Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:10:07 (557600): wrapper (7.7.26015): starting
12:10:07 (557600): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 12:10:07] Arguments: --nthreads 12
[2026-01-27 12:10:07] Threads: 12
[2026-01-27 12:10:07] Checking for CVMFS
[2026-01-27 12:10:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:10:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:10:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:10:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:10:07] 2.13.3.0 437865 125 48324 155567 3 188 2317831 4096000 879 130560 0 368330 99.994 5664 1239 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-27 12:10:07] CVMFS is ok
[2026-01-27 12:10:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:10:07] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-27 12:10:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-27 12:10:07] Further information can be found at the LHC@home message board.
[2026-01-27 12:10:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:10:07] Checking for apptainer binary...
[2026-01-27 12:10:07] apptainer is not installed, using version from CVMFS
[2026-01-27 12:10:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:10:07] dc
[2026-01-27 12:10:07] apptainer works
[2026-01-27 12:10:07] Set ATHENA_PROC_NUMBER=12
[2026-01-27 12:10:07] Set ATHENA_CORE_NUMBER=12
[2026-01-27 12:10:07] Starting ATLAS job with PandaID=6984043732
[2026-01-27 12:10:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 12:47:27]  *** The last 200 lines of the pilot log: ***
[2026-01-27 12:47:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 12:47:27]  is_altstaged=None
[2026-01-27 12:47:27]  is_tar=False
[2026-01-27 12:47:27]  lfn=log.48317872._002400.job.log.tgz.1
[2026-01-27 12:47:27]  mtime=0
[2026-01-27 12:47:27]  protocol_id=None
[2026-01-27 12:47:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 12:47:27]  replicas=None
[2026-01-27 12:47:27]  scope=mc23_13p6TeV
[2026-01-27 12:47:27]  status=None
[2026-01-27 12:47:27]  status_code=0
[2026-01-27 12:47:27]  storage_token=
[2026-01-27 12:47:27]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6984043732/log.48317872._002400.job.log.tgz.1
[2026-01-27 12:47:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/c9/log.48317872._002400.job.log.tgz.1
[2026-01-27 12:47:27]  workdir=None
[2026-01-27 12:47:27] ]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,128 | INFO     | transferring file log.48317872._002400.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6984043732/log.48317872._002400.job.log.tgz.1 to /var/lib/boinc
[2026-01-27 12:47:27] 2026-01-27 01:46:31,128 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6984043732/log.48317872._002400.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.483178
[2026-01-27 12:47:27] 2026-01-27 01:46:31,137 | INFO     | adding to output.list: log.48317872._002400.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/c9/log.48317872._002400.job.log.tg
[2026-01-27 12:47:27] 2026-01-27 01:46:31,138 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 12:47:27] 2026-01-27 01:46:31,138 | INFO     | summary of transferred files:
[2026-01-27 12:47:27] 2026-01-27 01:46:31,138 | INFO     |  -- lfn=log.48317872._002400.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 12:47:27] 2026-01-27 01:46:31,138 | INFO     | stage-out finished correctly
[2026-01-27 12:47:27] 2026-01-27 01:46:31,164 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 12:47:27] 2026-01-27 01:46:31,188 | INFO     | job 6984043732 has state=finished
[2026-01-27 12:47:27] 2026-01-27 01:46:31,188 | INFO     | preparing for final server update for job 6984043732 in state='finished'
[2026-01-27 12:47:27] 2026-01-27 01:46:31,188 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-6984043732/jobReport.json
[2026-01-27 12:47:27] 2026-01-27 01:46:31,189 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-01-27 12:47:27] 2026-01-27 01:46:31,189 | INFO     | this job has now completed (state=finished)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,189 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,189 | INFO     | log transfer has been attempted: DONE
[2026-01-27 12:47:27] 2026-01-27 01:46:31,189 | INFO     | job 6984043732 has finished - writing final server update
[2026-01-27 12:47:27] 2026-01-27 01:46:31,189 | INFO     | total number of processed events: 400 (read)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6984043732/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | INFO     | extracted standard info from prmon json
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | INFO     | fitting pss+swap vs Time
[2026-01-27 12:47:27] 2026-01-27 01:46:31,191 | INFO     | sum of square deviations: 7553630.0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | sum of deviations: -141832563.99999997
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | mean x: 1769477392.0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | mean y: 2696157.724137931
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | intersect: 33227717167.145172
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | chi2: 0.0066122221276200144
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | current memory leak: -18.78 B/s (using 29 data points, chi2=0.01)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | could have reported an average CPU frequency of 3393 MHz (5 samples)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | ..............................
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . Timing measurements:
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . get job = 0 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . initial setup = 6 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . payload setup = 2 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . stage-in = 0 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . payload execution = 2155 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . stage-out = 0 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | . log creation = 0 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,192 | INFO     | ..............................
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | 
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | job summary report
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | --------------------------------------------------
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | PanDA job id: 6984043732
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | task id: 48317872
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | errors: (none)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | pilot state: finished 
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | transexitcode: 0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | exeerrorcode: 0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | exeerrordiag: 
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | exitcode: 0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | exitmsg: OK
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | cpuconsumptiontime: 22721 s
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | nevents: 400
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | neventsw: 0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | pid: 565920
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | pgrp: 565920
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | corecount: 12
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | event service: False
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | sizes: {0: 2284239, 11: 2284239, 2161: 2309339, 2162: 2318577}
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | --------------------------------------------------
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | 
[2026-01-27 12:47:27] 2026-01-27 01:46:31,658 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | job 6984043732 has completed (purged errors)
[2026-01-27 12:47:27] 2026-01-27 01:46:31,671 | INFO     | overall cleanup function is called
[2026-01-27 12:47:27] 2026-01-27 01:46:32,677 | INFO     | --- collectZombieJob: --- 10, [565920]
[2026-01-27 12:47:27] 2026-01-27 01:46:32,678 | INFO     | zombie collector waiting for pid 565920
[2026-01-27 12:47:27] 2026-01-27 01:46:32,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 12:47:27] 2026-01-27 01:46:32,678 | INFO     | collected zombie processes
[2026-01-27 12:47:27] 2026-01-27 01:46:32,678 | INFO     | will attempt to kill all subprocesses of pid=565920
[2026-01-27 12:47:27] 2026-01-27 01:46:32,712 | INFO     | process IDs to be killed: [565920] (in reverse order)
[2026-01-27 12:47:27] 2026-01-27 01:46:32,733 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 12:47:27] 2026-01-27 01:46:32,733 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 12:47:27] 2026-01-27 01:46:32,734 | INFO     | did not find any defunct processes belonging to 565920
[2026-01-27 12:47:27] 2026-01-27 01:46:32,735 | INFO     | did not find any defunct processes belonging to 565920
[2026-01-27 12:47:27] 2026-01-27 01:46:32,735 | INFO     | ready for new job
[2026-01-27 12:47:27] 2026-01-27 01:46:32,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | **************************************
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | **************************************
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | 
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | pilot is running in a VM
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | architecture information:
[2026-01-27 12:47:27] 2026-01-27 01:46:32,736 | INFO     | executing command: cat /etc/os-release
[2026-01-27 12:47:27] 2026-01-27 01:46:32,742 | INFO     | cat /etc/os-release:
[2026-01-27 12:47:27] NAME="CentOS Linux"
[2026-01-27 12:47:27] VERSION="7 (Core)"
[2026-01-27 12:47:27] ID="centos"
[2026-01-27 12:47:27] ID_LIKE="rhel fedora"
[2026-01-27 12:47:27] VERSION_ID="7"
[2026-01-27 12:47:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 12:47:27] ANSI_COLOR="0;31"
[2026-01-27 12:47:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 12:47:27] HOME_URL="https://www.centos.org/"
[2026-01-27 12:47:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 12:47:27] 
[2026-01-27 12:47:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 12:47:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 12:47:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 12:47:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 12:47:27] 
[2026-01-27 12:47:27] 2026-01-27 01:46:32,742 | INFO     | **************************************
[2026-01-27 12:47:27] 2026-01-27 01:46:33,245 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-01-27 12:47:27] 2026-01-27 01:46:33,255 | INFO     | sufficient remaining disk space (176173350912 B)
[2026-01-27 12:47:27] 2026-01-27 01:46:33,255 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 12:47:27] 2026-01-27 01:46:33,255 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 12:47:27] 2026-01-27 01:46:33,255 | INFO     | update_server=False
[2026-01-27 12:47:27] 2026-01-27 01:46:33,255 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 12:47:27] 2026-01-27 01:46:33,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 12:47:27] 2026-01-27 01:46:33,543 | INFO     | all job control threads have been joined
[2026-01-27 12:47:27] 2026-01-27 01:46:34,016 | WARNING  | process 565920 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 12:47:27] 2026-01-27 01:46:34,041 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 12:47:27] 2026-01-27 01:46:34,073 | INFO     | number of running child processes to parent process 565920: 1
[2026-01-27 12:47:27] 2026-01-27 01:46:34,073 | INFO     | maximum number of monitored processes: 6
[2026-01-27 12:47:27] 2026-01-27 01:46:34,073 | INFO     | aborting job monitoring since job object (job id=6984043732) has expired
[2026-01-27 12:47:27] 2026-01-27 01:46:34,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:47:27] 2026-01-27 01:46:34,073 | INFO     | will abort loop
[2026-01-27 12:47:27] 2026-01-27 01:46:34,145 | INFO     | all data control threads have been joined
[2026-01-27 12:47:27] 2026-01-27 01:46:34,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 12:47:27] 2026-01-27 01:46:34,260 | INFO     | [job] retrieve thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:34,338 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:34,341 | INFO     | [payload] validate_post thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:34,439 | INFO     | [data] copytool_in thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:34,523 | INFO     | all payload control threads have been joined
[2026-01-27 12:47:27] 2026-01-27 01:46:34,548 | INFO     | [job] control thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,079 | INFO     | [job] job monitor thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,150 | INFO     | [data] control thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,184 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,435 | INFO     | [payload] failed_post thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,528 | INFO     | [payload] control thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,703 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:35,729 | INFO     | [job] validate thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:36,175 | INFO     | [data] copytool_out thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:36,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:47:27] 2026-01-27 01:46:37,233 | INFO     | [job] queue monitor thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:37,261 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:46:43,646 | INFO     | job.realtimelogging is not enabled
[2026-01-27 12:47:27] 2026-01-27 01:46:44,652 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 12:47:27] 2026-01-27 01:47:02,916 | INFO     | PID=561403 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 12:47:27] 2026-01-27 01:47:02,917 | INFO     | .. there are 2 such processes running
[2026-01-27 12:47:27] 2026-01-27 01:47:02,917 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 12:47:27] 2026-01-27 01:47:02,917 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 12:47:27] 2026-01-27 01:47:02,917 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 12:47:27] 2026-01-27 01:47:20,923 | INFO     | [monitor] cgroup control has ended
[2026-01-27 12:47:27] 2026-01-27 01:47:22,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125780516071232)>', '<ExcThread(monitor, started 125779954345728)>']
[2026-01-27 12:47:27] 2026-01-27 01:47:23,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 12:47:27] 2026-01-27 01:47:23,018 | INFO     | [monitor] control thread has ended
[2026-01-27 12:47:27] 2026-01-27 01:47:27,062 | INFO     | all workflow threads have been joined
[2026-01-27 12:47:27] 2026-01-27 01:47:27,062 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 12:47:27] 2026-01-27 01:47:27,062 | INFO     | traces error code: 0
[2026-01-27 12:47:27] 2026-01-27 01:47:27,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 12:47:27] 2026-01-27 01:47:27,099 [wrapper] ==== pilot stdout END ====
[2026-01-27 12:47:27] 2026-01-27 01:47:27,101 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 12:47:27] 2026-01-27 01:47:27,102 [wrapper] pilotpid: 561403
[2026-01-27 12:47:27] 2026-01-27 01:47:27,104 [wrapper] Pilot exit status: 0
[2026-01-27 12:47:27] 2026-01-27 01:47:27,108 [wrapper] pandaids: 6984043732
[2026-01-27 12:47:27] 2026-01-27 01:47:27,121 [wrapper] cleanup supervisor_pilot  570603 561404
[2026-01-27 12:47:27] 2026-01-27 01:47:27,122 [wrapper] Test setup, not cleaning
[2026-01-27 12:47:27] 2026-01-27 01:47:27,123 [wrapper] apfmon messages muted
[2026-01-27 12:47:27] 2026-01-27 01:47:27,125 [wrapper] ==== wrapper stdout END ====
[2026-01-27 12:47:27] 2026-01-27 01:47:27,126 [wrapper] ==== wrapper stderr END ====
[2026-01-27 12:47:27]  *** Error codes and diagnostics ***
[2026-01-27 12:47:27]     "exeErrorCode": 0,
[2026-01-27 12:47:27]     "exeErrorDiag": "",
[2026-01-27 12:47:27]     "pilotErrorCode": 0,
[2026-01-27 12:47:27]     "pilotErrorDiag": "",
[2026-01-27 12:47:27]  *** Listing of results directory ***
[2026-01-27 12:47:27] total 660872
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc    584422 Jan 26 16:14 pilot3.tar.gz
[2026-01-27 12:47:27] -rwx------ 1 boinc boinc     36322 Jan 26 16:15 runpilot2-wrapper.sh
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc      5111 Jan 26 16:16 queuedata.json
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 12:47:27] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:10 run_atlas
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:10 job.xml
[2026-01-27 12:47:27] -rw-r--r-- 2 boinc boinc 489710000 Jan 27 12:10 EVNT.48317869._000048.pool.root.1
[2026-01-27 12:47:27] -rw-r--r-- 2 boinc boinc    597757 Jan 27 12:10 input.tar.gz
[2026-01-27 12:47:27] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:10 start_atlas.sh
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:10 boinc_setup_complete
[2026-01-27 12:47:27] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:10 shared
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc      6288 Jan 27 12:10 init_data.xml
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:10 boinc_lockfile
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc      2514 Jan 27 12:10 pandaJob.out
[2026-01-27 12:47:27] -rw------- 1 boinc boinc   1006441 Jan 27 12:10 agis_schedconf.cvmfs.json
[2026-01-27 12:47:27] -rw------- 1 boinc boinc   1516246 Jan 27 12:10 agis_ddmendpoints.agis.ALL.json
[2026-01-27 12:47:27] -rw------- 1 boinc boinc       416 Jan 27 12:10 workernode_map.json
[2026-01-27 12:47:27] drwx------ 5 boinc boinc      4096 Jan 27 12:10 pilot3
[2026-01-27 12:47:27] -rw------- 1 boinc boinc 181615889 Jan 27 12:46 HITS.48317872._002400.pool.root.1
[2026-01-27 12:47:27] -rw------- 1 boinc boinc      1013 Jan 27 12:46 memory_monitor_summary.json
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc       530 Jan 27 12:46 boinc_task_state.xml
[2026-01-27 12:47:27] -rw------- 1 boinc boinc        95 Jan 27 12:46 pilot_heartbeat.json
[2026-01-27 12:47:27] -rw------- 1 boinc boinc    377984 Jan 27 12:46 log.48317872._002400.job.log.tgz.1
[2026-01-27 12:47:27] -rw------- 1 boinc boinc      6265 Jan 27 12:46 heartbeat.json
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc        27 Jan 27 12:47 wrapper_checkpoint.txt
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc      8192 Jan 27 12:47 boinc_mmap_file
[2026-01-27 12:47:27] -rw------- 1 boinc boinc      5486 Jan 27 12:47 pilotlog.txt
[2026-01-27 12:47:27] -rw------- 1 boinc boinc    355634 Jan 27 12:47 log.48317872._002400.job.log.1
[2026-01-27 12:47:27] -rw------- 1 boinc boinc       357 Jan 27 12:47 output.list
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc       620 Jan 27 12:47 runtime_log
[2026-01-27 12:47:27] -rw------- 1 boinc boinc    747520 Jan 27 12:47 result.tar.gz
[2026-01-27 12:47:27] -rw------- 1 boinc boinc       636 Jan 27 12:47 J8jNDmu7T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLB9KDm4JWyZm.diag
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc      8856 Jan 27 12:47 runtime_log.err
[2026-01-27 12:47:27] -rw-r--r-- 1 boinc boinc     21475 Jan 27 12:47 stderr.txt
[2026-01-27 12:47:27] HITS file was successfully produced:
[2026-01-27 12:47:27] -rw------- 1 boinc boinc 181615889 Jan 27 12:46 shared/HITS.pool.root.1
[2026-01-27 12:47:27]  *** Contents of shared directory: ***
[2026-01-27 12:47:27] total 656936
[2026-01-27 12:47:27] -rw-r--r-- 2 boinc boinc 489710000 Jan 27 12:10 ATLAS.root_0
[2026-01-27 12:47:27] -rw-r--r-- 2 boinc boinc    597757 Jan 27 12:10 input.tar.gz
[2026-01-27 12:47:27] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:10 start_atlas.sh
[2026-01-27 12:47:27] -rw------- 1 boinc boinc 181615889 Jan 27 12:46 HITS.pool.root.1
[2026-01-27 12:47:27] -rw------- 1 boinc boinc    747520 Jan 27 12:47 result.tar.gz
12:47:29 (557600): run_atlas exited; CPU time 22728.847062
12:47:29 (557600): called boinc_finish(0)

</stderr_txt>
]]>

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