Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:49:27 (2948010): wrapper (7.7.26015): starting
17:49:27 (2948010): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 17:49:27] Arguments: --nthreads 8
[2026-01-26 17:49:27] Threads: 8
[2026-01-26 17:49:27] Checking for CVMFS
[2026-01-26 17:49:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 17:49:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 17:49:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 17:49:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 17:49:29] 2.13.3.0 10749 74825 541644 155564 3 554 26793305 32935937 51839 16776704 0 853045693 99.805 412959119 28915 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 17:49:29] CVMFS is ok
[2026-01-26 17:49:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 17:49:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 17:49:29] Further information can be found at the LHC@home message board.
[2026-01-26 17:49:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 17:49:29] Checking for apptainer binary...
[2026-01-26 17:49:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 17:49:29] Running /usr/bin/apptainer --version
[2026-01-26 17:49:29] apptainer version 1.4.5-2.el9
[2026-01-26 17:49:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 17:49:30] lc-12-33.aglt2.org
[2026-01-26 17:49:30] apptainer works
[2026-01-26 17:49:30] Set ATHENA_PROC_NUMBER=8
[2026-01-26 17:49:30] Set ATHENA_CORE_NUMBER=8
[2026-01-26 17:49:30] Starting ATLAS job with PandaID=6984043657
[2026-01-26 17:49:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:01:43 (1840130): wrapper (7.7.26015): starting
01:01:43 (1840130): wrapper: running run_atlas (--nthreads 9)
[2026-01-27 01:01:43] Arguments: --nthreads 9
[2026-01-27 01:01:43] Threads: 9
[2026-01-27 01:01:43] This job has been restarted, cleaning up previous attempt
[2026-01-27 01:01:43] Checking for CVMFS
[2026-01-27 01:01:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 01:01:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 01:01:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 01:01:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 01:01:44] 2.13.3.0 10749 75258 535872 155574 0 467 18114608 32935936 45658 16776704 0 856639000 99.804 414959404 28902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-27 01:01:44] CVMFS is ok
[2026-01-27 01:01:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 01:01:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 01:01:44] Further information can be found at the LHC@home message board.
[2026-01-27 01:01:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 01:01:44] Checking for apptainer binary...
[2026-01-27 01:01:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 01:01:44] Running /usr/bin/apptainer --version
[2026-01-27 01:01:44] apptainer version 1.4.5-2.el9
[2026-01-27 01:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 01:01:44] lc-12-33.aglt2.org
[2026-01-27 01:01:44] apptainer works
[2026-01-27 01:01:44] Set ATHENA_PROC_NUMBER=9
[2026-01-27 01:01:44] Set ATHENA_CORE_NUMBER=9
[2026-01-27 01:01:44] Starting ATLAS job with PandaID=6984043657
[2026-01-27 01:01:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 06:49:54]  *** The last 200 lines of the pilot log: ***
[2026-01-27 06:49:54] 2026-01-27 11:49:01,087 | INFO     | total number of processed events: 400 (read)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,230 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6984043657/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,254 | INFO     | extracted standard info from prmon json
[2026-01-27 06:49:54] 2026-01-27 11:49:01,254 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 06:49:54] 2026-01-27 11:49:01,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 06:49:54] 2026-01-27 11:49:01,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 06:49:54] 2026-01-27 11:49:01,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 06:49:54] 2026-01-27 11:49:01,275 | INFO     | fitting pss+swap vs Time
[2026-01-27 06:49:54] 2026-01-27 11:49:01,277 | INFO     | sum of square deviations: 12295123060.01763
[2026-01-27 06:49:54] 2026-01-27 11:49:01,281 | INFO     | sum of deviations: 63223539449.6803
[2026-01-27 06:49:54] 2026-01-27 11:49:01,281 | INFO     | mean x: 1769504126.0762463
[2026-01-27 06:49:54] 2026-01-27 11:49:01,281 | INFO     | mean y: 2530863.281524927
[2026-01-27 06:49:54] 2026-01-27 11:49:01,282 | INFO     | intersect: -9096549591.240839
[2026-01-27 06:49:54] 2026-01-27 11:49:01,282 | INFO     | chi2: 2.40611349076417
[2026-01-27 06:49:54] 2026-01-27 11:49:01,298 | INFO     | sum of square deviations: 11762172159.988056
[2026-01-27 06:49:54] 2026-01-27 11:49:01,301 | INFO     | sum of deviations: 84277277283.0298
[2026-01-27 06:49:54] 2026-01-27 11:49:01,311 | INFO     | mean x: 1769503973.577381
[2026-01-27 06:49:54] 2026-01-27 11:49:01,312 | INFO     | mean y: 2536811.556547619
[2026-01-27 06:49:54] 2026-01-27 11:49:01,312 | INFO     | intersect: -12676156800.997702
[2026-01-27 06:49:54] 2026-01-27 11:49:01,312 | INFO     | chi2: 1.6847345795217457
[2026-01-27 06:49:54] 2026-01-27 11:49:01,312 | INFO     | current chi2=1.6847345795217457 (change=29.981084184575103 %)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,313 | INFO     | sum of square deviations: 11244849459.957747
[2026-01-27 06:49:54] 2026-01-27 11:49:01,327 | INFO     | sum of deviations: 82719378960.12392
[2026-01-27 06:49:54] 2026-01-27 11:49:01,327 | INFO     | mean x: 1769503821.0785499
[2026-01-27 06:49:54] 2026-01-27 11:49:01,327 | INFO     | mean y: 2536352.3413897282
[2026-01-27 06:49:54] 2026-01-27 11:49:01,327 | INFO     | intersect: -13014290388.506226
[2026-01-27 06:49:54] 2026-01-27 11:49:01,327 | INFO     | chi2: 1.684883392859038
[2026-01-27 06:49:54] 2026-01-27 11:49:01,328 | INFO     | current chi2=1.684883392859038 (change=-0.008833043442052815 %)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,328 | INFO     | right removable region: 330
[2026-01-27 06:49:54] 2026-01-27 11:49:01,328 | INFO     | sum of square deviations: 11762156299.988056
[2026-01-27 06:49:54] 2026-01-27 11:49:01,335 | INFO     | sum of deviations: 690310811.4940338
[2026-01-27 06:49:54] 2026-01-27 11:49:01,335 | INFO     | mean x: 1769504278.577381
[2026-01-27 06:49:54] 2026-01-27 11:49:01,335 | INFO     | mean y: 2548664.038690476
[2026-01-27 06:49:54] 2026-01-27 11:49:01,335 | INFO     | intersect: -101302016.34107603
[2026-01-27 06:49:54] 2026-01-27 11:49:01,335 | INFO     | chi2: 0.7682699549532589
[2026-01-27 06:49:54] 2026-01-27 11:49:01,336 | INFO     | current chi2=0.7682699549532589 (change=68.07008655650488 %)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,336 | INFO     | sum of square deviations: 11244817739.957747
[2026-01-27 06:49:54] 2026-01-27 11:49:01,342 | INFO     | sum of deviations: -6109802623.4139
[2026-01-27 06:49:54] 2026-01-27 11:49:01,343 | INFO     | mean x: 1769504431.0785499
[2026-01-27 06:49:54] 2026-01-27 11:49:01,343 | INFO     | mean y: 2550651.0543806646
[2026-01-27 06:49:54] 2026-01-27 11:49:01,343 | INFO     | intersect: 964000010.6761818
[2026-01-27 06:49:54] 2026-01-27 11:49:01,343 | INFO     | chi2: 0.7376653311071255
[2026-01-27 06:49:54] 2026-01-27 11:49:01,343 | INFO     | current chi2=0.7376653311071255 (change=3.9835768207277287 %)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,344 | INFO     | left removable region: 20
[2026-01-27 06:49:54] 2026-01-27 11:49:01,344 | INFO     | sum of square deviations: 9237500893.793629
[2026-01-27 06:49:54] 2026-01-27 11:49:01,346 | INFO     | sum of deviations: 14790774245.509676
[2026-01-27 06:49:54] 2026-01-27 11:49:01,350 | INFO     | mean x: 1769504400.5741935
[2026-01-27 06:49:54] 2026-01-27 11:49:01,350 | INFO     | mean y: 2556891.2387096775
[2026-01-27 06:49:54] 2026-01-27 11:49:01,351 | INFO     | intersect: -2830713753.7376986
[2026-01-27 06:49:54] 2026-01-27 11:49:01,351 | INFO     | chi2: 0.0020576197235975084
[2026-01-27 06:49:54] 2026-01-27 11:49:01,351 | INFO     | current memory leak: 1.60 B/s (using 310 data points, chi2=0.00)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | could have reported an average CPU frequency of 2721 MHz (15 samples)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | ..............................
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . Timing measurements:
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . get job = 0 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . initial setup = 1 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . payload setup = 12 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . stage-in = 0 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . payload execution = 20783 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . stage-out = 5 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,352 | INFO     | . log creation = 1 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,353 | INFO     | ..............................
[2026-01-27 06:49:54] 2026-01-27 11:49:01,566 | INFO     | 
[2026-01-27 06:49:54] 2026-01-27 11:49:01,566 | INFO     | job summary report
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | --------------------------------------------------
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | PanDA job id: 6984043657
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | task id: 48317872
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | errors: (none)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | pilot state: finished 
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | transexitcode: 0
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | exeerrorcode: 0
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | exeerrordiag: 
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | exitcode: 0
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | exitmsg: OK
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | cpuconsumptiontime: 41804 s
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | nevents: 400
[2026-01-27 06:49:54] 2026-01-27 11:49:01,567 | INFO     | neventsw: 0
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | pid: 1869746
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | pgrp: 1869746
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | corecount: 9
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | event service: False
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | sizes: {0: 2283741, 1: 2284258, 20801: 2317613, 20802: 2317612, 20809: 2326666, 20811: 2326722, 20812: 2327044}
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | --------------------------------------------------
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | 
[2026-01-27 06:49:54] 2026-01-27 11:49:01,568 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-27 06:49:54] 2026-01-27 11:49:01,654 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,654 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,654 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,654 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,655 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 06:49:54] 2026-01-27 11:49:01,656 | INFO     | job 6984043657 has completed (purged errors)
[2026-01-27 06:49:54] 2026-01-27 11:49:01,656 | INFO     | overall cleanup function is called
[2026-01-27 06:49:54] 2026-01-27 11:49:02,074 | INFO     | number of running child processes to parent process 1869746: 1
[2026-01-27 06:49:54] 2026-01-27 11:49:02,074 | INFO     | maximum number of monitored processes: 6
[2026-01-27 06:49:54] 2026-01-27 11:49:02,074 | INFO     | aborting job monitoring since job object (job id=6984043657) has expired
[2026-01-27 06:49:54] 2026-01-27 11:49:02,702 | INFO     | --- collectZombieJob: --- 10, [1869746]
[2026-01-27 06:49:54] 2026-01-27 11:49:02,702 | INFO     | zombie collector waiting for pid 1869746
[2026-01-27 06:49:54] 2026-01-27 11:49:02,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 06:49:54] 2026-01-27 11:49:02,703 | INFO     | collected zombie processes
[2026-01-27 06:49:54] 2026-01-27 11:49:02,703 | INFO     | will attempt to kill all subprocesses of pid=1869746
[2026-01-27 06:49:54] 2026-01-27 11:49:05,178 | INFO     | process IDs to be killed: [1869746] (in reverse order)
[2026-01-27 06:49:54] 2026-01-27 11:49:05,711 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 06:49:54] 2026-01-27 11:49:05,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 06:49:54] 2026-01-27 11:49:05,846 | INFO     | did not find any defunct processes belonging to 1869746
[2026-01-27 06:49:54] 2026-01-27 11:49:05,916 | INFO     | did not find any defunct processes belonging to 1869746
[2026-01-27 06:49:54] 2026-01-27 11:49:05,916 | INFO     | ready for new job
[2026-01-27 06:49:54] 2026-01-27 11:49:05,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 06:49:54] 2026-01-27 11:49:05,927 | INFO     | **************************************
[2026-01-27 06:49:54] 2026-01-27 11:49:05,927 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 06:49:54] 2026-01-27 11:49:05,927 | INFO     | **************************************
[2026-01-27 06:49:54] 2026-01-27 11:49:05,927 | INFO     | 
[2026-01-27 06:49:54] 2026-01-27 11:49:05,939 | INFO     | architecture information:
[2026-01-27 06:49:54] 2026-01-27 11:49:05,948 | INFO     | executing command: cat /etc/os-release
[2026-01-27 06:49:54] 2026-01-27 11:49:05,988 | INFO     | cat /etc/os-release:
[2026-01-27 06:49:54] NAME="CentOS Linux"
[2026-01-27 06:49:54] VERSION="7 (Core)"
[2026-01-27 06:49:54] ID="centos"
[2026-01-27 06:49:54] ID_LIKE="rhel fedora"
[2026-01-27 06:49:54] VERSION_ID="7"
[2026-01-27 06:49:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 06:49:54] ANSI_COLOR="0;31"
[2026-01-27 06:49:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 06:49:54] HOME_URL="https://www.centos.org/"
[2026-01-27 06:49:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 06:49:54] 
[2026-01-27 06:49:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 06:49:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 06:49:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 06:49:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 06:49:54] 
[2026-01-27 06:49:54] 2026-01-27 11:49:05,990 | INFO     | **************************************
[2026-01-27 06:49:54] 2026-01-27 11:49:06,493 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-27 06:49:54] 2026-01-27 11:49:06,609 | INFO     | sufficient remaining disk space (67201138688 B)
[2026-01-27 06:49:54] 2026-01-27 11:49:06,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 06:49:54] 2026-01-27 11:49:06,610 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 06:49:54] 2026-01-27 11:49:06,610 | INFO     | update_server=False
[2026-01-27 06:49:54] 2026-01-27 11:49:06,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 06:49:54] 2026-01-27 11:49:06,611 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 06:49:54] 2026-01-27 11:49:06,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 06:49:54] 2026-01-27 11:49:06,615 | INFO     | aborting loop
[2026-01-27 06:49:54] 2026-01-27 11:49:06,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 06:49:54] 2026-01-27 11:49:06,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 06:49:54] 2026-01-27 11:49:07,616 | INFO     | [job] retrieve thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:07,620 | INFO     | [job] job monitor thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:07,632 | INFO     | all job control threads have been joined
[2026-01-27 06:49:54] 2026-01-27 11:49:07,637 | INFO     | [job] queue monitor thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:07,701 | INFO     | [payload] failed_post thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:07,703 | INFO     | [job] validate thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:07,711 | INFO     | [payload] validate_post thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:07,735 | INFO     | all data control threads have been joined
[2026-01-27 06:49:54] 2026-01-27 11:49:07,851 | INFO     | all payload control threads have been joined
[2026-01-27 06:49:54] 2026-01-27 11:49:08,155 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:08,541 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:08,545 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:08,638 | INFO     | [job] control thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:08,730 | INFO     | [data] copytool_out thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:08,743 | INFO     | [data] control thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:08,859 | INFO     | [payload] control thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:09,108 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:09,109 | INFO     | [data] copytool_in thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:10,625 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 06:49:54] 2026-01-27 11:49:34,960 | INFO     | PID=1860220 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 06:49:54] 2026-01-27 11:49:34,961 | INFO     | .. there are 74 such processes running
[2026-01-27 06:49:54] 2026-01-27 11:49:34,962 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 06:49:54] 2026-01-27 11:49:34,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 06:49:54] 2026-01-27 11:49:34,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 06:49:54] 2026-01-27 11:49:46,257 | INFO     | [monitor] cgroup control has ended
[2026-01-27 06:49:54] 2026-01-27 11:49:47,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140324445857600)>', '<ExcThread(monitor, started 140324055787264)>']
[2026-01-27 06:49:54] 2026-01-27 11:49:48,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 06:49:54] 2026-01-27 11:49:48,082 | INFO     | [monitor] control thread has ended
[2026-01-27 06:49:54] 2026-01-27 11:49:52,395 | INFO     | all workflow threads have been joined
[2026-01-27 06:49:54] 2026-01-27 11:49:52,395 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 06:49:54] 2026-01-27 11:49:52,396 | INFO     | traces error code: 0
[2026-01-27 06:49:54] 2026-01-27 11:49:52,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 06:49:54] 2026-01-27 11:49:53,708 [wrapper] ==== pilot stdout END ====
[2026-01-27 06:49:54] 2026-01-27 11:49:53,727 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 06:49:54] 2026-01-27 11:49:53,741 [wrapper] pilotpid: 1860220
[2026-01-27 06:49:54] 2026-01-27 11:49:53,778 [wrapper] Pilot exit status: 0
[2026-01-27 06:49:54] 2026-01-27 11:49:53,853 [wrapper] pandaids: 6984043657 6984043657
[2026-01-27 06:49:54] 2026-01-27 11:49:54,190 [wrapper] cleanup supervisor_pilot 1073751 1860221
[2026-01-27 06:49:54] 2026-01-27 11:49:54,194 [wrapper] Test setup, not cleaning
[2026-01-27 06:49:54] 2026-01-27 11:49:54,196 [wrapper] apfmon messages muted
[2026-01-27 06:49:54] 2026-01-27 11:49:54,199 [wrapper] ==== wrapper stdout END ====
[2026-01-27 06:49:54] 2026-01-27 11:49:54,201 [wrapper] ==== wrapper stderr END ====
[2026-01-27 06:49:54]  *** Error codes and diagnostics ***
[2026-01-27 06:49:54]     "exeErrorCode": 0,
[2026-01-27 06:49:54]     "exeErrorDiag": "",
[2026-01-27 06:49:54]     "pilotErrorCode": 0,
[2026-01-27 06:49:54]     "pilotErrorDiag": "",
[2026-01-27 06:49:54]  *** Listing of results directory ***
[2026-01-27 06:49:54] total 1148440
[2026-01-27 06:49:54] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-27 06:49:54] -rwx------. 1 boincer umatlas     36322 Jan 26 00:14 runpilot2-wrapper.sh
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas      5111 Jan 26 00:15 queuedata.json
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas       100 Jan 26 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 06:49:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 17:49 run_atlas
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas       105 Jan 26 17:49 job.xml
[2026-01-27 06:49:54] -rw-r--r--. 3 boincer umatlas 492757001 Jan 26 17:49 EVNT.48317869._000047.pool.root.1
[2026-01-27 06:49:54] -rw-r--r--. 3 boincer umatlas 492757001 Jan 26 17:49 ATLAS.root_0
[2026-01-27 06:49:54] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 17:49 start_atlas.sh
[2026-01-27 06:49:54] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 17:49 shared
[2026-01-27 06:49:54] -rw-r--r--. 2 boincer umatlas    597743 Jan 26 17:49 input.tar.gz
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas         0 Jan 26 17:49 boinc_lockfile
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas      2513 Jan 27 01:01 pandaJob.out
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas        57 Jan 27 01:01 setup.sh.local
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas   1004335 Jan 27 01:02 agis_schedconf.cvmfs.json
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas       441 Jan 27 01:02 workernode_map.json
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas 180729696 Jan 27 06:47 HITS.48317872._002325.pool.root.1
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas       532 Jan 27 06:47 boinc_task_state.xml
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas      6863 Jan 27 06:48 init_data.xml
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas      1044 Jan 27 06:48 memory_monitor_summary.json
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas   1516246 Jan 27 06:48 agis_ddmendpoints.agis.ALL.json
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas    529264 Jan 27 06:48 log.48317872._002325.job.log.tgz.1
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas      6387 Jan 27 06:49 heartbeat.json
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas        96 Jan 27 06:49 pilot_heartbeat.json
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 06:49 boinc_mmap_file
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas        28 Jan 27 06:49 wrapper_checkpoint.txt
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas      4820 Jan 27 06:49 pilotlog.txt
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas   2370563 Jan 27 06:49 log.48317872._002325.job.log.1
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas       357 Jan 27 06:49 output.list
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas       620 Jan 27 06:49 runtime_log
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas   2918400 Jan 27 06:49 result.tar.gz
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas      9427 Jan 27 06:49 runtime_log.err
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas       780 Jan 27 06:49 iOXMDm96T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm558KDmM274Uo.diag
[2026-01-27 06:49:54] -rw-r--r--. 1 boincer umatlas     23325 Jan 27 06:49 stderr.txt
[2026-01-27 06:49:54] HITS file was successfully produced:
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas 180729696 Jan 27 06:47 shared/HITS.pool.root.1
[2026-01-27 06:49:54]  *** Contents of shared directory: ***
[2026-01-27 06:49:54] total 661168
[2026-01-27 06:49:54] -rw-r--r--. 3 boincer umatlas 492757001 Jan 26 17:49 ATLAS.root_0
[2026-01-27 06:49:54] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 17:49 start_atlas.sh
[2026-01-27 06:49:54] -rw-r--r--. 2 boincer umatlas    597743 Jan 26 17:49 input.tar.gz
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas 180729696 Jan 27 06:47 HITS.pool.root.1
[2026-01-27 06:49:54] -rw-------. 1 boincer umatlas   2918400 Jan 27 06:49 result.tar.gz
06:49:56 (1840130): run_atlas exited; CPU time 43087.741580
06:49:56 (1840130): called boinc_finish(0)

</stderr_txt>
]]>

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