Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:20:19 (2305610): wrapper (7.7.26015): starting
09:20:19 (2305610): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 09:20:19] Arguments: --nthreads 3
[2026-01-27 09:20:19] Threads: 3
[2026-01-27 09:20:19] Checking for CVMFS
[2026-01-27 09:20:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 09:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 09:20:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 09:20:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 09:20:20] 2.9.2.0 899330 9574 71820 155578 0 49 36306124 36864001 0 130560 0 4053877 99.986 307759 6324 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 09:20:20] CVMFS is ok
[2026-01-27 09:20:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 09:20:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 09:20:20] Further information can be found at the LHC@home message board.
[2026-01-27 09:20:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 09:20:20] Checking for apptainer binary...
[2026-01-27 09:20:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 09:20:20] Running /usr/bin/apptainer --version
[2026-01-27 09:20:20] apptainer version 1.4.1-1.1
[2026-01-27 09:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 09:20:20] magicA244b
[2026-01-27 09:20:20] apptainer works
[2026-01-27 09:20:20] Set ATHENA_PROC_NUMBER=3
[2026-01-27 09:20:20] Set ATHENA_CORE_NUMBER=3
[2026-01-27 09:20:20] Starting ATLAS job with PandaID=6983458323
[2026-01-27 09:20:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 12:40:03]  *** The last 200 lines of the pilot log: ***
[2026-01-27 12:40:03] 2026-01-27 11:39:28,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 12:40:03] 2026-01-27 11:39:28,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 12:40:03] 2026-01-27 11:39:28,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 12:40:03] 2026-01-27 11:39:28,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 12:40:03] 2026-01-27 11:39:28,656 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 12:40:03] 2026-01-27 11:39:28,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 12:40:03] 2026-01-27 11:39:28,657 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 12:40:03] 2026-01-27 11:39:28,657 | INFO     | job 6983458323 has completed (purged errors)
[2026-01-27 12:40:03] 2026-01-27 11:39:28,657 | INFO     | overall cleanup function is called
[2026-01-27 12:40:03] 2026-01-27 11:39:29,666 | INFO     | --- collectZombieJob: --- 10, [2314087]
[2026-01-27 12:40:03] 2026-01-27 11:39:29,667 | INFO     | zombie collector waiting for pid 2314087
[2026-01-27 12:40:03] 2026-01-27 11:39:29,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 12:40:03] 2026-01-27 11:39:29,667 | INFO     | collected zombie processes
[2026-01-27 12:40:03] 2026-01-27 11:39:29,667 | INFO     | will attempt to kill all subprocesses of pid=2314087
[2026-01-27 12:40:03] 2026-01-27 11:39:29,702 | INFO     | process IDs to be killed: [2314087] (in reverse order)
[2026-01-27 12:40:03] 2026-01-27 11:39:29,727 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 12:40:03] 2026-01-27 11:39:29,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 12:40:03] 2026-01-27 11:39:29,728 | INFO     | did not find any defunct processes belonging to 2314087
[2026-01-27 12:40:03] 2026-01-27 11:39:29,729 | INFO     | did not find any defunct processes belonging to 2314087
[2026-01-27 12:40:03] 2026-01-27 11:39:29,729 | INFO     | ready for new job
[2026-01-27 12:40:03] 2026-01-27 11:39:29,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 12:40:03] 2026-01-27 11:39:29,730 | INFO     | **************************************
[2026-01-27 12:40:03] 2026-01-27 11:39:29,730 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 12:40:03] 2026-01-27 11:39:29,730 | INFO     | **************************************
[2026-01-27 12:40:03] 2026-01-27 11:39:29,730 | INFO     | 
[2026-01-27 12:40:03] 2026-01-27 11:39:29,730 | INFO     | architecture information:
[2026-01-27 12:40:03] 2026-01-27 11:39:29,730 | INFO     | executing command: cat /etc/os-release
[2026-01-27 12:40:03] 2026-01-27 11:39:29,740 | INFO     | cat /etc/os-release:
[2026-01-27 12:40:03] NAME="CentOS Linux"
[2026-01-27 12:40:03] VERSION="7 (Core)"
[2026-01-27 12:40:03] ID="centos"
[2026-01-27 12:40:03] ID_LIKE="rhel fedora"
[2026-01-27 12:40:03] VERSION_ID="7"
[2026-01-27 12:40:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 12:40:03] ANSI_COLOR="0;31"
[2026-01-27 12:40:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 12:40:03] HOME_URL="https://www.centos.org/"
[2026-01-27 12:40:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 12:40:03] 
[2026-01-27 12:40:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 12:40:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 12:40:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 12:40:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 12:40:03] 
[2026-01-27 12:40:03] 2026-01-27 11:39:29,740 | INFO     | **************************************
[2026-01-27 12:40:03] 2026-01-27 11:39:30,244 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | INFO     | sufficient remaining disk space (322679341056 B)
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | INFO     | update_server=False
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:40:03] 2026-01-27 11:39:30,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 12:40:03] 2026-01-27 11:39:30,473 | INFO     | all data control threads have been joined
[2026-01-27 12:40:03] 2026-01-27 11:39:30,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 12:40:03] 2026-01-27 11:39:31,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 12:40:03] 2026-01-27 11:39:31,027 | INFO     | aborting loop
[2026-01-27 12:40:03] 2026-01-27 11:39:31,263 | INFO     | [job] queue monitor thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:31,264 | INFO     | [job] retrieve thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:31,315 | INFO     | all payload control threads have been joined
[2026-01-27 12:40:03] 2026-01-27 11:39:31,356 | INFO     | all job control threads have been joined
[2026-01-27 12:40:03] 2026-01-27 11:39:31,456 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:31,457 | INFO     | [data] copytool_in thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:31,479 | INFO     | [data] control thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:31,850 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,033 | INFO     | [job] job monitor thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,322 | INFO     | [payload] control thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,362 | INFO     | [job] control thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,380 | INFO     | [payload] validate_post thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,464 | INFO     | [payload] failed_post thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,473 | INFO     | [job] validate thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,539 | INFO     | [data] copytool_out thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:32,655 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:34,264 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:40,421 | INFO     | job.realtimelogging is not enabled
[2026-01-27 12:40:03] 2026-01-27 11:39:41,427 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 12:40:03] 2026-01-27 11:39:55,974 | INFO     | [monitor] cgroup control has ended
[2026-01-27 12:40:03] 2026-01-27 11:39:57,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257896511296)>', '<ExcThread(monitor, started 140257173427968)>']
[2026-01-27 12:40:03] 2026-01-27 11:40:00,256 | INFO     | PID=2309661 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 12:40:03] 2026-01-27 11:40:00,256 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 12:40:03] 2026-01-27 11:40:00,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 12:40:03] 2026-01-27 11:40:00,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 12:40:03] 2026-01-27 11:40:00,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 12:40:03] 2026-01-27 11:40:00,257 | INFO     | [monitor] control thread has ended
[2026-01-27 12:40:03] 2026-01-27 11:40:02,912 | INFO     | all workflow threads have been joined
[2026-01-27 12:40:03] 2026-01-27 11:40:02,912 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 12:40:03] 2026-01-27 11:40:02,913 | INFO     | traces error code: 0
[2026-01-27 12:40:03] 2026-01-27 11:40:02,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 12:40:03] 2026-01-27 11:40:02,960 [wrapper] ==== pilot stdout END ====
[2026-01-27 12:40:03] 2026-01-27 11:40:02,962 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 12:40:03] 2026-01-27 11:40:02,965 [wrapper] pilotpid: 2309661
[2026-01-27 12:40:03] 2026-01-27 11:40:02,968 [wrapper] Pilot exit status: 0
[2026-01-27 12:40:03] 2026-01-27 11:40:02,976 [wrapper] pandaids: 6983458323
[2026-01-27 12:40:03] 2026-01-27 11:40:02,992 [wrapper] cleanup supervisor_pilot 2320300 2309662
[2026-01-27 12:40:03] 2026-01-27 11:40:02,995 [wrapper] Test setup, not cleaning
[2026-01-27 12:40:03] 2026-01-27 11:40:02,997 [wrapper] apfmon messages muted
[2026-01-27 12:40:03] 2026-01-27 11:40:03,000 [wrapper] ==== wrapper stdout END ====
[2026-01-27 12:40:03] 2026-01-27 11:40:03,002 [wrapper] ==== wrapper stderr END ====
[2026-01-27 12:40:03]  *** Error codes and diagnostics ***
[2026-01-27 12:40:03]     "exeErrorCode": 0,
[2026-01-27 12:40:03]     "exeErrorDiag": "",
[2026-01-27 12:40:03]     "pilotErrorCode": 0,
[2026-01-27 12:40:03]     "pilotErrorDiag": "",
[2026-01-27 12:40:03]  *** Listing of results directory ***
[2026-01-27 12:40:03] total 464528
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-27 12:40:03] -rwx------ 1 boinc boinc     36322 Jan 25 21:52 runpilot2-wrapper.sh
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc      5111 Jan 25 21:54 queuedata.json
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc       100 Jan 27 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 12:40:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 09:20 run_atlas
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc       105 Jan 27 09:20 job.xml
[2026-01-27 12:40:03] -rw-r--r-- 2 boinc boinc 271202919 Jan 27 09:20 EVNT.48329799._000003.pool.root.1
[2026-01-27 12:40:03] -rw-r--r-- 2 boinc boinc    597790 Jan 27 09:20 input.tar.gz
[2026-01-27 12:40:03] -rw-r--r-- 2 boinc boinc     15845 Jan 27 09:20 start_atlas.sh
[2026-01-27 12:40:03] drwxrwx--x 2 boinc boinc      4096 Jan 27 09:20 shared
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc         0 Jan 27 09:20 boinc_setup_complete
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc      6199 Jan 27 09:20 init_data.xml
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc         0 Jan 27 09:20 boinc_lockfile
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc      2634 Jan 27 09:20 pandaJob.out
[2026-01-27 12:40:03] -rw------- 1 boinc boinc   1003573 Jan 27 09:20 agis_schedconf.cvmfs.json
[2026-01-27 12:40:03] -rw------- 1 boinc boinc       431 Jan 27 09:20 workernode_map.json
[2026-01-27 12:40:03] drwx------ 5 boinc boinc      4096 Jan 27 09:20 pilot3
[2026-01-27 12:40:03] -rw------- 1 boinc boinc 196442815 Jan 27 12:39 HITS.48329801._000072.pool.root.1
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc       530 Jan 27 12:39 boinc_task_state.xml
[2026-01-27 12:40:03] -rw------- 1 boinc boinc      1017 Jan 27 12:39 memory_monitor_summary.json
[2026-01-27 12:40:03] -rw------- 1 boinc boinc   1516246 Jan 27 12:39 agis_ddmendpoints.agis.ALL.json
[2026-01-27 12:40:03] -rw------- 1 boinc boinc    364661 Jan 27 12:39 log.48329801._000072.job.log.tgz.1
[2026-01-27 12:40:03] -rw------- 1 boinc boinc        95 Jan 27 12:39 pilot_heartbeat.json
[2026-01-27 12:40:03] -rw------- 1 boinc boinc      6316 Jan 27 12:39 heartbeat.json
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc      8192 Jan 27 12:39 boinc_mmap_file
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc        28 Jan 27 12:39 wrapper_checkpoint.txt
[2026-01-27 12:40:03] -rw------- 1 boinc boinc      4820 Jan 27 12:40 pilotlog.txt
[2026-01-27 12:40:03] -rw------- 1 boinc boinc   1686767 Jan 27 12:40 log.48329801._000072.job.log.1
[2026-01-27 12:40:03] -rw------- 1 boinc boinc       357 Jan 27 12:40 output.list
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc       620 Jan 27 12:40 runtime_log
[2026-01-27 12:40:03] -rw------- 1 boinc boinc   2068480 Jan 27 12:40 result.tar.gz
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc      8917 Jan 27 12:40 runtime_log.err
[2026-01-27 12:40:03] -rw------- 1 boinc boinc       664 Jan 27 12:40 K6eMDmFHM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmft1KDmHPxqim.diag
[2026-01-27 12:40:03] -rw-r--r-- 1 boinc boinc     11614 Jan 27 12:40 stderr.txt
[2026-01-27 12:40:03] HITS file was successfully produced:
[2026-01-27 12:40:03] -rw------- 1 boinc boinc 196442815 Jan 27 12:39 shared/HITS.pool.root.1
[2026-01-27 12:40:03]  *** Contents of shared directory: ***
[2026-01-27 12:40:03] total 459316
[2026-01-27 12:40:03] -rw-r--r-- 2 boinc boinc 271202919 Jan 27 09:20 ATLAS.root_0
[2026-01-27 12:40:03] -rw-r--r-- 2 boinc boinc    597790 Jan 27 09:20 input.tar.gz
[2026-01-27 12:40:03] -rw-r--r-- 2 boinc boinc     15845 Jan 27 09:20 start_atlas.sh
[2026-01-27 12:40:03] -rw------- 1 boinc boinc 196442815 Jan 27 12:39 HITS.pool.root.1
[2026-01-27 12:40:03] -rw------- 1 boinc boinc   2068480 Jan 27 12:40 result.tar.gz
12:40:04 (2305610): run_atlas exited; CPU time 34955.166893
12:40:04 (2305610): called boinc_finish(0)

</stderr_txt>
]]>

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