:58 input.tar.gz
[2026-01-27 17:13:33] -rw-r--r-- 2 boinc boinc     15845 Jan 27 13:58 start_atlas.sh
[2026-01-27 17:13:33] drwxrwx--x 2 boinc boinc      4096 Jan 27 13:58 shared
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc         0 Jan 27 13:58 boinc_setup_complete
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc      6206 Jan 27 13:58 init_data.xml
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc         0 Jan 27 13:58 boinc_lockfile
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc      2606 Jan 27 13:58 pandaJob.out
[2026-01-27 17:13:33] -rw------- 1 boinc boinc   1002845 Jan 27 13:59 agis_schedconf.cvmfs.json
[2026-01-27 17:13:33] -rw------- 1 boinc boinc       419 Jan 27 13:59 workernode_map.json
[2026-01-27 17:13:33] drwx------ 5 boinc boinc      4096 Jan 27 13:59 pilot3
[2026-01-27 17:13:33] -rw------- 1 boinc boinc        95 Jan 27 17:12 pilot_heartbeat.json
[2026-01-27 17:13:33] -rw------- 1 boinc boinc 195571945 Jan 27 17:12 HITS.48329534._000078.pool.root.1
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc       530 Jan 27 17:13 boinc_task_state.xml
[2026-01-27 17:13:33] -rw------- 1 boinc boinc      1016 Jan 27 17:13 memory_monitor_summary.json
[2026-01-27 17:13:33] -rw------- 1 boinc boinc   1516246 Jan 27 17:13 agis_ddmendpoints.agis.ALL.json
[2026-01-27 17:13:33] -rw------- 1 boinc boinc    320004 Jan 27 17:13 log.48329534._000078.job.log.tgz.1
[2026-01-27 17:13:33] -rw------- 1 boinc boinc      6285 Jan 27 17:13 heartbeat.json
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc      8192 Jan 27 17:13 boinc_mmap_file
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc        28 Jan 27 17:13 wrapper_checkpoint.txt
[2026-01-27 17:13:33] -rw------- 1 boinc boinc      4552 Jan 27 17:13 pilotlog.txt
[2026-01-27 17:13:33] -rw------- 1 boinc boinc   1653537 Jan 27 17:13 log.48329534._000078.job.log.1
[2026-01-27 17:13:33] -rw------- 1 boinc boinc       357 Jan 27 17:13 output.list
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc       620 Jan 27 17:13 runtime_log
[2026-01-27 17:13:33] -rw------- 1 boinc boinc   1986560 Jan 27 17:13 result.tar.gz
[2026-01-27 17:13:33] -rw------- 1 boinc boinc       661 Jan 27 17:13 znYNDm07T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9d2KDmsqS8nm.diag
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc      8897 Jan 27 17:13 runtime_log.err
[2026-01-27 17:13:33] -rw-r--r-- 1 boinc boinc     11952 Jan 27 17:13 stderr.txt
[2026-01-27 17:13:33] HITS file was successfully produced:
[2026-01-27 17:13:33] -rw------- 1 boinc boinc 195571945 Jan 27 17:12 shared/HITS.pool.root.1
[2026-01-27 17:13:33]  *** Contents of shared directory: ***
[2026-01-27 17:13:33] total 458644
[2026-01-27 17:13:33] -rw-r--r-- 2 boinc boinc 271466378 Jan 27 13:58 ATLAS.root_0
[2026-01-27 17:13:33] -rw-r--r-- 2 boinc boinc    597777 Jan 27 13:58 input.tar.gz
[2026-01-27 17:13:33] -rw-r--r-- 2 boinc boinc     15845 Jan 27 13:58 start_atlas.sh
[2026-01-27 17:13:33] -rw------- 1 boinc boinc 195571945 Jan 27 17:12 HITS.pool.root.1
[2026-01-27 17:13:33] -rw------- 1 boinc boinc   1986560 Jan 27 17:13 result.tar.gz
17:13:35 (1820108): run_atlas exited; CPU time 22847.180931
17:13:35 (1820108): called boinc_finish(0)

</stderr_txt>
]]>

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