Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:23:50 (2260033): wrapper (7.7.26015): starting
12:23:50 (2260033): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 12:23:50] Arguments: --nthreads 3
[2026-01-27 12:23:50] Threads: 3
[2026-01-27 12:23:50] Checking for CVMFS
[2026-01-27 12:23:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:23:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:23:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:23:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:23:51] 2.9.2.0 941362 5706 81760 155583 3 49 23432516 36864001 0 130560 0 2710990 99.986 217086 6236 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 12:23:51] CVMFS is ok
[2026-01-27 12:23:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:23:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 12:23:51] Further information can be found at the LHC@home message board.
[2026-01-27 12:23:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:23:51] Checking for apptainer binary...
[2026-01-27 12:23:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:23:51] Running /usr/bin/apptainer --version
[2026-01-27 12:23:51] apptainer version 1.4.1-1.1
[2026-01-27 12:23:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:23:51] atlasA230
[2026-01-27 12:23:51] apptainer works
[2026-01-27 12:23:51] Set ATHENA_PROC_NUMBER=3
[2026-01-27 12:23:51] Set ATHENA_CORE_NUMBER=3
[2026-01-27 12:23:51] Starting ATLAS job with PandaID=6984043725
[2026-01-27 12:23:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:46:23]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:46:23] 2026-01-27 12:46:03,833 | INFO     | --- collectZombieJob: --- 10, [2268535]
[2026-01-27 13:46:23] 2026-01-27 12:46:03,833 | INFO     | zombie collector waiting for pid 2268535
[2026-01-27 13:46:23] 2026-01-27 12:46:03,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:46:23] 2026-01-27 12:46:03,834 | INFO     | collected zombie processes
[2026-01-27 13:46:23] 2026-01-27 12:46:03,834 | INFO     | will attempt to kill all subprocesses of pid=2268535
[2026-01-27 13:46:23] 2026-01-27 12:46:03,895 | INFO     | process IDs to be killed: [2268535] (in reverse order)
[2026-01-27 13:46:23] 2026-01-27 12:46:03,925 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:46:23] 2026-01-27 12:46:03,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:46:23] 2026-01-27 12:46:03,928 | INFO     | did not find any defunct processes belonging to 2268535
[2026-01-27 13:46:23] 2026-01-27 12:46:03,929 | INFO     | did not find any defunct processes belonging to 2268535
[2026-01-27 13:46:23] 2026-01-27 12:46:03,930 | INFO     | ready for new job
[2026-01-27 13:46:23] 2026-01-27 12:46:03,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:46:23] 2026-01-27 12:46:03,930 | INFO     | **************************************
[2026-01-27 13:46:23] 2026-01-27 12:46:03,930 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:46:23] 2026-01-27 12:46:03,930 | INFO     | **************************************
[2026-01-27 13:46:23] 2026-01-27 12:46:03,930 | INFO     | 
[2026-01-27 13:46:23] 2026-01-27 12:46:03,931 | INFO     | architecture information:
[2026-01-27 13:46:23] 2026-01-27 12:46:03,931 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:46:23] 2026-01-27 12:46:03,941 | INFO     | cat /etc/os-release:
[2026-01-27 13:46:23] NAME="CentOS Linux"
[2026-01-27 13:46:23] VERSION="7 (Core)"
[2026-01-27 13:46:23] ID="centos"
[2026-01-27 13:46:23] ID_LIKE="rhel fedora"
[2026-01-27 13:46:23] VERSION_ID="7"
[2026-01-27 13:46:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:46:23] ANSI_COLOR="0;31"
[2026-01-27 13:46:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:46:23] HOME_URL="https://www.centos.org/"
[2026-01-27 13:46:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:46:23] 
[2026-01-27 13:46:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:46:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:46:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:46:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:46:23] 
[2026-01-27 13:46:23] 2026-01-27 12:46:03,941 | INFO     | **************************************
[2026-01-27 13:46:23] 2026-01-27 12:46:04,426 | WARNING  | process 2268535 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 13:46:23] 2026-01-27 12:46:04,443 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:46:23] 2026-01-27 12:46:04,453 | INFO     | sufficient remaining disk space (336226942976 B)
[2026-01-27 13:46:23] 2026-01-27 12:46:04,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:46:23] 2026-01-27 12:46:04,453 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:46:23] 2026-01-27 12:46:04,453 | INFO     | update_server=False
[2026-01-27 13:46:23] 2026-01-27 12:46:04,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:46:23] 2026-01-27 12:46:04,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:46:23] 2026-01-27 12:46:04,454 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 13:46:23] 2026-01-27 12:46:04,454 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:46:23] 2026-01-27 12:46:04,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:46:23] 2026-01-27 12:46:04,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:46:23] 2026-01-27 12:46:04,478 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:46:23] 2026-01-27 12:46:04,535 | INFO     | number of running child processes to parent process 2268535: 1
[2026-01-27 13:46:23] 2026-01-27 12:46:04,535 | INFO     | maximum number of monitored processes: 6
[2026-01-27 13:46:23] 2026-01-27 12:46:04,535 | INFO     | aborting job monitoring since job object (job id=6984043725) has expired
[2026-01-27 13:46:23] 2026-01-27 12:46:04,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:46:23] 2026-01-27 12:46:04,535 | INFO     | will abort loop
[2026-01-27 13:46:23] 2026-01-27 12:46:04,733 | INFO     | all data control threads have been joined
[2026-01-27 13:46:23] 2026-01-27 12:46:04,929 | INFO     | all payload control threads have been joined
[2026-01-27 13:46:23] 2026-01-27 12:46:05,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:46:23] 2026-01-27 12:46:05,405 | INFO     | all job control threads have been joined
[2026-01-27 13:46:23] 2026-01-27 12:46:05,459 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,459 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,541 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,739 | INFO     | [data] control thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,803 | INFO     | [job] validate thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,810 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,864 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,864 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:05,934 | INFO     | [payload] control thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:06,038 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:06,350 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:06,411 | INFO     | [job] control thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:06,775 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:07,180 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:07,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:46:23] 2026-01-27 12:46:07,785 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:46:23] 2026-01-27 12:46:11,614 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:15,460 | INFO     | job.realtimelogging is not enabled
[2026-01-27 13:46:23] 2026-01-27 12:46:16,466 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:46:23] 2026-01-27 12:46:18,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139889371567936)>', '<ExcThread(monitor, started 139888745764608)>']
[2026-01-27 13:46:23] 2026-01-27 12:46:18,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:46:23] 2026-01-27 12:46:18,525 | INFO     | [monitor] control thread has ended
[2026-01-27 13:46:23] 2026-01-27 12:46:23,187 | INFO     | all workflow threads have been joined
[2026-01-27 13:46:23] 2026-01-27 12:46:23,187 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:46:23] 2026-01-27 12:46:23,187 | INFO     | traces error code: 0
[2026-01-27 13:46:23] 2026-01-27 12:46:23,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:46:23] 2026-01-27 12:46:23,238 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:46:23] 2026-01-27 12:46:23,241 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:46:23] 2026-01-27 12:46:23,243 [wrapper] pilotpid: 2264090
[2026-01-27 13:46:23] 2026-01-27 12:46:23,245 [wrapper] Pilot exit status: 0
[2026-01-27 13:46:23] 2026-01-27 12:46:23,252 [wrapper] pandaids: 6984043725
[2026-01-27 13:46:23] 2026-01-27 12:46:23,272 [wrapper] cleanup supervisor_pilot 2282851 2264091
[2026-01-27 13:46:23] 2026-01-27 12:46:23,275 [wrapper] Test setup, not cleaning
[2026-01-27 13:46:23] 2026-01-27 12:46:23,277 [wrapper] apfmon messages muted
[2026-01-27 13:46:23] 2026-01-27 12:46:23,279 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:46:23] 2026-01-27 12:46:23,282 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:46:23]  *** Error codes and diagnostics ***
[2026-01-27 13:46:23]     "exeErrorCode": 0,
[2026-01-27 13:46:23]     "exeErrorDiag": "",
[2026-01-27 13:46:23]     "pilotErrorCode": 0,
[2026-01-27 13:46:23]     "pilotErrorDiag": "",
[2026-01-27 13:46:23]  *** Listing of results directory ***
[2026-01-27 13:46:23] total 661500
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 13:46:23] -rwx------ 1 boinc boinc     36322 Jan 26 06:15 runpilot2-wrapper.sh
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:16 queuedata.json
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:46:23] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:23 run_atlas
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:23 job.xml
[2026-01-27 13:46:23] -rw-r--r-- 2 boinc boinc 489710000 Jan 27 12:23 EVNT.48317869._000048.pool.root.1
[2026-01-27 13:46:23] -rw-r--r-- 2 boinc boinc    597755 Jan 27 12:23 input.tar.gz
[2026-01-27 13:46:23] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:23 start_atlas.sh
[2026-01-27 13:46:23] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:23 shared
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:23 boinc_setup_complete
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc      6441 Jan 27 12:23 init_data.xml
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:23 boinc_lockfile
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc      2514 Jan 27 12:23 pandaJob.out
[2026-01-27 13:46:23] -rw------- 1 boinc boinc   1002853 Jan 27 12:23 agis_schedconf.cvmfs.json
[2026-01-27 13:46:23] -rw------- 1 boinc boinc   1516246 Jan 27 12:23 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:46:23] -rw------- 1 boinc boinc       422 Jan 27 12:24 workernode_map.json
[2026-01-27 13:46:23] drwx------ 5 boinc boinc      4096 Jan 27 12:24 pilot3
[2026-01-27 13:46:23] -rw------- 1 boinc boinc        95 Jan 27 13:45 pilot_heartbeat.json
[2026-01-27 13:46:23] -rw------- 1 boinc boinc 181764728 Jan 27 13:45 HITS.48317872._002393.pool.root.1
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc       530 Jan 27 13:45 boinc_task_state.xml
[2026-01-27 13:46:23] -rw------- 1 boinc boinc      1021 Jan 27 13:45 memory_monitor_summary.json
[2026-01-27 13:46:23] -rw------- 1 boinc boinc    270065 Jan 27 13:45 log.48317872._002393.job.log.tgz.1
[2026-01-27 13:46:23] -rw------- 1 boinc boinc      6309 Jan 27 13:46 heartbeat.json
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc      8192 Jan 27 13:46 boinc_mmap_file
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc        27 Jan 27 13:46 wrapper_checkpoint.txt
[2026-01-27 13:46:23] -rw------- 1 boinc boinc      5148 Jan 27 13:46 pilotlog.txt
[2026-01-27 13:46:23] -rw------- 1 boinc boinc    720414 Jan 27 13:46 log.48317872._002393.job.log.1
[2026-01-27 13:46:23] -rw------- 1 boinc boinc       357 Jan 27 13:46 output.list
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc       620 Jan 27 13:46 runtime_log
[2026-01-27 13:46:23] -rw------- 1 boinc boinc   1003520 Jan 27 13:46 result.tar.gz
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc      8911 Jan 27 13:46 runtime_log.err
[2026-01-27 13:46:23] -rw------- 1 boinc boinc       660 Jan 27 13:46 YIeNDmu7T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIB9KDmxBOA5n.diag
[2026-01-27 13:46:23] -rw-r--r-- 1 boinc boinc     11262 Jan 27 13:46 stderr.txt
[2026-01-27 13:46:23] HITS file was successfully produced:
[2026-01-27 13:46:23] -rw------- 1 boinc boinc 181764728 Jan 27 13:45 shared/HITS.pool.root.1
[2026-01-27 13:46:23]  *** Contents of shared directory: ***
[2026-01-27 13:46:23] total 657332
[2026-01-27 13:46:23] -rw-r--r-- 2 boinc boinc 489710000 Jan 27 12:23 ATLAS.root_0
[2026-01-27 13:46:23] -rw-r--r-- 2 boinc boinc    597755 Jan 27 12:23 input.tar.gz
[2026-01-27 13:46:23] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:23 start_atlas.sh
[2026-01-27 13:46:23] -rw------- 1 boinc boinc 181764728 Jan 27 13:45 HITS.pool.root.1
[2026-01-27 13:46:23] -rw------- 1 boinc boinc   1003520 Jan 27 13:46 result.tar.gz
13:46:25 (2260033): run_atlas exited; CPU time 14151.606806
13:46:25 (2260033): called boinc_finish(0)

</stderr_txt>
]]>

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