Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:29:52 (517959): wrapper (7.7.26015): starting
11:29:52 (517959): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 11:29:52] Arguments: --nthreads 12
[2026-01-27 11:29:52] Threads: 12
[2026-01-27 11:29:52] Checking for CVMFS
[2026-01-27 11:29:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 11:29:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 11:29:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 11:29:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 11:29:53] 2.13.3.0 437865 84 47828 155567 3 50 2316941 4096000 923 130560 0 251800 99.992 5658 1455 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-27 11:29:53] CVMFS is ok
[2026-01-27 11:29:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 11:29:53] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-27 11:29:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-27 11:29:53] Further information can be found at the LHC@home message board.
[2026-01-27 11:29:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 11:29:53] Checking for apptainer binary...
[2026-01-27 11:29:53] apptainer is not installed, using version from CVMFS
[2026-01-27 11:29:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 11:29:53] dc
[2026-01-27 11:29:53] apptainer works
[2026-01-27 11:29:53] Set ATHENA_PROC_NUMBER=12
[2026-01-27 11:29:53] Set ATHENA_CORE_NUMBER=12
[2026-01-27 11:29:53] Starting ATLAS job with PandaID=6984043686
[2026-01-27 11:29:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 12:06:28]  *** The last 200 lines of the pilot log: ***
[2026-01-27 12:06:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 12:06:28]  replicas=None
[2026-01-27 12:06:28]  scope=mc23_13p6TeV
[2026-01-27 12:06:28]  status=None
[2026-01-27 12:06:28]  status_code=0
[2026-01-27 12:06:28]  storage_token=
[2026-01-27 12:06:28]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6984043686/log.48317872._002354.job.log.tgz.1
[2026-01-27 12:06:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/64/log.48317872._002354.job.log.tgz.1
[2026-01-27 12:06:28]  workdir=None
[2026-01-27 12:06:28] ]
[2026-01-27 12:06:28] 2026-01-27 01:05:34,825 | INFO     | transferring file log.48317872._002354.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6984043686/log.48317872._002354.job.log.tgz.1 to /var/lib/boinc
[2026-01-27 12:06:28] 2026-01-27 01:05:34,825 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6984043686/log.48317872._002354.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.483178
[2026-01-27 12:06:28] 2026-01-27 01:05:34,837 | INFO     | adding to output.list: log.48317872._002354.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/64/log.48317872._002354.job.log.tg
[2026-01-27 12:06:28] 2026-01-27 01:05:34,838 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 12:06:28] 2026-01-27 01:05:34,838 | INFO     | summary of transferred files:
[2026-01-27 12:06:28] 2026-01-27 01:05:34,838 | INFO     |  -- lfn=log.48317872._002354.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 12:06:28] 2026-01-27 01:05:34,838 | INFO     | stage-out finished correctly
[2026-01-27 12:06:28] 2026-01-27 01:05:35,273 | INFO     | time since job start (2116s) is within the limit (349056.0s)
[2026-01-27 12:06:28] 2026-01-27 01:05:35,434 | INFO     | monitor loop #165: job 0:6984043686 is in state 'finished'
[2026-01-27 12:06:28] 2026-01-27 01:05:35,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 12:06:28] 2026-01-27 01:05:37,279 | INFO     | time since job start (2118s) is within the limit (349056.0s)
[2026-01-27 12:06:28] 2026-01-27 01:05:37,417 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 12:06:28] 2026-01-27 01:05:37,942 | INFO     | monitor loop #166: job 0:6984043686 is in state 'finished'
[2026-01-27 12:06:28] 2026-01-27 01:05:37,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 12:06:28] 2026-01-27 01:05:39,284 | INFO     | time since job start (2120s) is within the limit (349056.0s)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,006 | INFO     | job 6984043686 has state=finished
[2026-01-27 12:06:28] 2026-01-27 01:05:40,006 | INFO     | preparing for final server update for job 6984043686 in state='finished'
[2026-01-27 12:06:28] 2026-01-27 01:05:40,446 | INFO     | monitor loop #167: job 0:6984043686 is in state 'finished'
[2026-01-27 12:06:28] 2026-01-27 01:05:40,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,809 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,809 | INFO     | reading metadata from: /var/lib/boinc-client/slots/2/PanDA_Pilot-6984043686/jobReport.json
[2026-01-27 12:06:28] 2026-01-27 01:05:40,810 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/2/workernode_map.json
[2026-01-27 12:06:28] 2026-01-27 01:05:40,811 | INFO     | this job has now completed (state=finished)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,811 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,811 | INFO     | log transfer has been attempted: DONE
[2026-01-27 12:06:28] 2026-01-27 01:05:40,811 | INFO     | job 6984043686 has finished - writing final server update
[2026-01-27 12:06:28] 2026-01-27 01:05:40,811 | INFO     | total number of processed events: 400 (read)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,814 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6984043686/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,814 | INFO     | extracted standard info from prmon json
[2026-01-27 12:06:28] 2026-01-27 01:05:40,814 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 12:06:28] 2026-01-27 01:05:40,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 12:06:28] 2026-01-27 01:05:40,814 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 12:06:28] 2026-01-27 01:05:40,814 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 12:06:28] 2026-01-27 01:05:40,815 | INFO     | fitting pss+swap vs Time
[2026-01-27 12:06:28] 2026-01-27 01:05:40,815 | INFO     | sum of square deviations: 6798267.0
[2026-01-27 12:06:28] 2026-01-27 01:05:40,815 | INFO     | sum of deviations: 180463223.5
[2026-01-27 12:06:28] 2026-01-27 01:05:40,815 | INFO     | mean x: 1769474963.5
[2026-01-27 12:06:28] 2026-01-27 01:05:40,815 | INFO     | mean y: 2889668.25
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | intersect: -46968662907.686615
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | chi2: 2.7848560769639564e-05
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | current memory leak: 26.55 B/s (using 28 data points, chi2=0.00)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | could have reported an average CPU frequency of 3393 MHz (5 samples)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | ..............................
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . Timing measurements:
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . get job = 0 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . initial setup = 7 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . payload setup = 3 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . stage-in = 0 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . payload execution = 2096 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . stage-out = 0 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | . log creation = 0 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,816 | INFO     | ..............................
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | 
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | job summary report
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | --------------------------------------------------
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | PanDA job id: 6984043686
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | task id: 48317872
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | errors: (none)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | pilot state: finished 
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | transexitcode: 0
[2026-01-27 12:06:28] 2026-01-27 01:05:40,850 | INFO     | exeerrorcode: 0
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | exeerrordiag: 
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | exitcode: 0
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | exitmsg: OK
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | cpuconsumptiontime: 21785 s
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | nevents: 400
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | neventsw: 0
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | pid: 526618
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | pgrp: 526618
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | corecount: 12
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | event service: False
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | sizes: {0: 2284239, 11: 2284239, 2103: 2309311, 2105: 2318323, 2107: 2318379, 2111: 2318605}
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | --------------------------------------------------
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | 
[2026-01-27 12:06:28] 2026-01-27 01:05:40,851 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-01-27 12:06:28] 2026-01-27 01:05:40,866 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,866 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,866 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,866 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | job 6984043686 has completed (purged errors)
[2026-01-27 12:06:28] 2026-01-27 01:05:40,867 | INFO     | overall cleanup function is called
[2026-01-27 12:06:28] 2026-01-27 01:05:41,874 | INFO     | --- collectZombieJob: --- 10, [526618]
[2026-01-27 12:06:28] 2026-01-27 01:05:41,874 | INFO     | zombie collector waiting for pid 526618
[2026-01-27 12:06:28] 2026-01-27 01:05:41,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 12:06:28] 2026-01-27 01:05:41,874 | INFO     | collected zombie processes
[2026-01-27 12:06:28] 2026-01-27 01:05:41,874 | INFO     | will attempt to kill all subprocesses of pid=526618
[2026-01-27 12:06:28] 2026-01-27 01:05:41,922 | INFO     | process IDs to be killed: [526618] (in reverse order)
[2026-01-27 12:06:28] 2026-01-27 01:05:41,950 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 12:06:28] 2026-01-27 01:05:41,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 12:06:28] 2026-01-27 01:05:41,951 | INFO     | did not find any defunct processes belonging to 526618
[2026-01-27 12:06:28] 2026-01-27 01:05:41,952 | INFO     | did not find any defunct processes belonging to 526618
[2026-01-27 12:06:28] 2026-01-27 01:05:41,952 | INFO     | ready for new job
[2026-01-27 12:06:28] 2026-01-27 01:05:41,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 12:06:28] 2026-01-27 01:05:41,953 | INFO     | **************************************
[2026-01-27 12:06:28] 2026-01-27 01:05:41,953 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 12:06:28] 2026-01-27 01:05:41,953 | INFO     | **************************************
[2026-01-27 12:06:28] 2026-01-27 01:05:41,953 | INFO     | 
[2026-01-27 12:06:28] 2026-01-27 01:05:41,954 | INFO     | pilot is running in a VM
[2026-01-27 12:06:28] 2026-01-27 01:05:41,954 | INFO     | architecture information:
[2026-01-27 12:06:28] 2026-01-27 01:05:41,954 | INFO     | executing command: cat /etc/os-release
[2026-01-27 12:06:28] 2026-01-27 01:05:41,964 | INFO     | cat /etc/os-release:
[2026-01-27 12:06:28] NAME="CentOS Linux"
[2026-01-27 12:06:28] VERSION="7 (Core)"
[2026-01-27 12:06:28] ID="centos"
[2026-01-27 12:06:28] ID_LIKE="rhel fedora"
[2026-01-27 12:06:28] VERSION_ID="7"
[2026-01-27 12:06:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 12:06:28] ANSI_COLOR="0;31"
[2026-01-27 12:06:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 12:06:28] HOME_URL="https://www.centos.org/"
[2026-01-27 12:06:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 12:06:28] 
[2026-01-27 12:06:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 12:06:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 12:06:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 12:06:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 12:06:28] 
[2026-01-27 12:06:28] 2026-01-27 01:05:41,964 | INFO     | **************************************
[2026-01-27 12:06:28] 2026-01-27 01:05:42,467 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-01-27 12:06:28] 2026-01-27 01:05:42,478 | INFO     | sufficient remaining disk space (175181398016 B)
[2026-01-27 12:06:28] 2026-01-27 01:05:42,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 12:06:28] 2026-01-27 01:05:42,478 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 12:06:28] 2026-01-27 01:05:42,478 | INFO     | update_server=False
[2026-01-27 12:06:28] 2026-01-27 01:05:42,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 12:06:28] 2026-01-27 01:05:42,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:06:28] 2026-01-27 01:05:42,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 12:06:28] 2026-01-27 01:05:42,949 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 12:06:28] 2026-01-27 01:05:42,949 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 12:06:28] 2026-01-27 01:05:42,949 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:06:28] 2026-01-27 01:05:42,949 | INFO     | will abort loop
[2026-01-27 12:06:28] 2026-01-27 01:05:43,126 | INFO     | all payload control threads have been joined
[2026-01-27 12:06:28] 2026-01-27 01:05:43,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 12:06:28] 2026-01-27 01:05:43,483 | INFO     | [job] retrieve thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:43,483 | INFO     | [job] queue monitor thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:43,503 | INFO     | all data control threads have been joined
[2026-01-27 12:06:28] 2026-01-27 01:05:43,588 | INFO     | all job control threads have been joined
[2026-01-27 12:06:28] 2026-01-27 01:05:43,700 | INFO     | [payload] failed_post thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:43,950 | INFO     | [job] job monitor thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,132 | INFO     | [payload] control thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,227 | INFO     | [payload] validate_post thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,304 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,351 | INFO     | [job] validate thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,415 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,466 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,508 | INFO     | [data] control thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,549 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,594 | INFO     | [job] control thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,608 | INFO     | [data] copytool_in thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:44,886 | INFO     | [data] copytool_out thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:05:47,462 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 12:06:28] 2026-01-27 01:06:12,423 | INFO     | PID=522102 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 12:06:28] 2026-01-27 01:06:12,423 | INFO     | .. there are 2 such processes running
[2026-01-27 12:06:28] 2026-01-27 01:06:12,423 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 12:06:28] 2026-01-27 01:06:12,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 12:06:28] 2026-01-27 01:06:12,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 12:06:28] 2026-01-27 01:06:21,934 | INFO     | [monitor] cgroup control has ended
[2026-01-27 12:06:28] 2026-01-27 01:06:23,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124735977310016)>', '<ExcThread(monitor, started 124735279052544)>']
[2026-01-27 12:06:28] 2026-01-27 01:06:24,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 12:06:28] 2026-01-27 01:06:24,476 | INFO     | [monitor] control thread has ended
[2026-01-27 12:06:28] 2026-01-27 01:06:28,794 | INFO     | all workflow threads have been joined
[2026-01-27 12:06:28] 2026-01-27 01:06:28,795 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 12:06:28] 2026-01-27 01:06:28,795 | INFO     | traces error code: 0
[2026-01-27 12:06:28] 2026-01-27 01:06:28,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 12:06:28] 2026-01-27 01:06:28,847 [wrapper] ==== pilot stdout END ====
[2026-01-27 12:06:28] 2026-01-27 01:06:28,848 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 12:06:28] 2026-01-27 01:06:28,850 [wrapper] pilotpid: 522102
[2026-01-27 12:06:28] 2026-01-27 01:06:28,851 [wrapper] Pilot exit status: 0
[2026-01-27 12:06:28] 2026-01-27 01:06:28,857 [wrapper] pandaids: 6984043686
[2026-01-27 12:06:28] 2026-01-27 01:06:28,876 [wrapper] cleanup supervisor_pilot  544203 522103
[2026-01-27 12:06:28] 2026-01-27 01:06:28,877 [wrapper] Test setup, not cleaning
[2026-01-27 12:06:28] 2026-01-27 01:06:28,879 [wrapper] apfmon messages muted
[2026-01-27 12:06:28] 2026-01-27 01:06:28,880 [wrapper] ==== wrapper stdout END ====
[2026-01-27 12:06:28] 2026-01-27 01:06:28,882 [wrapper] ==== wrapper stderr END ====
[2026-01-27 12:06:28]  *** Error codes and diagnostics ***
[2026-01-27 12:06:28]     "exeErrorCode": 0,
[2026-01-27 12:06:28]     "exeErrorDiag": "",
[2026-01-27 12:06:28]     "pilotErrorCode": 0,
[2026-01-27 12:06:28]     "pilotErrorDiag": "",
[2026-01-27 12:06:28]  *** Listing of results directory ***
[2026-01-27 12:06:28] total 668220
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc    584422 Jan 26 16:14 pilot3.tar.gz
[2026-01-27 12:06:28] -rwx------ 1 boinc boinc     36322 Jan 26 16:15 runpilot2-wrapper.sh
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc      5111 Jan 26 16:16 queuedata.json
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc       100 Jan 27 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 12:06:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 11:29 run_atlas
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc       105 Jan 27 11:29 job.xml
[2026-01-27 12:06:28] -rw-r--r-- 2 boinc boinc 492757001 Jan 27 11:29 EVNT.48317869._000047.pool.root.1
[2026-01-27 12:06:28] -rw-r--r-- 2 boinc boinc    597751 Jan 27 11:29 input.tar.gz
[2026-01-27 12:06:28] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:29 start_atlas.sh
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:29 boinc_setup_complete
[2026-01-27 12:06:28] drwxrwx--x 2 boinc boinc      4096 Jan 27 11:29 shared
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc      6288 Jan 27 11:29 init_data.xml
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:29 boinc_lockfile
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc      2514 Jan 27 11:29 pandaJob.out
[2026-01-27 12:06:28] -rw------- 1 boinc boinc   1006441 Jan 27 11:30 agis_schedconf.cvmfs.json
[2026-01-27 12:06:28] -rw------- 1 boinc boinc   1516246 Jan 27 11:30 agis_ddmendpoints.agis.ALL.json
[2026-01-27 12:06:28] -rw------- 1 boinc boinc       416 Jan 27 11:30 workernode_map.json
[2026-01-27 12:06:28] drwx------ 5 boinc boinc      4096 Jan 27 11:30 pilot3
[2026-01-27 12:06:28] -rw------- 1 boinc boinc 186097030 Jan 27 12:05 HITS.48317872._002354.pool.root.1
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc       530 Jan 27 12:05 boinc_task_state.xml
[2026-01-27 12:06:28] -rw------- 1 boinc boinc      1016 Jan 27 12:05 memory_monitor_summary.json
[2026-01-27 12:06:28] -rw------- 1 boinc boinc        95 Jan 27 12:05 pilot_heartbeat.json
[2026-01-27 12:06:28] -rw------- 1 boinc boinc    380775 Jan 27 12:05 log.48317872._002354.job.log.tgz.1
[2026-01-27 12:06:28] -rw------- 1 boinc boinc      6254 Jan 27 12:05 heartbeat.json
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc      8192 Jan 27 12:06 boinc_mmap_file
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc        27 Jan 27 12:06 wrapper_checkpoint.txt
[2026-01-27 12:06:28] -rw------- 1 boinc boinc      5074 Jan 27 12:06 pilotlog.txt
[2026-01-27 12:06:28] -rw------- 1 boinc boinc    348228 Jan 27 12:06 log.48317872._002354.job.log.1
[2026-01-27 12:06:28] -rw------- 1 boinc boinc       357 Jan 27 12:06 output.list
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc       620 Jan 27 12:06 runtime_log
[2026-01-27 12:06:28] -rw------- 1 boinc boinc    747520 Jan 27 12:06 result.tar.gz
[2026-01-27 12:06:28] -rw------- 1 boinc boinc       635 Jan 27 12:06 cVINDmu7T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4A9KDmzKnVJm.diag
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc      8856 Jan 27 12:06 runtime_log.err
[2026-01-27 12:06:28] -rw-r--r-- 1 boinc boinc     21955 Jan 27 12:06 stderr.txt
[2026-01-27 12:06:28] HITS file was successfully produced:
[2026-01-27 12:06:28] -rw------- 1 boinc boinc 186097030 Jan 27 12:05 shared/HITS.pool.root.1
[2026-01-27 12:06:28]  *** Contents of shared directory: ***
[2026-01-27 12:06:28] total 664288
[2026-01-27 12:06:28] -rw-r--r-- 2 boinc boinc 492757001 Jan 27 11:29 ATLAS.root_0
[2026-01-27 12:06:28] -rw-r--r-- 2 boinc boinc    597751 Jan 27 11:29 input.tar.gz
[2026-01-27 12:06:28] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:29 start_atlas.sh
[2026-01-27 12:06:28] -rw------- 1 boinc boinc 186097030 Jan 27 12:05 HITS.pool.root.1
[2026-01-27 12:06:28] -rw------- 1 boinc boinc    747520 Jan 27 12:06 result.tar.gz
12:06:30 (517959): run_atlas exited; CPU time 21789.319073
12:06:30 (517959): called boinc_finish(0)

</stderr_txt>
]]>

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