Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:39:30 (988003): wrapper (7.7.26015): starting
11:39:30 (988003): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 11:39:30] Arguments: --nthreads 4
[2026-01-27 11:39:30] Threads: 4
[2026-01-27 11:39:30] Checking for CVMFS
[2026-01-27 11:39:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 11:39:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 11:39:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 11:39:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 11:39:31] 2.9.2.0 3959587 5793 97864 155581 3 50 23093081 36864001 0 130560 0 3547176 99.989 209990 5856 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 11:39:31] CVMFS is ok
[2026-01-27 11:39:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 11:39:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 11:39:31] Further information can be found at the LHC@home message board.
[2026-01-27 11:39:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 11:39:31] Checking for apptainer binary...
[2026-01-27 11:39:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 11:39:31] Running /usr/bin/apptainer --version
[2026-01-27 11:39:31] apptainer version 1.4.1-1.1
[2026-01-27 11:39:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 11:39:31] thA369a
[2026-01-27 11:39:31] apptainer works
[2026-01-27 11:39:31] Set ATHENA_PROC_NUMBER=4
[2026-01-27 11:39:31] Set ATHENA_CORE_NUMBER=4
[2026-01-27 11:39:31] Starting ATLAS job with PandaID=6982527725
[2026-01-27 11:39:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 12:37:08]  *** The last 200 lines of the pilot log: ***
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | job 6982527725 has completed (purged errors)
[2026-01-27 12:37:08] 2026-01-27 11:36:36,682 | INFO     | overall cleanup function is called
[2026-01-27 12:37:08] 2026-01-27 11:36:37,684 | INFO     | --- collectZombieJob: --- 10, [996587]
[2026-01-27 12:37:08] 2026-01-27 11:36:37,684 | INFO     | zombie collector waiting for pid 996587
[2026-01-27 12:37:08] 2026-01-27 11:36:37,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 12:37:08] 2026-01-27 11:36:37,685 | INFO     | collected zombie processes
[2026-01-27 12:37:08] 2026-01-27 11:36:37,685 | INFO     | will attempt to kill all subprocesses of pid=996587
[2026-01-27 12:37:08] 2026-01-27 11:36:37,728 | INFO     | process IDs to be killed: [996587] (in reverse order)
[2026-01-27 12:37:08] 2026-01-27 11:36:37,752 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 12:37:08] 2026-01-27 11:36:37,752 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 12:37:08] 2026-01-27 11:36:37,754 | INFO     | did not find any defunct processes belonging to 996587
[2026-01-27 12:37:08] 2026-01-27 11:36:37,755 | INFO     | did not find any defunct processes belonging to 996587
[2026-01-27 12:37:08] 2026-01-27 11:36:37,755 | INFO     | ready for new job
[2026-01-27 12:37:08] 2026-01-27 11:36:37,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 12:37:08] 2026-01-27 11:36:37,755 | INFO     | **************************************
[2026-01-27 12:37:08] 2026-01-27 11:36:37,756 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 12:37:08] 2026-01-27 11:36:37,756 | INFO     | **************************************
[2026-01-27 12:37:08] 2026-01-27 11:36:37,756 | INFO     | 
[2026-01-27 12:37:08] 2026-01-27 11:36:37,756 | INFO     | architecture information:
[2026-01-27 12:37:08] 2026-01-27 11:36:37,756 | INFO     | executing command: cat /etc/os-release
[2026-01-27 12:37:08] 2026-01-27 11:36:37,765 | INFO     | cat /etc/os-release:
[2026-01-27 12:37:08] NAME="CentOS Linux"
[2026-01-27 12:37:08] VERSION="7 (Core)"
[2026-01-27 12:37:08] ID="centos"
[2026-01-27 12:37:08] ID_LIKE="rhel fedora"
[2026-01-27 12:37:08] VERSION_ID="7"
[2026-01-27 12:37:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 12:37:08] ANSI_COLOR="0;31"
[2026-01-27 12:37:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 12:37:08] HOME_URL="https://www.centos.org/"
[2026-01-27 12:37:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 12:37:08] 
[2026-01-27 12:37:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 12:37:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 12:37:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 12:37:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 12:37:08] 
[2026-01-27 12:37:08] 2026-01-27 11:36:37,765 | INFO     | **************************************
[2026-01-27 12:37:08] 2026-01-27 11:36:38,267 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 12:37:08] 2026-01-27 11:36:38,279 | INFO     | sufficient remaining disk space (234991124480 B)
[2026-01-27 12:37:08] 2026-01-27 11:36:38,279 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 12:37:08] 2026-01-27 11:36:38,279 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 12:37:08] 2026-01-27 11:36:38,279 | INFO     | update_server=False
[2026-01-27 12:37:08] 2026-01-27 11:36:38,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 12:37:08] 2026-01-27 11:36:38,280 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:37:08] 2026-01-27 11:36:38,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 12:37:08] 2026-01-27 11:36:38,364 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 12:37:08] 2026-01-27 11:36:38,364 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 12:37:08] 2026-01-27 11:36:38,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:37:08] 2026-01-27 11:36:38,364 | INFO     | will abort loop
[2026-01-27 12:37:08] 2026-01-27 11:36:38,837 | INFO     | all payload control threads have been joined
[2026-01-27 12:37:08] 2026-01-27 11:36:38,999 | INFO     | all data control threads have been joined
[2026-01-27 12:37:08] 2026-01-27 11:36:39,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 12:37:08] 2026-01-27 11:36:39,285 | INFO     | [job] queue monitor thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,285 | INFO     | [job] retrieve thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,331 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,370 | INFO     | [job] job monitor thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,416 | INFO     | [data] copytool_in thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,492 | INFO     | [payload] failed_post thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,659 | INFO     | all job control threads have been joined
[2026-01-27 12:37:08] 2026-01-27 11:36:39,843 | INFO     | [payload] control thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:39,999 | INFO     | [payload] validate_post thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:40,004 | INFO     | [data] control thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:40,036 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:40,592 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:40,665 | INFO     | [job] control thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:40,709 | INFO     | [job] validate thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:40,776 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:41,180 | INFO     | [data] copytool_out thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:42,287 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 12:37:08] 2026-01-27 11:36:44,722 | INFO     | [monitor] cgroup control has ended
[2026-01-27 12:37:08] 2026-01-27 11:36:45,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444144682816)>', '<ExcThread(monitor, started 140443148875520)>']
[2026-01-27 12:37:08] 2026-01-27 11:36:50,660 | INFO     | all workflow threads have been joined
[2026-01-27 12:37:08] 2026-01-27 11:36:50,660 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 12:37:08] 2026-01-27 11:36:50,660 | INFO     | traces error code: 0
[2026-01-27 12:37:08] 2026-01-27 11:36:50,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 12:37:08] 2026-01-27 11:37:07,930 | INFO     | PID=992095 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 12:37:08] 2026-01-27 11:37:07,931 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 12:37:08] 2026-01-27 11:37:07,931 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 12:37:08] 2026-01-27 11:37:07,931 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 12:37:08] 2026-01-27 11:37:07,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 12:37:08] 2026-01-27 11:37:07,931 | INFO     | [monitor] control thread has ended
[2026-01-27 12:37:08] 2026-01-27 11:37:07,981 [wrapper] ==== pilot stdout END ====
[2026-01-27 12:37:08] 2026-01-27 11:37:07,983 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 12:37:08] 2026-01-27 11:37:07,986 [wrapper] pilotpid: 992095
[2026-01-27 12:37:08] 2026-01-27 11:37:07,988 [wrapper] Pilot exit status: 0
[2026-01-27 12:37:08] 2026-01-27 11:37:07,995 [wrapper] pandaids: 6982527725
[2026-01-27 12:37:08] 2026-01-27 11:37:08,012 [wrapper] cleanup supervisor_pilot 1001658 992096
[2026-01-27 12:37:08] 2026-01-27 11:37:08,014 [wrapper] Test setup, not cleaning
[2026-01-27 12:37:08] 2026-01-27 11:37:08,016 [wrapper] apfmon messages muted
[2026-01-27 12:37:08] 2026-01-27 11:37:08,019 [wrapper] ==== wrapper stdout END ====
[2026-01-27 12:37:08] 2026-01-27 11:37:08,021 [wrapper] ==== wrapper stderr END ====
[2026-01-27 12:37:08]  *** Error codes and diagnostics ***
[2026-01-27 12:37:08]     "exeErrorCode": 0,
[2026-01-27 12:37:08]     "exeErrorDiag": "",
[2026-01-27 12:37:08]     "pilotErrorCode": 0,
[2026-01-27 12:37:08]     "pilotErrorDiag": "",
[2026-01-27 12:37:08]  *** Listing of results directory ***
[2026-01-27 12:37:08] total 666000
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc    584422 Jan 25 06:13 pilot3.tar.gz
[2026-01-27 12:37:08] -rwx------ 1 boinc boinc     36322 Jan 25 06:14 runpilot2-wrapper.sh
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc      5111 Jan 25 06:15 queuedata.json
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc       100 Jan 27 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 12:37:08] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 11:39 run_atlas
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc       105 Jan 27 11:39 job.xml
[2026-01-27 12:37:08] -rw-r--r-- 2 boinc boinc 496221821 Jan 27 11:39 EVNT.48310824._000091.pool.root.1
[2026-01-27 12:37:08] drwxrwx--x 2 boinc boinc      4096 Jan 27 11:39 shared
[2026-01-27 12:37:08] -rw-r--r-- 2 boinc boinc    597758 Jan 27 11:39 input.tar.gz
[2026-01-27 12:37:08] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:39 start_atlas.sh
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:39 boinc_setup_complete
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc      6443 Jan 27 11:39 init_data.xml
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:39 boinc_lockfile
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc      2524 Jan 27 11:39 pandaJob.out
[2026-01-27 12:37:08] -rw------- 1 boinc boinc   1002845 Jan 27 11:39 agis_schedconf.cvmfs.json
[2026-01-27 12:37:08] -rw------- 1 boinc boinc   1516246 Jan 27 11:39 agis_ddmendpoints.agis.ALL.json
[2026-01-27 12:37:08] -rw------- 1 boinc boinc       424 Jan 27 11:39 workernode_map.json
[2026-01-27 12:37:08] drwx------ 5 boinc boinc      4096 Jan 27 11:39 pilot3
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc       530 Jan 27 12:36 boinc_task_state.xml
[2026-01-27 12:37:08] -rw------- 1 boinc boinc 180281108 Jan 27 12:36 HITS.48310826._008626.pool.root.1
[2026-01-27 12:37:08] -rw------- 1 boinc boinc      1012 Jan 27 12:36 memory_monitor_summary.json
[2026-01-27 12:37:08] -rw------- 1 boinc boinc    268469 Jan 27 12:36 log.48310826._008626.job.log.tgz.1
[2026-01-27 12:37:08] -rw------- 1 boinc boinc      6302 Jan 27 12:36 heartbeat.json
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc        27 Jan 27 12:36 wrapper_checkpoint.txt
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc      8192 Jan 27 12:36 boinc_mmap_file
[2026-01-27 12:37:08] -rw------- 1 boinc boinc       746 Jan 27 12:37 pilotlog.txt
[2026-01-27 12:37:08] -rw------- 1 boinc boinc        95 Jan 27 12:37 pilot_heartbeat.json
[2026-01-27 12:37:08] -rw------- 1 boinc boinc    515274 Jan 27 12:37 log.48310826._008626.job.log.1
[2026-01-27 12:37:08] -rw------- 1 boinc boinc       357 Jan 27 12:37 output.list
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc       620 Jan 27 12:37 runtime_log
[2026-01-27 12:37:08] -rw------- 1 boinc boinc    798720 Jan 27 12:37 result.tar.gz
[2026-01-27 12:37:08] -rw------- 1 boinc boinc       658 Jan 27 12:37 w5ONDm4c738nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxk6KDmuxUZsm.diag
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc      8901 Jan 27 12:37 runtime_log.err
[2026-01-27 12:37:08] -rw-r--r-- 1 boinc boinc     11738 Jan 27 12:37 stderr.txt
[2026-01-27 12:37:08] HITS file was successfully produced:
[2026-01-27 12:37:08] -rw------- 1 boinc boinc 180281108 Jan 27 12:36 shared/HITS.pool.root.1
[2026-01-27 12:37:08]  *** Contents of shared directory: ***
[2026-01-27 12:37:08] total 662036
[2026-01-27 12:37:08] -rw-r--r-- 2 boinc boinc 496221821 Jan 27 11:39 ATLAS.root_0
[2026-01-27 12:37:08] -rw-r--r-- 2 boinc boinc    597758 Jan 27 11:39 input.tar.gz
[2026-01-27 12:37:08] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:39 start_atlas.sh
[2026-01-27 12:37:08] -rw------- 1 boinc boinc 180281108 Jan 27 12:36 HITS.pool.root.1
[2026-01-27 12:37:08] -rw------- 1 boinc boinc    798720 Jan 27 12:37 result.tar.gz
12:37:09 (988003): run_atlas exited; CPU time 12756.290659
12:37:09 (988003): called boinc_finish(0)

</stderr_txt>
]]>

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