Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:58:51 (1550089): wrapper (7.7.26015): starting
15:58:51 (1550089): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 15:58:51] Arguments: --nthreads 2
[2026-01-27 15:58:51] Threads: 2
[2026-01-27 15:58:51] Checking for CVMFS
[2026-01-27 15:58:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 15:58:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 15:58:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 15:58:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 15:58:52] 2.9.2.0 558283 10011 68548 155587 0 50 21198940 36864000 0 130560 0 2997578 99.980 327631 5503 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 15:58:52] CVMFS is ok
[2026-01-27 15:58:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 15:58:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 15:58:52] Further information can be found at the LHC@home message board.
[2026-01-27 15:58:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 15:58:52] Checking for apptainer binary...
[2026-01-27 15:58:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 15:58:52] Running /usr/bin/apptainer --version
[2026-01-27 15:58:52] apptainer version 1.4.1-1.1
[2026-01-27 15:58:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 15:58:52] thA314b
[2026-01-27 15:58:52] apptainer works
[2026-01-27 15:58:52] Set ATHENA_PROC_NUMBER=2
[2026-01-27 15:58:52] Set ATHENA_CORE_NUMBER=2
[2026-01-27 15:58:52] Starting ATLAS job with PandaID=6984043434
[2026-01-27 15:58:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 18:19:30]  *** The last 200 lines of the pilot log: ***
[2026-01-27 18:19:30] 2026-01-27 17:18:43,621 | INFO     | process IDs to be killed: [1558524] (in reverse order)
[2026-01-27 18:19:30] 2026-01-27 17:18:43,640 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 18:19:30] 2026-01-27 17:18:43,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 18:19:30] 2026-01-27 17:18:43,641 | INFO     | did not find any defunct processes belonging to 1558524
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | did not find any defunct processes belonging to 1558524
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | ready for new job
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | **************************************
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | **************************************
[2026-01-27 18:19:30] 2026-01-27 17:18:43,642 | INFO     | 
[2026-01-27 18:19:30] 2026-01-27 17:18:43,643 | INFO     | architecture information:
[2026-01-27 18:19:30] 2026-01-27 17:18:43,643 | INFO     | executing command: cat /etc/os-release
[2026-01-27 18:19:30] 2026-01-27 17:18:43,651 | INFO     | cat /etc/os-release:
[2026-01-27 18:19:30] NAME="CentOS Linux"
[2026-01-27 18:19:30] VERSION="7 (Core)"
[2026-01-27 18:19:30] ID="centos"
[2026-01-27 18:19:30] ID_LIKE="rhel fedora"
[2026-01-27 18:19:30] VERSION_ID="7"
[2026-01-27 18:19:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 18:19:30] ANSI_COLOR="0;31"
[2026-01-27 18:19:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 18:19:30] HOME_URL="https://www.centos.org/"
[2026-01-27 18:19:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 18:19:30] 
[2026-01-27 18:19:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 18:19:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 18:19:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 18:19:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 18:19:30] 
[2026-01-27 18:19:30] 2026-01-27 17:18:43,651 | INFO     | **************************************
[2026-01-27 18:19:30] 2026-01-27 17:18:44,154 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 18:19:30] 2026-01-27 17:18:44,165 | INFO     | sufficient remaining disk space (502948429824 B)
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | INFO     | update_server=False
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | INFO     | aborting loop
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 18:19:30] 2026-01-27 17:18:44,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 18:19:30] 2026-01-27 17:18:44,565 | INFO     | all data control threads have been joined
[2026-01-27 18:19:30] 2026-01-27 17:18:45,171 | INFO     | [job] retrieve thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:45,172 | INFO     | [job] job monitor thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:45,173 | INFO     | [job] queue monitor thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:45,189 | INFO     | all payload control threads have been joined
[2026-01-27 18:19:30] 2026-01-27 17:18:45,525 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:45,571 | INFO     | [data] control thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:45,716 | INFO     | all job control threads have been joined
[2026-01-27 18:19:30] 2026-01-27 17:18:45,855 | INFO     | [payload] validate_post thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,170 | INFO     | [data] copytool_out thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,195 | INFO     | [payload] control thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,295 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,390 | INFO     | [job] validate thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,480 | INFO     | [data] copytool_in thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,588 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,721 | INFO     | [job] control thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,762 | INFO     | [payload] failed_post thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:46,890 | INFO     | job.realtimelogging is not enabled
[2026-01-27 18:19:30] 2026-01-27 17:18:47,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 18:19:30] 2026-01-27 17:18:47,893 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:18:51,594 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 18:19:30] 2026-01-27 17:19:13,891 | INFO     | PID=1554117 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 18:19:30] 2026-01-27 17:19:13,891 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 18:19:30] 2026-01-27 17:19:13,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 18:19:30] 2026-01-27 17:19:13,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 18:19:30] 2026-01-27 17:19:24,591 | INFO     | [monitor] cgroup control has ended
[2026-01-27 18:19:30] 2026-01-27 17:19:25,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140357860738880)>', '<ExcThread(monitor, started 140357199173376)>']
[2026-01-27 18:19:30] 2026-01-27 17:19:25,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 18:19:30] 2026-01-27 17:19:25,957 | INFO     | [monitor] control thread has ended
[2026-01-27 18:19:30] 2026-01-27 17:19:30,720 | INFO     | all workflow threads have been joined
[2026-01-27 18:19:30] 2026-01-27 17:19:30,720 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 18:19:30] 2026-01-27 17:19:30,720 | INFO     | traces error code: 0
[2026-01-27 18:19:30] 2026-01-27 17:19:30,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 18:19:30] 2026-01-27 17:19:30,760 [wrapper] ==== pilot stdout END ====
[2026-01-27 18:19:30] 2026-01-27 17:19:30,762 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 18:19:30] 2026-01-27 17:19:30,764 [wrapper] pilotpid: 1554117
[2026-01-27 18:19:30] 2026-01-27 17:19:30,766 [wrapper] Pilot exit status: 0
[2026-01-27 18:19:30] 2026-01-27 17:19:30,772 [wrapper] pandaids: 6984043434
[2026-01-27 18:19:30] 2026-01-27 17:19:30,782 [wrapper] cleanup supervisor_pilot 1563490 1554118
[2026-01-27 18:19:30] 2026-01-27 17:19:30,784 [wrapper] Test setup, not cleaning
[2026-01-27 18:19:30] 2026-01-27 17:19:30,786 [wrapper] apfmon messages muted
[2026-01-27 18:19:30] 2026-01-27 17:19:30,788 [wrapper] ==== wrapper stdout END ====
[2026-01-27 18:19:30] 2026-01-27 17:19:30,790 [wrapper] ==== wrapper stderr END ====
[2026-01-27 18:19:30]  *** Error codes and diagnostics ***
[2026-01-27 18:19:30]     "exeErrorCode": 0,
[2026-01-27 18:19:30]     "exeErrorDiag": "",
[2026-01-27 18:19:30]     "pilotErrorCode": 0,
[2026-01-27 18:19:30]     "pilotErrorDiag": "",
[2026-01-27 18:19:30]  *** Listing of results directory ***
[2026-01-27 18:19:30] total 730008
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 18:19:30] -rwx------ 1 boinc boinc     36322 Jan 26 06:17 runpilot2-wrapper.sh
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:21 queuedata.json
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc       100 Jan 27 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 18:19:30] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 15:58 run_atlas
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc       105 Jan 27 15:58 job.xml
[2026-01-27 18:19:30] -rw-r--r-- 2 boinc boinc 535373211 Jan 27 15:58 EVNT.48317909._000027.pool.root.1
[2026-01-27 18:19:30] -rw-r--r-- 2 boinc boinc    597757 Jan 27 15:58 input.tar.gz
[2026-01-27 18:19:30] -rw-r--r-- 2 boinc boinc     15845 Jan 27 15:58 start_atlas.sh
[2026-01-27 18:19:30] drwxrwx--x 2 boinc boinc      4096 Jan 27 15:58 shared
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc         0 Jan 27 15:58 boinc_setup_complete
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc      6207 Jan 27 15:58 init_data.xml
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc         0 Jan 27 15:58 boinc_lockfile
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc      2497 Jan 27 15:58 pandaJob.out
[2026-01-27 18:19:30] -rw------- 1 boinc boinc   1004450 Jan 27 15:59 agis_schedconf.cvmfs.json
[2026-01-27 18:19:30] -rw------- 1 boinc boinc   1516246 Jan 27 15:59 agis_ddmendpoints.agis.ALL.json
[2026-01-27 18:19:30] -rw------- 1 boinc boinc       426 Jan 27 15:59 workernode_map.json
[2026-01-27 18:19:30] drwx------ 5 boinc boinc      4096 Jan 27 15:59 pilot3
[2026-01-27 18:19:30] -rw------- 1 boinc boinc 205253543 Jan 27 18:18 HITS.48317911._000783.pool.root.1
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc       530 Jan 27 18:18 boinc_task_state.xml
[2026-01-27 18:19:30] -rw------- 1 boinc boinc      1011 Jan 27 18:18 memory_monitor_summary.json
[2026-01-27 18:19:30] -rw------- 1 boinc boinc    286632 Jan 27 18:18 log.48317911._000783.job.log.tgz.1
[2026-01-27 18:19:30] -rw------- 1 boinc boinc      6292 Jan 27 18:18 heartbeat.json
[2026-01-27 18:19:30] -rw------- 1 boinc boinc        95 Jan 27 18:19 pilot_heartbeat.json
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc      8192 Jan 27 18:19 boinc_mmap_file
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc        27 Jan 27 18:19 wrapper_checkpoint.txt
[2026-01-27 18:19:30] -rw------- 1 boinc boinc      4820 Jan 27 18:19 pilotlog.txt
[2026-01-27 18:19:30] -rw------- 1 boinc boinc   1196230 Jan 27 18:19 log.48317911._000783.job.log.1
[2026-01-27 18:19:30] -rw------- 1 boinc boinc       357 Jan 27 18:19 output.list
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc       620 Jan 27 18:19 runtime_log
[2026-01-27 18:19:30] -rw------- 1 boinc boinc   1505280 Jan 27 18:19 result.tar.gz
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc      8901 Jan 27 18:19 runtime_log.err
[2026-01-27 18:19:30] -rw------- 1 boinc boinc       658 Jan 27 18:19 PAKMDm59T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHg2KDmykMzIn.diag
[2026-01-27 18:19:30] -rw-r--r-- 1 boinc boinc     10175 Jan 27 18:19 stderr.txt
[2026-01-27 18:19:30] HITS file was successfully produced:
[2026-01-27 18:19:30] -rw------- 1 boinc boinc 205253543 Jan 27 18:18 shared/HITS.pool.root.1
[2026-01-27 18:19:30]  *** Contents of shared directory: ***
[2026-01-27 18:19:30] total 725352
[2026-01-27 18:19:30] -rw-r--r-- 2 boinc boinc 535373211 Jan 27 15:58 ATLAS.root_0
[2026-01-27 18:19:30] -rw-r--r-- 2 boinc boinc    597757 Jan 27 15:58 input.tar.gz
[2026-01-27 18:19:30] -rw-r--r-- 2 boinc boinc     15845 Jan 27 15:58 start_atlas.sh
[2026-01-27 18:19:30] -rw------- 1 boinc boinc 205253543 Jan 27 18:18 HITS.pool.root.1
[2026-01-27 18:19:30] -rw------- 1 boinc boinc   1505280 Jan 27 18:19 result.tar.gz
18:19:32 (1550089): run_atlas exited; CPU time 16322.099600
18:19:32 (1550089): called boinc_finish(0)

</stderr_txt>
]]>

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