Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:34:52 (1501702): wrapper (7.7.26015): starting
19:34:52 (1501702): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 19:34:52] Arguments: --nthreads 12
[2026-01-27 19:34:52] Threads: 12
[2026-01-27 19:34:52] Checking for CVMFS
[2026-01-27 19:34:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 19:34:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 19:34:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 19:34:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 19:34:58] 2.13.1.0 2787 3120 71940 155597 1 50 2898571 4096000 1824 130560 0 4445452 99.954 345804 1188 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-27 19:34:58] CVMFS is ok
[2026-01-27 19:34:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 19:34:58] Checking for apptainer binary...
[2026-01-27 19:34:58] apptainer is not installed, using version from CVMFS
[2026-01-27 19:34:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 19:35:00] ryzen7
[2026-01-27 19:35:00] apptainer works
[2026-01-27 19:35:00] Set ATHENA_PROC_NUMBER=12
[2026-01-27 19:35:00] Set ATHENA_CORE_NUMBER=12
[2026-01-27 19:35:00] Starting ATLAS job with PandaID=6983771361
[2026-01-27 19:35:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 21:09:38]  *** The last 200 lines of the pilot log: ***
[2026-01-27 21:09:38]  protocol_id=None
[2026-01-27 21:09:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 21:09:38]  replicas=None
[2026-01-27 21:09:38]  scope=mc23_13p6TeV
[2026-01-27 21:09:38]  status=None
[2026-01-27 21:09:38]  status_code=0
[2026-01-27 21:09:38]  storage_token=
[2026-01-27 21:09:38]  surl=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/log.48298567._000558.job.log.tgz.1
[2026-01-27 21:09:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/a9/log.48298567._000558.job.log.tgz.1
[2026-01-27 21:09:38]  workdir=None
[2026-01-27 21:09:38] ]
[2026-01-27 21:09:38] 2026-01-27 21:08:32,165 | INFO     | transferring file log.48298567._000558.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/log.48298567._000558.job.log.tgz.1 t
[2026-01-27 21:09:38] 2026-01-27 21:08:32,165 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/log.48298567._000558.job.log.tgz.1 /opt/boinc/instance_home
[2026-01-27 21:09:38] 2026-01-27 21:08:32,172 | INFO     | adding to output.list: log.48298567._000558.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/a9/log.48298567._000558.job.log.tg
[2026-01-27 21:09:38] 2026-01-27 21:08:32,173 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 21:09:38] 2026-01-27 21:08:32,173 | INFO     | summary of transferred files:
[2026-01-27 21:09:38] 2026-01-27 21:08:32,173 | INFO     |  -- lfn=log.48298567._000558.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 21:09:38] 2026-01-27 21:08:32,173 | INFO     | stage-out finished correctly
[2026-01-27 21:09:38] 2026-01-27 21:08:32,199 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 21:09:38] 2026-01-27 21:08:33,230 | INFO     | time since job start (5468s) is within the limit (349056.0s)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,944 | INFO     | job 6983771361 has state=finished
[2026-01-27 21:09:38] 2026-01-27 21:08:34,944 | INFO     | preparing for final server update for job 6983771361 in state='finished'
[2026-01-27 21:09:38] 2026-01-27 21:08:34,944 | INFO     | reading metadata from: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/jobReport.json
[2026-01-27 21:09:38] 2026-01-27 21:08:34,945 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31417/slots/1/workernode_map.json
[2026-01-27 21:09:38] 2026-01-27 21:08:34,945 | INFO     | this job has now completed (state=finished)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,945 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,945 | INFO     | log transfer has been attempted: DONE
[2026-01-27 21:09:38] 2026-01-27 21:08:34,946 | INFO     | job 6983771361 has finished - writing final server update
[2026-01-27 21:09:38] 2026-01-27 21:08:34,946 | INFO     | total number of processed events: 400 (read)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,967 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,967 | INFO     | extracted standard info from prmon json
[2026-01-27 21:09:38] 2026-01-27 21:08:34,967 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 21:09:38] 2026-01-27 21:08:34,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 21:09:38] 2026-01-27 21:08:34,967 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 21:09:38] 2026-01-27 21:08:34,967 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 21:09:38] 2026-01-27 21:08:34,968 | INFO     | fitting pss+swap vs Time
[2026-01-27 21:09:38] 2026-01-27 21:08:34,968 | INFO     | sum of square deviations: 164765880.0
[2026-01-27 21:09:38] 2026-01-27 21:08:34,968 | INFO     | sum of deviations: -5391986054.0
[2026-01-27 21:09:38] 2026-01-27 21:08:34,968 | INFO     | mean x: 1769545487.0
[2026-01-27 21:09:38] 2026-01-27 21:08:34,968 | INFO     | mean y: 2740852.3703703703
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | intersect: 57911359965.88245
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | chi2: 0.029832216161594923
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | current memory leak: -32.73 B/s (using 81 data points, chi2=0.03)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | could have reported an average CPU frequency of 4301 MHz (7 samples)
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | ..............................
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . Timing measurements:
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . get job = 0 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . initial setup = 49 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . payload setup = 56 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . stage-in = 0 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . payload execution = 5404 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . stage-out = 0 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | . log creation = 0 s
[2026-01-27 21:09:38] 2026-01-27 21:08:34,969 | INFO     | ..............................
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | 
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | job summary report
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | --------------------------------------------------
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | PanDA job id: 6983771361
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | task id: 48298567
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | errors: (none)
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | pilot state: finished 
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | transexitcode: 0
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | exeerrorcode: 0
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | exeerrordiag: 
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | exitcode: 0
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | exitmsg: OK
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | cpuconsumptiontime: 29469 s
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | nevents: 400
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | neventsw: 0
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | pid: 1510295
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | pgrp: 1510295
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | corecount: 12
[2026-01-27 21:09:38] 2026-01-27 21:08:35,127 | INFO     | event service: False
[2026-01-27 21:09:38] 2026-01-27 21:08:35,128 | INFO     | sizes: {0: 2283955, 1: 2284416, 5464: 2310936, 5465: 2310935, 5466: 2320091, 5469: 2320229}
[2026-01-27 21:09:38] 2026-01-27 21:08:35,128 | INFO     | --------------------------------------------------
[2026-01-27 21:09:38] 2026-01-27 21:08:35,128 | INFO     | 
[2026-01-27 21:09:38] 2026-01-27 21:08:35,128 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-27 21:09:38] 2026-01-27 21:08:35,136 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | job 6983771361 has completed (purged errors)
[2026-01-27 21:09:38] 2026-01-27 21:08:35,137 | INFO     | overall cleanup function is called
[2026-01-27 21:09:38] 2026-01-27 21:08:36,040 | WARNING  | process 1510295 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 21:09:38] 2026-01-27 21:08:36,067 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 21:09:38] 2026-01-27 21:08:36,067 | INFO     | skipping file size check of payload stdout file (/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/payload.stdout) since it has not been created
[2026-01-27 21:09:38] 2026-01-27 21:08:36,067 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-27 21:09:38] 2026-01-27 21:08:36,074 | INFO     | sufficient remaining disk space (149918056448 B)
[2026-01-27 21:09:38] 2026-01-27 21:08:36,074 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 21:09:38] 2026-01-27 21:08:36,074 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771361/HITS.48298567._000558.pool.root.1 since it does n
[2026-01-27 21:09:38] 2026-01-27 21:08:36,112 | INFO     | number of running child processes to parent process 1510295: 1
[2026-01-27 21:09:38] 2026-01-27 21:08:36,112 | INFO     | maximum number of monitored processes: 6
[2026-01-27 21:09:38] 2026-01-27 21:08:36,112 | INFO     | aborting job monitoring since job object (job id=6983771361) has expired
[2026-01-27 21:09:38] 2026-01-27 21:08:36,144 | INFO     | --- collectZombieJob: --- 10, [1510295]
[2026-01-27 21:09:38] 2026-01-27 21:08:36,144 | INFO     | zombie collector waiting for pid 1510295
[2026-01-27 21:09:38] 2026-01-27 21:08:36,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 21:09:38] 2026-01-27 21:08:36,144 | INFO     | collected zombie processes
[2026-01-27 21:09:38] 2026-01-27 21:08:36,144 | INFO     | will attempt to kill all subprocesses of pid=1510295
[2026-01-27 21:09:38] 2026-01-27 21:08:36,188 | INFO     | process IDs to be killed: [1510295] (in reverse order)
[2026-01-27 21:09:38] 2026-01-27 21:08:36,210 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 21:09:38] 2026-01-27 21:08:36,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 21:09:38] 2026-01-27 21:08:36,211 | INFO     | did not find any defunct processes belonging to 1510295
[2026-01-27 21:09:38] 2026-01-27 21:08:36,212 | INFO     | did not find any defunct processes belonging to 1510295
[2026-01-27 21:09:38] 2026-01-27 21:08:36,212 | INFO     | ready for new job
[2026-01-27 21:09:38] 2026-01-27 21:08:36,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 21:09:38] 2026-01-27 21:08:36,213 | INFO     | **************************************
[2026-01-27 21:09:38] 2026-01-27 21:08:36,213 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 21:09:38] 2026-01-27 21:08:36,213 | INFO     | **************************************
[2026-01-27 21:09:38] 2026-01-27 21:08:36,213 | INFO     | 
[2026-01-27 21:09:38] 2026-01-27 21:08:36,230 | INFO     | architecture information:
[2026-01-27 21:09:38] 2026-01-27 21:08:36,230 | INFO     | executing command: cat /etc/os-release
[2026-01-27 21:09:38] 2026-01-27 21:08:36,235 | INFO     | cat /etc/os-release:
[2026-01-27 21:09:38] NAME="CentOS Linux"
[2026-01-27 21:09:38] VERSION="7 (Core)"
[2026-01-27 21:09:38] ID="centos"
[2026-01-27 21:09:38] ID_LIKE="rhel fedora"
[2026-01-27 21:09:38] VERSION_ID="7"
[2026-01-27 21:09:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 21:09:38] ANSI_COLOR="0;31"
[2026-01-27 21:09:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 21:09:38] HOME_URL="https://www.centos.org/"
[2026-01-27 21:09:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 21:09:38] 
[2026-01-27 21:09:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 21:09:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 21:09:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 21:09:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 21:09:38] 
[2026-01-27 21:09:38] 2026-01-27 21:08:36,235 | INFO     | **************************************
[2026-01-27 21:09:38] 2026-01-27 21:08:36,738 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-27 21:09:38] 2026-01-27 21:08:36,744 | INFO     | sufficient remaining disk space (149919105024 B)
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | INFO     | update_server=False
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | INFO     | will abort loop
[2026-01-27 21:09:38] 2026-01-27 21:08:36,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:09:38] 2026-01-27 21:08:37,127 | INFO     | all data control threads have been joined
[2026-01-27 21:09:38] 2026-01-27 21:08:37,466 | INFO     | all payload control threads have been joined
[2026-01-27 21:09:38] 2026-01-27 21:08:37,502 | INFO     | all job control threads have been joined
[2026-01-27 21:09:38] 2026-01-27 21:08:37,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 21:09:38] 2026-01-27 21:08:37,750 | INFO     | [job] retrieve thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:37,750 | INFO     | [job] job monitor thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:37,750 | INFO     | [job] queue monitor thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:37,954 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,011 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,132 | INFO     | [data] control thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 21:09:38] 2026-01-27 21:08:38,358 | INFO     | [payload] validate_post thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,472 | INFO     | [payload] control thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,507 | INFO     | [job] control thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,629 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:38,946 | INFO     | [data] copytool_in thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:39,122 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:39,183 | INFO     | [job] validate thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:39,232 | INFO     | [payload] failed_post thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:39,712 | INFO     | [data] copytool_out thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:08:42,239 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 21:09:38] 2026-01-27 21:09:05,289 | INFO     | 5520s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-27 21:09:38] 2026-01-27 21:09:06,348 | INFO     | PID=1505806 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 21:09:38] 2026-01-27 21:09:06,348 | INFO     | .. there are 3 such processes running
[2026-01-27 21:09:38] 2026-01-27 21:09:06,348 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 21:09:38] 2026-01-27 21:09:06,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 21:09:38] 2026-01-27 21:09:06,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 21:09:38] 2026-01-27 21:09:33,195 | INFO     | [monitor] cgroup control has ended
[2026-01-27 21:09:38] 2026-01-27 21:09:33,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349812475712)>', '<ExcThread(monitor, started 140349389399808)>']
[2026-01-27 21:09:38] 2026-01-27 21:09:34,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 21:09:38] 2026-01-27 21:09:34,448 | INFO     | [monitor] control thread has ended
[2026-01-27 21:09:38] 2026-01-27 21:09:38,874 | INFO     | all workflow threads have been joined
[2026-01-27 21:09:38] 2026-01-27 21:09:38,874 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 21:09:38] 2026-01-27 21:09:38,874 | INFO     | traces error code: 0
[2026-01-27 21:09:38] 2026-01-27 21:09:38,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 21:09:38] 2026-01-27 21:09:38,925 [wrapper] ==== pilot stdout END ====
[2026-01-27 21:09:38] 2026-01-27 21:09:38,927 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 21:09:38] 2026-01-27 21:09:38,928 [wrapper] pilotpid: 1505806
[2026-01-27 21:09:38] 2026-01-27 21:09:38,929 [wrapper] Pilot exit status: 0
[2026-01-27 21:09:38] 2026-01-27 21:09:38,935 [wrapper] pandaids: 6983771361
[2026-01-27 21:09:38] 2026-01-27 21:09:38,951 [wrapper] cleanup supervisor_pilot 1541626 1505807
[2026-01-27 21:09:38] 2026-01-27 21:09:38,952 [wrapper] Test setup, not cleaning
[2026-01-27 21:09:38] 2026-01-27 21:09:38,953 [wrapper] apfmon messages muted
[2026-01-27 21:09:38] 2026-01-27 21:09:38,954 [wrapper] ==== wrapper stdout END ====
[2026-01-27 21:09:38] 2026-01-27 21:09:38,955 [wrapper] ==== wrapper stderr END ====
[2026-01-27 21:09:38]  *** Error codes and diagnostics ***
[2026-01-27 21:09:38]     "exeErrorCode": 0,
[2026-01-27 21:09:38]     "exeErrorDiag": "",
[2026-01-27 21:09:38]     "pilotErrorCode": 0,
[2026-01-27 21:09:38]     "pilotErrorDiag": "",
[2026-01-27 21:09:38]  *** Listing of results directory ***
[2026-01-27 21:09:38] total 418144
[2026-01-27 21:09:38] -rw-r--r-- 1 boinc boinc    584422 Jan 26 01:12 pilot3.tar.gz
[2026-01-27 21:09:38] -rwx------ 1 boinc boinc     36322 Jan 26 01:15 runpilot2-wrapper.sh
[2026-01-27 21:09:38] -rw-r--r-- 1 boinc boinc      5111 Jan 26 01:18 queuedata.json
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc       100 Jan 27 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 21:09:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 19:34 run_atlas
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc       105 Jan 27 19:34 job.xml
[2026-01-27 21:09:38] -rw-r--r-- 2 boinc boinc 248996819 Jan 27 19:34 EVNT.48298565._000023.pool.root.1
[2026-01-27 21:09:38] -rw-r--r-- 2 boinc boinc     15845 Jan 27 19:34 start_atlas.sh
[2026-01-27 21:09:38] drwxrwx--x 2 boinc boinc      4096 Jan 27 19:34 shared
[2026-01-27 21:09:38] -rw-r--r-- 2 boinc boinc    597776 Jan 27 19:34 input.tar.gz
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc      6935 Jan 27 19:34 init_data.xml
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc         0 Jan 27 19:34 boinc_setup_complete
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc         0 Jan 27 19:34 boinc_lockfile
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc      2614 Jan 27 19:35 pandaJob.out
[2026-01-27 21:09:38] -rw------- 1 boinc boinc   1005244 Jan 27 19:36 agis_schedconf.cvmfs.json
[2026-01-27 21:09:38] -rw------- 1 boinc boinc   1516246 Jan 27 19:36 agis_ddmendpoints.agis.ALL.json
[2026-01-27 21:09:38] -rw------- 1 boinc boinc       419 Jan 27 19:37 workernode_map.json
[2026-01-27 21:09:38] drwx------ 5 boinc boinc      4096 Jan 27 19:37 pilot3
[2026-01-27 21:09:38] -rw------- 1 boinc boinc 172813432 Jan 27 21:08 HITS.48298567._000558.pool.root.1
[2026-01-27 21:09:38] -rw------- 1 boinc boinc      1018 Jan 27 21:08 memory_monitor_summary.json
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc       529 Jan 27 21:08 boinc_task_state.xml
[2026-01-27 21:09:38] -rw------- 1 boinc boinc    391103 Jan 27 21:08 log.48298567._000558.job.log.tgz.1
[2026-01-27 21:09:38] -rw------- 1 boinc boinc      6275 Jan 27 21:08 heartbeat.json
[2026-01-27 21:09:38] -rw------- 1 boinc boinc        95 Jan 27 21:09 pilot_heartbeat.json
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc      8192 Jan 27 21:09 boinc_mmap_file
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc        27 Jan 27 21:09 wrapper_checkpoint.txt
[2026-01-27 21:09:38] -rw------- 1 boinc boinc      4960 Jan 27 21:09 pilotlog.txt
[2026-01-27 21:09:38] -rw------- 1 boinc boinc    824994 Jan 27 21:09 log.48298567._000558.job.log.1
[2026-01-27 21:09:38] -rw------- 1 boinc boinc       357 Jan 27 21:09 output.list
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc       620 Jan 27 21:09 runtime_log
[2026-01-27 21:09:38] -rw------- 1 boinc boinc   1228800 Jan 27 21:09 result.tar.gz
[2026-01-27 21:09:38] -rw------- 1 boinc boinc       648 Jan 27 21:09 SW2LDmDNQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPn8KDm0Nqwdm.diag
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc      9156 Jan 27 21:09 runtime_log.err
[2026-01-27 21:09:38] -rw-rw-r-- 1 boinc boinc     21909 Jan 27 21:09 stderr.txt
[2026-01-27 21:09:38] HITS file was successfully produced:
[2026-01-27 21:09:38] -rw------- 1 boinc boinc 172813432 Jan 27 21:08 shared/HITS.pool.root.1
[2026-01-27 21:09:38]  *** Contents of shared directory: ***
[2026-01-27 21:09:38] total 413736
[2026-01-27 21:09:38] -rw-r--r-- 2 boinc boinc 248996819 Jan 27 19:34 ATLAS.root_0
[2026-01-27 21:09:38] -rw-r--r-- 2 boinc boinc     15845 Jan 27 19:34 start_atlas.sh
[2026-01-27 21:09:38] -rw-r--r-- 2 boinc boinc    597776 Jan 27 19:34 input.tar.gz
[2026-01-27 21:09:38] -rw------- 1 boinc boinc 172813432 Jan 27 21:08 HITS.pool.root.1
[2026-01-27 21:09:38] -rw------- 1 boinc boinc   1228800 Jan 27 21:09 result.tar.gz
21:09:40 (1501702): run_atlas exited; CPU time 29494.776213
21:09:40 (1501702): called boinc_finish(0)

</stderr_txt>
]]>

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