Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:21:03 (3056539): wrapper (7.7.26015): starting
06:21:03 (3056539): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 06:21:03] Arguments: --nthreads 4
[2026-01-28 06:21:03] Threads: 4
[2026-01-28 06:21:03] Checking for CVMFS
[2026-01-28 06:21:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 06:21:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 06:21:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 06:21:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 06:21:05] 2.13.3.0 897907 10108 62984 155595 3 50 4097886 6144001 2733 130560 0 14649958 99.982 527063 109 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2026-01-28 06:21:05] CVMFS is ok
[2026-01-28 06:21:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 06:21:05] Checking for apptainer binary...
[2026-01-28 06:21:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 06:21:05] Running /usr/bin/apptainer --version
[2026-01-28 06:21:05] apptainer version 1.4.0
[2026-01-28 06:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 06:21:06] Zen
[2026-01-28 06:21:06] apptainer works
[2026-01-28 06:21:06] Set ATHENA_PROC_NUMBER=4
[2026-01-28 06:21:06] Set ATHENA_CORE_NUMBER=4
[2026-01-28 06:21:06] Starting ATLAS job with PandaID=6983467791
[2026-01-28 06:21:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 08:09:58]  *** The last 200 lines of the pilot log: ***
[2026-01-28 08:09:58] 2026-01-27 21:08:57,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,224 | INFO     | log transfer has been attempted: DONE
[2026-01-28 08:09:58] 2026-01-27 21:08:57,224 | INFO     | job 6983467791 has finished - writing final server update
[2026-01-28 08:09:58] 2026-01-27 21:08:57,224 | INFO     | total number of processed events: 400 (read)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,228 | INFO     | using path: /home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6983467791/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,228 | INFO     | extracted standard info from prmon json
[2026-01-28 08:09:58] 2026-01-27 21:08:57,228 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 08:09:58] 2026-01-27 21:08:57,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 08:09:58] 2026-01-27 21:08:57,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 08:09:58] 2026-01-27 21:08:57,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | fitting pss+swap vs Time
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | sum of square deviations: 369281342.5
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | sum of deviations: 9444961047.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | mean x: 1769544923.5
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | mean y: 2257986.4150943398
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | intersect: -45256684044.684395
[2026-01-28 08:09:58] 2026-01-27 21:08:57,230 | INFO     | chi2: 2.4189093571456417
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | sum of square deviations: 319447850.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | sum of deviations: 15213966507.000002
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | mean x: 1769544771.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | mean y: 2274888.5346534653
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | intersect: -84273749754.08226
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | chi2: 1.661992200417535
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | current chi2=1.661992200417535 (change=31.29167095460258 %)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,231 | INFO     | sum of square deviations: 274312120.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | sum of deviations: 14421297645.500002
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | mean x: 1769544618.5
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | mean y: 2272208.1354166665
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | intersect: -93027265241.32634
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | chi2: 1.6652298804206511
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | current chi2=1.6652298804206511 (change=-0.19480717191710087 %)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | right removable region: 95
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | sum of square deviations: 319447850.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,232 | INFO     | sum of deviations: -7628601684.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | mean x: 1769545076.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | mean y: 2309422.3168316833
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | intersect: 42260081846.4778
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | chi2: 0.8130159936672675
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | current chi2=0.8130159936672675 (change=66.38915008263717 %)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | sum of square deviations: 274312120.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | sum of deviations: -5453600110.5
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | mean x: 1769545228.5
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | mean y: 2302049.40625
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | intersect: 35182636238.36716
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | chi2: 0.8021490139804968
[2026-01-28 08:09:58] 2026-01-27 21:08:57,233 | INFO     | current chi2=0.8021490139804968 (change=1.3366255733485777 %)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | left removable region: 20
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | sum of square deviations: 130793150.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | sum of deviations: 348428828.00000006
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | mean x: 1769545198.0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | mean y: 2323383.8
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | intersect: -4711689234.079208
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | chi2: 0.00027212649010291325
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | current memory leak: 2.66 B/s (using 75 data points, chi2=0.00)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | could have reported an average CPU frequency of 4074 MHz (7 samples)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | ..............................
[2026-01-28 08:09:58] 2026-01-27 21:08:57,234 | INFO     | . Timing measurements:
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . get job = 0 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . initial setup = 14 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . payload setup = 4 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . stage-in = 0 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . payload execution = 6410 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . stage-out = 0 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | . log creation = 0 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,235 | INFO     | ..............................
[2026-01-28 08:09:58] 2026-01-27 21:08:57,290 | INFO     | 
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | job summary report
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | --------------------------------------------------
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | PanDA job id: 6983467791
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | task id: 48318034
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | errors: (none)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | pilot state: finished 
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | transexitcode: 0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | exeerrorcode: 0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | exeerrordiag: 
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | exitcode: 0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | exitmsg: OK
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | cpuconsumptiontime: 24479 s
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | nevents: 400
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | neventsw: 0
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | pid: 3065234
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | pgrp: 3065234
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | corecount: 4
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | event service: False
[2026-01-28 08:09:58] 2026-01-27 21:08:57,291 | INFO     | sizes: {0: 2283779, 1: 2284240, 11: 2284240, 6418: 2311388, 6419: 2320408, 6421: 2320492, 6424: 2320814}
[2026-01-28 08:09:58] 2026-01-27 21:08:57,292 | INFO     | --------------------------------------------------
[2026-01-28 08:09:58] 2026-01-27 21:08:57,292 | INFO     | 
[2026-01-28 08:09:58] 2026-01-27 21:08:57,292 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/1
[2026-01-28 08:09:58] 2026-01-27 21:08:57,313 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | job 6983467791 has completed (purged errors)
[2026-01-28 08:09:58] 2026-01-27 21:08:57,314 | INFO     | overall cleanup function is called
[2026-01-28 08:09:58] 2026-01-27 21:08:58,321 | INFO     | --- collectZombieJob: --- 10, [3065234]
[2026-01-28 08:09:58] 2026-01-27 21:08:58,321 | INFO     | zombie collector waiting for pid 3065234
[2026-01-28 08:09:58] 2026-01-27 21:08:58,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 08:09:58] 2026-01-27 21:08:58,322 | INFO     | collected zombie processes
[2026-01-28 08:09:58] 2026-01-27 21:08:58,322 | INFO     | will attempt to kill all subprocesses of pid=3065234
[2026-01-28 08:09:58] 2026-01-27 21:08:58,481 | INFO     | process IDs to be killed: [3065234] (in reverse order)
[2026-01-28 08:09:58] 2026-01-27 21:08:58,542 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 08:09:58] 2026-01-27 21:08:58,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 08:09:58] 2026-01-27 21:08:58,547 | INFO     | did not find any defunct processes belonging to 3065234
[2026-01-28 08:09:58] 2026-01-27 21:08:58,551 | INFO     | did not find any defunct processes belonging to 3065234
[2026-01-28 08:09:58] 2026-01-27 21:08:58,551 | INFO     | ready for new job
[2026-01-28 08:09:58] 2026-01-27 21:08:58,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 08:09:58] 2026-01-27 21:08:58,552 | INFO     | **************************************
[2026-01-28 08:09:58] 2026-01-27 21:08:58,552 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 08:09:58] 2026-01-27 21:08:58,552 | INFO     | **************************************
[2026-01-28 08:09:58] 2026-01-27 21:08:58,552 | INFO     | 
[2026-01-28 08:09:58] 2026-01-27 21:08:58,554 | INFO     | architecture information:
[2026-01-28 08:09:58] 2026-01-27 21:08:58,554 | INFO     | executing command: cat /etc/os-release
[2026-01-28 08:09:58] 2026-01-27 21:08:58,570 | INFO     | cat /etc/os-release:
[2026-01-28 08:09:58] NAME="CentOS Linux"
[2026-01-28 08:09:58] VERSION="7 (Core)"
[2026-01-28 08:09:58] ID="centos"
[2026-01-28 08:09:58] ID_LIKE="rhel fedora"
[2026-01-28 08:09:58] VERSION_ID="7"
[2026-01-28 08:09:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 08:09:58] ANSI_COLOR="0;31"
[2026-01-28 08:09:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 08:09:58] HOME_URL="https://www.centos.org/"
[2026-01-28 08:09:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 08:09:58] 
[2026-01-28 08:09:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 08:09:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 08:09:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 08:09:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 08:09:58] 
[2026-01-28 08:09:58] 2026-01-27 21:08:58,570 | INFO     | **************************************
[2026-01-28 08:09:58] 2026-01-27 21:08:59,072 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/1
[2026-01-28 08:09:58] 2026-01-27 21:08:59,090 | INFO     | sufficient remaining disk space (205107757056 B)
[2026-01-28 08:09:58] 2026-01-27 21:08:59,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 08:09:58] 2026-01-27 21:08:59,090 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 08:09:58] 2026-01-27 21:08:59,090 | INFO     | update_server=False
[2026-01-28 08:09:58] 2026-01-27 21:08:59,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 08:09:58] 2026-01-27 21:08:59,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 08:09:58] 2026-01-27 21:08:59,622 | INFO     | all job control threads have been joined
[2026-01-28 08:09:58] 2026-01-27 21:08:59,706 | INFO     | all payload control threads have been joined
[2026-01-28 08:09:58] 2026-01-27 21:08:59,736 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 08:09:58] 2026-01-27 21:08:59,736 | INFO     | aborting loop
[2026-01-28 08:09:58] 2026-01-27 21:08:59,905 | INFO     | all data control threads have been joined
[2026-01-28 08:09:58] 2026-01-27 21:09:00,096 | INFO     | [job] retrieve thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,096 | INFO     | [job] queue monitor thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,417 | INFO     | [payload] validate_post thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 08:09:58] 2026-01-27 21:09:00,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 08:09:58] 2026-01-27 21:09:00,540 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,628 | INFO     | [job] control thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,711 | INFO     | [payload] control thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,741 | INFO     | [job] job monitor thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,772 | INFO     | [job] validate thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,910 | INFO     | [data] control thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:00,967 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:01,044 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:01,069 | INFO     | [payload] failed_post thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:01,284 | INFO     | [data] copytool_in thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:01,358 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:02,542 | INFO     | [data] copytool_out thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:04,538 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 08:09:58] 2026-01-27 21:09:29,041 | INFO     | PID=3060716 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 08:09:58] 2026-01-27 21:09:29,041 | INFO     | .. there are 4 such processes running
[2026-01-28 08:09:58] 2026-01-27 21:09:29,041 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 08:09:58] 2026-01-27 21:09:29,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 08:09:58] 2026-01-27 21:09:29,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 08:09:58] 2026-01-27 21:09:52,552 | INFO     | [monitor] cgroup control has ended
[2026-01-28 08:09:58] 2026-01-27 21:09:53,406 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129411920250688)>', '<ExcThread(monitor, started 129411433088768)>']
[2026-01-28 08:09:58] 2026-01-27 21:09:54,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 08:09:58] 2026-01-27 21:09:54,163 | INFO     | [monitor] control thread has ended
[2026-01-28 08:09:58] 2026-01-27 21:09:58,431 | INFO     | all workflow threads have been joined
[2026-01-28 08:09:58] 2026-01-27 21:09:58,431 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 08:09:58] 2026-01-27 21:09:58,431 | INFO     | traces error code: 0
[2026-01-28 08:09:58] 2026-01-27 21:09:58,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 08:09:58] 2026-01-27 21:09:58,511 [wrapper] ==== pilot stdout END ====
[2026-01-28 08:09:58] 2026-01-27 21:09:58,513 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 08:09:58] 2026-01-27 21:09:58,515 [wrapper] pilotpid: 3060716
[2026-01-28 08:09:58] 2026-01-27 21:09:58,516 [wrapper] Pilot exit status: 0
[2026-01-28 08:09:58] 2026-01-27 21:09:58,525 [wrapper] pandaids: 6983467791
[2026-01-28 08:09:58] 2026-01-27 21:09:58,555 [wrapper] cleanup supervisor_pilot 3119216 3060717
[2026-01-28 08:09:58] 2026-01-27 21:09:58,557 [wrapper] Test setup, not cleaning
[2026-01-28 08:09:58] 2026-01-27 21:09:58,559 [wrapper] apfmon messages muted
[2026-01-28 08:09:58] 2026-01-27 21:09:58,561 [wrapper] ==== wrapper stdout END ====
[2026-01-28 08:09:58] 2026-01-27 21:09:58,563 [wrapper] ==== wrapper stderr END ====
[2026-01-28 08:09:58]  *** Error codes and diagnostics ***
[2026-01-28 08:09:58]     "exeErrorCode": 0,
[2026-01-28 08:09:58]     "exeErrorDiag": "",
[2026-01-28 08:09:58]     "pilotErrorCode": 0,
[2026-01-28 08:09:58]     "pilotErrorDiag": "",
[2026-01-28 08:09:58]  *** Listing of results directory ***
[2026-01-28 08:09:58] total 677828
[2026-01-28 08:09:58] -rwx------ 1 michael michael     36322 Jan 26 09:57 runpilot2-wrapper.sh
[2026-01-28 08:09:58] -rw-r--r-- 1 michael michael      5111 Jan 26 09:58 queuedata.json
[2026-01-28 08:09:58] -rw-r--r-- 1 michael michael    584422 Jan 26 10:00 pilot3.tar.gz
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael       100 Jan 28 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 08:09:58] -rwxr-xr-x 1 michael michael      7986 Jan 28 06:21 run_atlas
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael       105 Jan 28 06:21 job.xml
[2026-01-28 08:09:58] -rw-r--r-- 2 michael michael 505677743 Jan 28 06:21 EVNT.48318032._000042.pool.root.1
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael      9823 Jan 28 06:21 init_data.xml
[2026-01-28 08:09:58] drwxrwx--x 2 michael michael      4096 Jan 28 06:21 shared
[2026-01-28 08:09:58] -rw-r--r-- 2 michael michael    597758 Jan 28 06:21 input.tar.gz
[2026-01-28 08:09:58] -rw-r--r-- 2 michael michael     15845 Jan 28 06:21 start_atlas.sh
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael         0 Jan 28 06:21 boinc_lockfile
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael      2533 Jan 28 06:21 pandaJob.out
[2026-01-28 08:09:58] -rw------- 1 michael michael        50 Jan 28 06:21 setup.sh.local
[2026-01-28 08:09:58] -rw------- 1 michael michael   1005244 Jan 28 06:21 agis_schedconf.cvmfs.json
[2026-01-28 08:09:58] -rw------- 1 michael michael   1516246 Jan 28 06:21 agis_ddmendpoints.agis.ALL.json
[2026-01-28 08:09:58] -rw------- 1 michael michael       411 Jan 28 06:21 workernode_map.json
[2026-01-28 08:09:58] drwx------ 5 michael michael      4096 Jan 28 06:21 pilot3
[2026-01-28 08:09:58] -rw------- 1 michael michael 181940392 Jan 28 08:08 HITS.48318034._001829.pool.root.1
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael       530 Jan 28 08:08 boinc_task_state.xml
[2026-01-28 08:09:58] -rw------- 1 michael michael        95 Jan 28 08:08 pilot_heartbeat.json
[2026-01-28 08:09:58] -rw------- 1 michael michael      1019 Jan 28 08:08 memory_monitor_summary.json
[2026-01-28 08:09:58] -rw------- 1 michael michael    311260 Jan 28 08:08 log.48318034._001829.job.log.tgz.1
[2026-01-28 08:09:58] -rw------- 1 michael michael      6259 Jan 28 08:08 heartbeat.json
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael        27 Jan 28 08:09 wrapper_checkpoint.txt
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael      8192 Jan 28 08:09 boinc_mmap_file
[2026-01-28 08:09:58] -rw------- 1 michael michael      4831 Jan 28 08:09 pilotlog.txt
[2026-01-28 08:09:58] -rw------- 1 michael michael    954162 Jan 28 08:09 log.48318034._001829.job.log.1
[2026-01-28 08:09:58] -rw------- 1 michael michael       357 Jan 28 08:09 output.list
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael       620 Jan 28 08:09 runtime_log
[2026-01-28 08:09:58] -rw------- 1 michael michael   1280000 Jan 28 08:09 result.tar.gz
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael      9444 Jan 28 08:09 runtime_log.err
[2026-01-28 08:09:58] -rw------- 1 michael michael       642 Jan 28 08:09 boKLDmVEO48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmW31KDmHKkCjn.diag
[2026-01-28 08:09:58] -rw-rw-r-- 1 michael michael     20764 Jan 28 08:09 stderr.txt
[2026-01-28 08:09:58] HITS file was successfully produced:
[2026-01-28 08:09:58] -rw------- 1 michael michael 181940392 Jan 28 08:08 shared/HITS.pool.root.1
[2026-01-28 08:09:58]  *** Contents of shared directory: ***
[2026-01-28 08:09:58] total 673368
[2026-01-28 08:09:58] -rw-r--r-- 2 michael michael 505677743 Jan 28 06:21 ATLAS.root_0
[2026-01-28 08:09:58] -rw-r--r-- 2 michael michael    597758 Jan 28 06:21 input.tar.gz
[2026-01-28 08:09:58] -rw-r--r-- 2 michael michael     15845 Jan 28 06:21 start_atlas.sh
[2026-01-28 08:09:58] -rw------- 1 michael michael 181940392 Jan 28 08:08 HITS.pool.root.1
[2026-01-28 08:09:58] -rw------- 1 michael michael   1280000 Jan 28 08:09 result.tar.gz
08:09:59 (3056539): run_atlas exited; CPU time 24553.551379
08:09:59 (3056539): called boinc_finish(0)

</stderr_txt>
]]>

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