Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:54:14 (26992): wrapper (7.7.26015): starting
08:54:14 (26992): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 08:54:14] Arguments: --nthreads 8
[2026-01-27 08:54:14] Threads: 8
[2026-01-27 08:54:14] Checking for CVMFS
[2026-01-27 08:54:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 08:54:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 08:54:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 08:54:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 08:54:18] 2.11.2.0 5634 61038 134496 155577 0 54 12747719 25165825 899 130560 0 19787833 99.818 15289264 3100 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 08:54:18] CVMFS is ok
[2026-01-27 08:54:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 08:54:18] Checking for apptainer binary...
[2026-01-27 08:54:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 08:54:18] Running /usr/bin/apptainer --version
[2026-01-27 08:54:18] apptainer version 1.3.2-1.el7
[2026-01-27 08:54:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 08:54:44] cg-vwn416.simple-grid.lan
[2026-01-27 08:54:44] apptainer works
[2026-01-27 08:54:44] Set ATHENA_PROC_NUMBER=8
[2026-01-27 08:54:44] Set ATHENA_CORE_NUMBER=8
[2026-01-27 08:54:44] Starting ATLAS job with PandaID=6983305223
[2026-01-27 08:54:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:40:12]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:40:12] 2026-01-27 12:39:18,713 | INFO     | log transfer has been attempted: DONE
[2026-01-27 13:40:12] 2026-01-27 12:39:18,713 | INFO     | job 6983305223 has finished - writing final server update
[2026-01-27 13:40:12] 2026-01-27 12:39:18,714 | INFO     | total number of processed events: 400 (read)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,716 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6983305223/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,716 | INFO     | extracted standard info from prmon json
[2026-01-27 13:40:12] 2026-01-27 12:39:18,717 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 13:40:12] 2026-01-27 12:39:18,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 13:40:12] 2026-01-27 12:39:18,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 13:40:12] 2026-01-27 12:39:18,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 13:40:12] 2026-01-27 12:39:18,723 | INFO     | fitting pss+swap vs Time
[2026-01-27 13:40:12] 2026-01-27 12:39:18,724 | INFO     | sum of square deviations: 6035722470.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,726 | INFO     | sum of deviations: 107974029049.99997
[2026-01-27 13:40:12] 2026-01-27 12:39:18,727 | INFO     | mean x: 1769509367.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,727 | INFO     | mean y: 2430044.8289962825
[2026-01-27 13:40:12] 2026-01-27 12:39:18,727 | INFO     | intersect: -31652613199.183025
[2026-01-27 13:40:12] 2026-01-27 12:39:18,728 | INFO     | chi2: 9.733849524929582
[2026-01-27 13:40:12] 2026-01-27 12:39:18,728 | INFO     | sum of square deviations: 5705372090.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,731 | INFO     | sum of deviations: 142390162254.99997
[2026-01-27 13:40:12] 2026-01-27 12:39:18,734 | INFO     | mean x: 1769509214.5
[2026-01-27 13:40:12] 2026-01-27 12:39:18,734 | INFO     | mean y: 2445743.507575758
[2026-01-27 13:40:12] 2026-01-27 12:39:18,734 | INFO     | intersect: -44159565110.43701
[2026-01-27 13:40:12] 2026-01-27 12:39:18,735 | INFO     | chi2: 8.226188587762023
[2026-01-27 13:40:12] 2026-01-27 12:39:18,735 | INFO     | current chi2=8.226188587762023 (change=15.488845736789486 %)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,735 | INFO     | right removable region: 263
[2026-01-27 13:40:12] 2026-01-27 12:39:18,736 | INFO     | sum of square deviations: 5705372090.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,738 | INFO     | sum of deviations: 13929964148.000008
[2026-01-27 13:40:12] 2026-01-27 12:39:18,738 | INFO     | mean x: 1769509519.5
[2026-01-27 13:40:12] 2026-01-27 12:39:18,739 | INFO     | mean y: 2473435.2954545454
[2026-01-27 13:40:12] 2026-01-27 12:39:18,739 | INFO     | intersect: -4317876539.666428
[2026-01-27 13:40:12] 2026-01-27 12:39:18,739 | INFO     | chi2: 4.6900711006764215
[2026-01-27 13:40:12] 2026-01-27 12:39:18,739 | INFO     | current chi2=4.6900711006764215 (change=51.816893319908274 %)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,740 | INFO     | sum of square deviations: 5387301010.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,742 | INFO     | sum of deviations: -58027716440.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,743 | INFO     | mean x: 1769509672.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,743 | INFO     | mean y: 2507904.498069498
[2026-01-27 13:40:12] 2026-01-27 12:39:18,743 | INFO     | intersect: 19062256987.398006
[2026-01-27 13:40:12] 2026-01-27 12:39:18,743 | INFO     | chi2: 1.933747560154706
[2026-01-27 13:40:12] 2026-01-27 12:39:18,744 | INFO     | current chi2=1.933747560154706 (change=58.769333798035326 %)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,744 | INFO     | sum of square deviations: 5081276667.5
[2026-01-27 13:40:12] 2026-01-27 12:39:18,746 | INFO     | sum of deviations: -72973477964.00003
[2026-01-27 13:40:12] 2026-01-27 12:39:18,747 | INFO     | mean x: 1769509824.5
[2026-01-27 13:40:12] 2026-01-27 12:39:18,747 | INFO     | mean y: 2515305.8661417323
[2026-01-27 13:40:12] 2026-01-27 12:39:18,747 | INFO     | intersect: 25414885982.53769
[2026-01-27 13:40:12] 2026-01-27 12:39:18,747 | INFO     | chi2: 1.750739323354094
[2026-01-27 13:40:12] 2026-01-27 12:39:18,748 | INFO     | current chi2=1.750739323354094 (change=9.463915589166707 %)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,748 | INFO     | left removable region: 30
[2026-01-27 13:40:12] 2026-01-27 12:39:18,748 | INFO     | sum of square deviations: 3922276332.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,750 | INFO     | sum of deviations: -29423062568.000004
[2026-01-27 13:40:12] 2026-01-27 12:39:18,750 | INFO     | mean x: 1769510099.0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,751 | INFO     | mean y: 2529421.506437768
[2026-01-27 13:40:12] 2026-01-27 12:39:18,751 | INFO     | intersect: 13276557549.717594
[2026-01-27 13:40:12] 2026-01-27 12:39:18,751 | INFO     | chi2: 0.06773131283301403
[2026-01-27 13:40:12] 2026-01-27 12:39:18,751 | INFO     | current memory leak: -7.50 B/s (using 233 data points, chi2=0.07)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,752 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,752 | INFO     | ..............................
[2026-01-27 13:40:12] 2026-01-27 12:39:18,752 | INFO     | . Timing measurements:
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . get job = 0 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . initial setup = 124 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . payload setup = 155 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . stage-in = 0 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . payload execution = 16480 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . stage-out = 4 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | . log creation = 1 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,753 | INFO     | ..............................
[2026-01-27 13:40:12] 2026-01-27 12:39:18,909 | INFO     | 
[2026-01-27 13:40:12] 2026-01-27 12:39:18,909 | INFO     | job summary report
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | --------------------------------------------------
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | PanDA job id: 6983305223
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | task id: 48318042
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | errors: (none)
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | pilot state: finished 
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | transexitcode: 0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | exeerrorcode: 0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,910 | INFO     | exeerrordiag: 
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | exitcode: 0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | exitmsg: OK
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | cpuconsumptiontime: 61993 s
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | nevents: 400
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | neventsw: 0
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | pid: 3016
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | pgrp: 3016
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | corecount: 8
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | event service: False
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | sizes: {0: 2283161, 1: 2283846, 2: 2284307, 3: 2284307, 13: 2284335, 16640: 2316324, 16646: 2325322, 16650: 2325378, 16653: 2325572}
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | --------------------------------------------------
[2026-01-27 13:40:12] 2026-01-27 12:39:18,911 | INFO     | 
[2026-01-27 13:40:12] 2026-01-27 12:39:18,912 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-27 13:40:12] 2026-01-27 12:39:19,427 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,427 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,427 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,427 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:40:12] 2026-01-27 12:39:19,429 | INFO     | job 6983305223 has completed (purged errors)
[2026-01-27 13:40:12] 2026-01-27 12:39:19,430 | INFO     | overall cleanup function is called
[2026-01-27 13:40:12] 2026-01-27 12:39:20,439 | INFO     | --- collectZombieJob: --- 10, [3016]
[2026-01-27 13:40:12] 2026-01-27 12:39:20,439 | INFO     | zombie collector waiting for pid 3016
[2026-01-27 13:40:12] 2026-01-27 12:39:20,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:40:12] 2026-01-27 12:39:20,440 | INFO     | collected zombie processes
[2026-01-27 13:40:12] 2026-01-27 12:39:20,440 | INFO     | will attempt to kill all subprocesses of pid=3016
[2026-01-27 13:40:12] 2026-01-27 12:39:20,544 | INFO     | process IDs to be killed: [3016] (in reverse order)
[2026-01-27 13:40:12] 2026-01-27 12:39:21,216 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:40:12] 2026-01-27 12:39:21,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:40:12] 2026-01-27 12:39:21,218 | INFO     | did not find any defunct processes belonging to 3016
[2026-01-27 13:40:12] 2026-01-27 12:39:21,220 | INFO     | did not find any defunct processes belonging to 3016
[2026-01-27 13:40:12] 2026-01-27 12:39:21,220 | INFO     | ready for new job
[2026-01-27 13:40:12] 2026-01-27 12:39:21,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:40:12] 2026-01-27 12:39:21,223 | INFO     | **************************************
[2026-01-27 13:40:12] 2026-01-27 12:39:21,223 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:40:12] 2026-01-27 12:39:21,223 | INFO     | **************************************
[2026-01-27 13:40:12] 2026-01-27 12:39:21,223 | INFO     | 
[2026-01-27 13:40:12] 2026-01-27 12:39:21,224 | INFO     | pilot is running in a VM
[2026-01-27 13:40:12] 2026-01-27 12:39:21,224 | INFO     | architecture information:
[2026-01-27 13:40:12] 2026-01-27 12:39:21,231 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:40:12] 2026-01-27 12:39:21,509 | INFO     | cat /etc/os-release:
[2026-01-27 13:40:12] NAME="CentOS Linux"
[2026-01-27 13:40:12] VERSION="7 (Core)"
[2026-01-27 13:40:12] ID="centos"
[2026-01-27 13:40:12] ID_LIKE="rhel fedora"
[2026-01-27 13:40:12] VERSION_ID="7"
[2026-01-27 13:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:40:12] ANSI_COLOR="0;31"
[2026-01-27 13:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:40:12] HOME_URL="https://www.centos.org/"
[2026-01-27 13:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:40:12] 
[2026-01-27 13:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:40:12] 
[2026-01-27 13:40:12] 2026-01-27 12:39:21,509 | INFO     | **************************************
[2026-01-27 13:40:12] 2026-01-27 12:39:22,012 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-27 13:40:12] 2026-01-27 12:39:22,288 | INFO     | sufficient remaining disk space (495163801600 B)
[2026-01-27 13:40:12] 2026-01-27 12:39:22,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:40:12] 2026-01-27 12:39:22,288 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:40:12] 2026-01-27 12:39:22,288 | INFO     | update_server=False
[2026-01-27 13:40:12] 2026-01-27 12:39:22,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:40:12] 2026-01-27 12:39:22,289 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:40:12] 2026-01-27 12:39:22,464 | INFO     | all job control threads have been joined
[2026-01-27 13:40:12] 2026-01-27 12:39:22,728 | INFO     | all data control threads have been joined
[2026-01-27 13:40:12] 2026-01-27 12:39:22,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:40:12] 2026-01-27 12:39:23,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:40:12] 2026-01-27 12:39:23,004 | INFO     | aborting loop
[2026-01-27 13:40:12] 2026-01-27 12:39:23,058 | INFO     | all payload control threads have been joined
[2026-01-27 13:40:12] 2026-01-27 12:39:23,294 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,374 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,470 | INFO     | [job] control thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,564 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,594 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,620 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,630 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,734 | INFO     | [data] control thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:23,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:40:12] 2026-01-27 12:39:24,010 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:24,024 | INFO     | [job] validate thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:24,064 | INFO     | [payload] control thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:24,290 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:24,794 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:24,907 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:24,937 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:26,298 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:40:12] 2026-01-27 12:39:51,428 | INFO     | PID=30958 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 13:40:12] 2026-01-27 12:39:51,428 | INFO     | .. there are 2 such processes running
[2026-01-27 13:40:12] 2026-01-27 12:39:51,428 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:40:12] 2026-01-27 12:39:51,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:40:12] 2026-01-27 12:39:51,429 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:40:12] 2026-01-27 12:40:01,008 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:40:12] 2026-01-27 12:40:01,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033796183872)>', '<ExcThread(monitor, started 140032769779456)>']
[2026-01-27 13:40:12] 2026-01-27 12:40:02,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:40:12] 2026-01-27 12:40:02,494 | INFO     | [monitor] control thread has ended
[2026-01-27 13:40:12] 2026-01-27 12:40:06,585 | INFO     | all workflow threads have been joined
[2026-01-27 13:40:12] 2026-01-27 12:40:06,585 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:40:12] 2026-01-27 12:40:06,586 | INFO     | traces error code: 0
[2026-01-27 13:40:12] 2026-01-27 12:40:06,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:40:12] 2026-01-27 12:40:06,982 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:40:12] 2026-01-27 12:40:07,074 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:40:12] 2026-01-27 12:40:07,165 [wrapper] pilotpid: 30958
[2026-01-27 13:40:12] 2026-01-27 12:40:07,222 [wrapper] Pilot exit status: 0
[2026-01-27 13:40:12] 2026-01-27 12:40:07,718 [wrapper] pandaids: 6983305223
[2026-01-27 13:40:12] 2026-01-27 12:40:08,888 [wrapper] cleanup supervisor_pilot  9346 30959
[2026-01-27 13:40:12] 2026-01-27 12:40:08,998 [wrapper] Test setup, not cleaning
[2026-01-27 13:40:12] 2026-01-27 12:40:09,093 [wrapper] apfmon messages muted
[2026-01-27 13:40:12] 2026-01-27 12:40:09,198 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:40:12] 2026-01-27 12:40:09,303 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:40:12]  *** Error codes and diagnostics ***
[2026-01-27 13:40:12]     "exeErrorCode": 0,
[2026-01-27 13:40:12]     "exeErrorDiag": "",
[2026-01-27 13:40:12]     "pilotErrorCode": 0,
[2026-01-27 13:40:12]     "pilotErrorDiag": "",
[2026-01-27 13:40:12]  *** Listing of results directory ***
[2026-01-27 13:40:12] total 681456
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc    584422 Jan 25 19:47 pilot3.tar.gz
[2026-01-27 13:40:12] -rwx------. 1 boinc boinc     36322 Jan 25 19:51 runpilot2-wrapper.sh
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc      5111 Jan 25 19:53 queuedata.json
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc       100 Jan 27 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:40:12] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 08:54 run_atlas
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc       105 Jan 27 08:54 job.xml
[2026-01-27 13:40:12] -rw-r--r--. 2 boinc boinc 500977326 Jan 27 08:54 EVNT.48318040._000023.pool.root.1
[2026-01-27 13:40:12] -rw-r--r--. 2 boinc boinc    597769 Jan 27 08:54 input.tar.gz
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc      6391 Jan 27 08:54 init_data.xml
[2026-01-27 13:40:12] -rw-r--r--. 2 boinc boinc     15845 Jan 27 08:54 start_atlas.sh
[2026-01-27 13:40:12] drwxrwx--x. 2 boinc boinc        68 Jan 27 08:54 shared
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc         0 Jan 27 08:54 boinc_lockfile
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc      2533 Jan 27 08:54 pandaJob.out
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc       415 Jan 27 09:01 workernode_map.json
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc   1003573 Jan 27 09:01 agis_schedconf.cvmfs.json
[2026-01-27 13:40:12] drwx------. 5 boinc boinc      4096 Jan 27 09:01 pilot3
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc 187212217 Jan 27 13:37 HITS.48318042._001136.pool.root.1
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc       532 Jan 27 13:38 boinc_task_state.xml
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc      1012 Jan 27 13:39 memory_monitor_summary.json
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc   1516246 Jan 27 13:39 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc    513128 Jan 27 13:39 log.48318042._001136.job.log.tgz.1
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc        95 Jan 27 13:39 pilot_heartbeat.json
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc      6320 Jan 27 13:39 heartbeat.json
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc      4880 Jan 27 13:40 pilotlog.txt
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc   2334693 Jan 27 13:40 log.48318042._001136.job.log.1
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc      8192 Jan 27 13:40 boinc_mmap_file
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc        28 Jan 27 13:40 wrapper_checkpoint.txt
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc       357 Jan 27 13:40 output.list
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc       620 Jan 27 13:40 runtime_log
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc   2867200 Jan 27 13:40 result.tar.gz
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc      8816 Jan 27 13:40 runtime_log.err
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc       656 Jan 27 13:40 LymMDmWNK48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCD8KDmHmR8Nn.diag
[2026-01-27 13:40:12] -rw-r--r--. 1 boinc boinc     20655 Jan 27 13:40 stderr.txt
[2026-01-27 13:40:12] HITS file was successfully produced:
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc 187212217 Jan 27 13:37 shared/HITS.pool.root.1
[2026-01-27 13:40:12]  *** Contents of shared directory: ***
[2026-01-27 13:40:12] total 675464
[2026-01-27 13:40:12] -rw-r--r--. 2 boinc boinc 500977326 Jan 27 08:54 ATLAS.root_0
[2026-01-27 13:40:12] -rw-r--r--. 2 boinc boinc    597769 Jan 27 08:54 input.tar.gz
[2026-01-27 13:40:12] -rw-r--r--. 2 boinc boinc     15845 Jan 27 08:54 start_atlas.sh
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc 187212217 Jan 27 13:37 HITS.pool.root.1
[2026-01-27 13:40:12] -rw-------. 1 boinc boinc   2867200 Jan 27 13:40 result.tar.gz
13:40:13 (26992): run_atlas exited; CPU time 62162.298072
13:40:13 (26992): called boinc_finish(0)

</stderr_txt>
]]>

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