Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:15:35 (1682774): wrapper (7.7.26015): starting
11:15:35 (1682774): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 11:15:35] Arguments: --nthreads 3
[2026-01-27 11:15:35] Threads: 3
[2026-01-27 11:15:35] Checking for CVMFS
[2026-01-27 11:15:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 11:15:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 11:15:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 11:15:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 11:15:35] 2.9.2.0 2182370 9597 91168 155581 1 49 26572735 36864000 0 130560 0 4309621 99.986 311972 6567 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 11:15:35] CVMFS is ok
[2026-01-27 11:15:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 11:15:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 11:15:35] Further information can be found at the LHC@home message board.
[2026-01-27 11:15:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 11:15:35] Checking for apptainer binary...
[2026-01-27 11:15:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 11:15:35] Running /usr/bin/apptainer --version
[2026-01-27 11:15:35] apptainer version 1.4.1-1.1
[2026-01-27 11:15:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 11:15:35] atlasA303
[2026-01-27 11:15:35] apptainer works
[2026-01-27 11:15:35] Set ATHENA_PROC_NUMBER=3
[2026-01-27 11:15:35] Set ATHENA_CORE_NUMBER=3
[2026-01-27 11:15:35] Starting ATLAS job with PandaID=6982691042
[2026-01-27 11:15:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 12:34:02]  *** The last 200 lines of the pilot log: ***
[2026-01-27 12:34:02] 2026-01-27 11:33:29,732 | INFO     | job 6982691042 has completed (purged errors)
[2026-01-27 12:34:02] 2026-01-27 11:33:29,732 | INFO     | overall cleanup function is called
[2026-01-27 12:34:02] 2026-01-27 11:33:29,777 | INFO     | PID=1686860 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 12:34:02] 2026-01-27 11:33:30,739 | INFO     | --- collectZombieJob: --- 10, [1691375]
[2026-01-27 12:34:02] 2026-01-27 11:33:30,739 | INFO     | zombie collector waiting for pid 1691375
[2026-01-27 12:34:02] 2026-01-27 11:33:30,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 12:34:02] 2026-01-27 11:33:30,739 | INFO     | collected zombie processes
[2026-01-27 12:34:02] 2026-01-27 11:33:30,739 | INFO     | will attempt to kill all subprocesses of pid=1691375
[2026-01-27 12:34:02] 2026-01-27 11:33:30,782 | INFO     | process IDs to be killed: [1691375] (in reverse order)
[2026-01-27 12:34:02] 2026-01-27 11:33:30,806 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 12:34:02] 2026-01-27 11:33:30,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 12:34:02] 2026-01-27 11:33:30,807 | INFO     | did not find any defunct processes belonging to 1691375
[2026-01-27 12:34:02] 2026-01-27 11:33:30,808 | INFO     | did not find any defunct processes belonging to 1691375
[2026-01-27 12:34:02] 2026-01-27 11:33:30,808 | INFO     | ready for new job
[2026-01-27 12:34:02] 2026-01-27 11:33:30,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 12:34:02] 2026-01-27 11:33:30,809 | INFO     | **************************************
[2026-01-27 12:34:02] 2026-01-27 11:33:30,809 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 12:34:02] 2026-01-27 11:33:30,809 | INFO     | **************************************
[2026-01-27 12:34:02] 2026-01-27 11:33:30,809 | INFO     | 
[2026-01-27 12:34:02] 2026-01-27 11:33:30,809 | INFO     | architecture information:
[2026-01-27 12:34:02] 2026-01-27 11:33:30,810 | INFO     | executing command: cat /etc/os-release
[2026-01-27 12:34:02] 2026-01-27 11:33:30,818 | INFO     | cat /etc/os-release:
[2026-01-27 12:34:02] NAME="CentOS Linux"
[2026-01-27 12:34:02] VERSION="7 (Core)"
[2026-01-27 12:34:02] ID="centos"
[2026-01-27 12:34:02] ID_LIKE="rhel fedora"
[2026-01-27 12:34:02] VERSION_ID="7"
[2026-01-27 12:34:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 12:34:02] ANSI_COLOR="0;31"
[2026-01-27 12:34:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 12:34:02] HOME_URL="https://www.centos.org/"
[2026-01-27 12:34:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 12:34:02] 
[2026-01-27 12:34:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 12:34:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 12:34:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 12:34:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 12:34:02] 
[2026-01-27 12:34:02] 2026-01-27 11:33:30,819 | INFO     | **************************************
[2026-01-27 12:34:02] 2026-01-27 11:33:31,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 12:34:02] 2026-01-27 11:33:31,330 | INFO     | sufficient remaining disk space (377045909504 B)
[2026-01-27 12:34:02] 2026-01-27 11:33:31,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 12:34:02] 2026-01-27 11:33:31,330 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 12:34:02] 2026-01-27 11:33:31,330 | INFO     | update_server=False
[2026-01-27 12:34:02] 2026-01-27 11:33:31,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 12:34:02] 2026-01-27 11:33:31,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:34:02] 2026-01-27 11:33:31,492 | INFO     | all data control threads have been joined
[2026-01-27 12:34:02] 2026-01-27 11:33:31,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 12:34:02] 2026-01-27 11:33:31,497 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 12:34:02] 2026-01-27 11:33:31,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:34:02] 2026-01-27 11:33:31,497 | INFO     | will abort loop
[2026-01-27 12:34:02] 2026-01-27 11:33:32,032 | INFO     | all payload control threads have been joined
[2026-01-27 12:34:02] 2026-01-27 11:33:32,336 | INFO     | [job] queue monitor thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:32,336 | INFO     | [job] retrieve thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:32,343 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:32,395 | INFO     | all job control threads have been joined
[2026-01-27 12:34:02] 2026-01-27 11:33:32,494 | INFO     | [data] control thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:32,502 | INFO     | [job] job monitor thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:32,673 | INFO     | [payload] validate_post thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:32,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 12:34:02] 2026-01-27 11:33:32,992 | INFO     | [job] validate thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:33,038 | INFO     | [payload] control thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:33,118 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:33,127 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:33,276 | INFO     | [data] copytool_in thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:33,401 | INFO     | [job] control thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:33,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 12:34:02] 2026-01-27 11:33:33,624 | INFO     | [payload] failed_post thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:34,684 | INFO     | [data] copytool_out thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:37,443 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:41,954 | INFO     | job.realtimelogging is not enabled
[2026-01-27 12:34:02] 2026-01-27 11:33:42,960 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 12:34:02] 2026-01-27 11:33:50,405 | INFO     | [monitor] cgroup control has ended
[2026-01-27 12:34:02] 2026-01-27 11:33:52,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295254624064)>', '<ExcThread(monitor, started 140294603388672)>']
[2026-01-27 12:34:02] 2026-01-27 11:33:57,370 | INFO     | all workflow threads have been joined
[2026-01-27 12:34:02] 2026-01-27 11:33:57,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 12:34:02] 2026-01-27 11:33:57,370 | INFO     | traces error code: 0
[2026-01-27 12:34:02] 2026-01-27 11:33:57,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 12:34:02] 2026-01-27 11:34:01,898 | INFO     | PID=1686860 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 12:34:02] 2026-01-27 11:34:01,898 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 12:34:02] 2026-01-27 11:34:01,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 12:34:02] 2026-01-27 11:34:01,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 12:34:02] 2026-01-27 11:34:01,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 12:34:02] 2026-01-27 11:34:01,899 | INFO     | [monitor] control thread has ended
[2026-01-27 12:34:02] 2026-01-27 11:34:01,944 [wrapper] ==== pilot stdout END ====
[2026-01-27 12:34:02] 2026-01-27 11:34:01,946 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 12:34:02] 2026-01-27 11:34:01,949 [wrapper] pilotpid: 1686860
[2026-01-27 12:34:02] 2026-01-27 11:34:01,951 [wrapper] Pilot exit status: 0
[2026-01-27 12:34:02] 2026-01-27 11:34:01,958 [wrapper] pandaids: 6982691042
[2026-01-27 12:34:02] 2026-01-27 11:34:01,974 [wrapper] cleanup supervisor_pilot 1714159 1686861
[2026-01-27 12:34:02] 2026-01-27 11:34:01,976 [wrapper] Test setup, not cleaning
[2026-01-27 12:34:02] 2026-01-27 11:34:01,978 [wrapper] apfmon messages muted
[2026-01-27 12:34:02] 2026-01-27 11:34:01,981 [wrapper] ==== wrapper stdout END ====
[2026-01-27 12:34:02] 2026-01-27 11:34:01,983 [wrapper] ==== wrapper stderr END ====
[2026-01-27 12:34:02]  *** Error codes and diagnostics ***
[2026-01-27 12:34:02]     "exeErrorCode": 0,
[2026-01-27 12:34:02]     "exeErrorDiag": "",
[2026-01-27 12:34:02]     "pilotErrorCode": 0,
[2026-01-27 12:34:02]     "pilotErrorDiag": "",
[2026-01-27 12:34:02]  *** Listing of results directory ***
[2026-01-27 12:34:02] total 674460
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc    584422 Jan 25 06:15 pilot3.tar.gz
[2026-01-27 12:34:02] -rwx------ 1 boinc boinc     36322 Jan 25 06:17 runpilot2-wrapper.sh
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc      5111 Jan 25 06:18 queuedata.json
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc       100 Jan 27 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 12:34:02] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 11:15 run_atlas
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc       105 Jan 27 11:15 job.xml
[2026-01-27 12:34:02] -rw-r--r-- 2 boinc boinc 500493043 Jan 27 11:15 EVNT.48310824._000116.pool.root.1
[2026-01-27 12:34:02] drwxrwx--x 2 boinc boinc      4096 Jan 27 11:15 shared
[2026-01-27 12:34:02] -rw-r--r-- 2 boinc boinc    597762 Jan 27 11:15 input.tar.gz
[2026-01-27 12:34:02] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:15 start_atlas.sh
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:15 boinc_setup_complete
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc      6447 Jan 27 11:15 init_data.xml
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:15 boinc_lockfile
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc      2524 Jan 27 11:15 pandaJob.out
[2026-01-27 12:34:02] -rw------- 1 boinc boinc   1002845 Jan 27 11:15 agis_schedconf.cvmfs.json
[2026-01-27 12:34:02] -rw------- 1 boinc boinc   1516246 Jan 27 11:15 agis_ddmendpoints.agis.ALL.json
[2026-01-27 12:34:02] -rw------- 1 boinc boinc       426 Jan 27 11:15 workernode_map.json
[2026-01-27 12:34:02] drwx------ 5 boinc boinc      4096 Jan 27 11:15 pilot3
[2026-01-27 12:34:02] -rw------- 1 boinc boinc        95 Jan 27 12:33 pilot_heartbeat.json
[2026-01-27 12:34:02] -rw------- 1 boinc boinc 184300003 Jan 27 12:33 HITS.48310826._009903.pool.root.1
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc       530 Jan 27 12:33 boinc_task_state.xml
[2026-01-27 12:34:02] -rw------- 1 boinc boinc      1015 Jan 27 12:33 memory_monitor_summary.json
[2026-01-27 12:34:02] -rw------- 1 boinc boinc    281298 Jan 27 12:33 log.48310826._009903.job.log.tgz.1
[2026-01-27 12:34:02] -rw------- 1 boinc boinc      6302 Jan 27 12:33 heartbeat.json
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc        27 Jan 27 12:34 wrapper_checkpoint.txt
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc      8192 Jan 27 12:34 boinc_mmap_file
[2026-01-27 12:34:02] -rw------- 1 boinc boinc       747 Jan 27 12:34 pilotlog.txt
[2026-01-27 12:34:02] -rw------- 1 boinc boinc    687993 Jan 27 12:34 log.48310826._009903.job.log.1
[2026-01-27 12:34:02] -rw------- 1 boinc boinc       357 Jan 27 12:34 output.list
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc       620 Jan 27 12:34 runtime_log
[2026-01-27 12:34:02] -rw------- 1 boinc boinc    983040 Jan 27 12:34 result.tar.gz
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc      8911 Jan 27 12:34 runtime_log.err
[2026-01-27 12:34:02] -rw------- 1 boinc boinc       660 Jan 27 12:34 PWGMDm9f738n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6F0KDmOTBkxn.diag
[2026-01-27 12:34:02] -rw-r--r-- 1 boinc boinc     11358 Jan 27 12:34 stderr.txt
[2026-01-27 12:34:02] HITS file was successfully produced:
[2026-01-27 12:34:02] -rw------- 1 boinc boinc 184300003 Jan 27 12:33 shared/HITS.pool.root.1
[2026-01-27 12:34:02]  *** Contents of shared directory: ***
[2026-01-27 12:34:02] total 670316
[2026-01-27 12:34:02] -rw-r--r-- 2 boinc boinc 500493043 Jan 27 11:15 ATLAS.root_0
[2026-01-27 12:34:02] -rw-r--r-- 2 boinc boinc    597762 Jan 27 11:15 input.tar.gz
[2026-01-27 12:34:02] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:15 start_atlas.sh
[2026-01-27 12:34:02] -rw------- 1 boinc boinc 184300003 Jan 27 12:33 HITS.pool.root.1
[2026-01-27 12:34:02] -rw------- 1 boinc boinc    983040 Jan 27 12:34 result.tar.gz
12:34:03 (1682774): run_atlas exited; CPU time 13300.648405
12:34:03 (1682774): called boinc_finish(0)

</stderr_txt>
]]>

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