Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:10:45 (457038): wrapper (7.7.26015): starting
17:10:45 (457038): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 17:10:45] Arguments: --nthreads 8
[2026-01-26 17:10:45] Threads: 8
[2026-01-26 17:10:45] Checking for CVMFS
[2026-01-26 17:10:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 17:10:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 17:10:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 17:10:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 17:10:47] 2.13.3.0 10223 118450 276704 155562 1 1058 33669611 40960000 47080 16776704 0 1291151128 99.706 1009171486 50760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 17:10:47] CVMFS is ok
[2026-01-26 17:10:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 17:10:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 17:10:47] Further information can be found at the LHC@home message board.
[2026-01-26 17:10:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 17:10:47] Checking for apptainer binary...
[2026-01-26 17:10:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 17:10:47] Running /usr/bin/apptainer --version
[2026-01-26 17:10:47] apptainer version 1.4.5-2.el9
[2026-01-26 17:10:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 17:10:48] c8-7-6.aglt2.org
[2026-01-26 17:10:48] apptainer works
[2026-01-26 17:10:48] Set ATHENA_PROC_NUMBER=8
[2026-01-26 17:10:48] Set ATHENA_CORE_NUMBER=8
[2026-01-26 17:10:48] Starting ATLAS job with PandaID=6983772687
[2026-01-26 17:10:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 18:56:12]  *** The last 200 lines of the pilot log: ***
[2026-01-26 18:56:12]  is_tar=False
[2026-01-26 18:56:12]  lfn=log.48318042._001811.job.log.tgz.1
[2026-01-26 18:56:12]  mtime=0
[2026-01-26 18:56:12]  protocol_id=None
[2026-01-26 18:56:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 18:56:12]  replicas=None
[2026-01-26 18:56:12]  scope=mc23_13p6TeV
[2026-01-26 18:56:12]  status=None
[2026-01-26 18:56:12]  status_code=0
[2026-01-26 18:56:12]  storage_token=
[2026-01-26 18:56:12]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6983772687/log.48318042._001811.job.log.tgz.1
[2026-01-26 18:56:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/eb/log.48318042._001811.job.log.tgz.1
[2026-01-26 18:56:12]  workdir=None
[2026-01-26 18:56:12] ]
[2026-01-26 18:56:12] 2026-01-26 23:48:30,695 | INFO     | transferring file log.48318042._001811.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6983772687/log.48318042._001811.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 18:56:12] 2026-01-26 23:48:30,695 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6983772687/log.48318042._001811.job.log.tgz.1 /tmp/boinchome/slots/4/log.48318042._001811.job
[2026-01-26 18:56:12] 2026-01-26 23:48:30,879 | INFO     | adding to output.list: log.48318042._001811.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/eb/log.48318042._001811.job.log.tg
[2026-01-26 18:56:12] 2026-01-26 23:48:30,880 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 18:56:12] 2026-01-26 23:48:30,880 | INFO     | summary of transferred files:
[2026-01-26 18:56:12] 2026-01-26 23:48:30,880 | INFO     |  -- lfn=log.48318042._001811.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 18:56:12] 2026-01-26 23:48:30,880 | INFO     | stage-out finished correctly
[2026-01-26 18:56:12] 2026-01-26 23:48:31,450 | INFO     | monitor loop #359: job 0:6983772687 is in state 'finished'
[2026-01-26 18:56:12] 2026-01-26 23:48:31,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 18:56:12] 2026-01-26 23:48:32,607 | INFO     | time since job start (5751s) is within the limit (349056.0s)
[2026-01-26 18:56:12] 2026-01-26 23:48:33,954 | INFO     | monitor loop #360: job 0:6983772687 is in state 'finished'
[2026-01-26 18:56:12] 2026-01-26 23:48:33,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,264 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 18:56:12] 2026-01-26 23:48:34,500 | INFO     | job 6983772687 has state=finished
[2026-01-26 18:56:12] 2026-01-26 23:48:34,500 | INFO     | preparing for final server update for job 6983772687 in state='finished'
[2026-01-26 18:56:12] 2026-01-26 23:48:34,639 | INFO     | time since job start (5753s) is within the limit (349056.0s)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,671 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,672 | INFO     | reading metadata from: /tmp/boinchome/slots/4/PanDA_Pilot-6983772687/jobReport.json
[2026-01-26 18:56:12] 2026-01-26 23:48:34,673 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/4/workernode_map.json
[2026-01-26 18:56:12] 2026-01-26 23:48:34,673 | INFO     | this job has now completed (state=finished)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,673 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,673 | INFO     | log transfer has been attempted: DONE
[2026-01-26 18:56:12] 2026-01-26 23:48:34,673 | INFO     | job 6983772687 has finished - writing final server update
[2026-01-26 18:56:12] 2026-01-26 23:48:34,674 | INFO     | total number of processed events: 400 (read)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,767 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6983772687/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,768 | INFO     | extracted standard info from prmon json
[2026-01-26 18:56:12] 2026-01-26 23:48:34,768 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 18:56:12] 2026-01-26 23:48:34,768 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 18:56:12] 2026-01-26 23:48:34,768 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 18:56:12] 2026-01-26 23:48:34,768 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 18:56:12] 2026-01-26 23:48:34,769 | INFO     | fitting pss+swap vs Time
[2026-01-26 18:56:12] 2026-01-26 23:48:34,769 | INFO     | sum of square deviations: 204163707.95402288
[2026-01-26 18:56:12] 2026-01-26 23:48:34,769 | INFO     | sum of deviations: 157732883.72413793
[2026-01-26 18:56:12] 2026-01-26 23:48:34,769 | INFO     | mean x: 1769468548.0229886
[2026-01-26 18:56:12] 2026-01-26 23:48:34,770 | INFO     | mean y: 2520609.1379310344
[2026-01-26 18:56:12] 2026-01-26 23:48:34,770 | INFO     | intersect: -1364536149.0675113
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | chi2: 0.0008478833546343347
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | current memory leak: 0.77 B/s (using 87 data points, chi2=0.00)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | ..............................
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | . Timing measurements:
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | . get job = 0 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | . initial setup = 32 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,778 | INFO     | . payload setup = 28 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,779 | INFO     | . stage-in = 0 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,779 | INFO     | . payload execution = 5704 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,779 | INFO     | . stage-out = 1 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,779 | INFO     | . log creation = 0 s
[2026-01-26 18:56:12] 2026-01-26 23:48:34,779 | INFO     | ..............................
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | 
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | job summary report
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | --------------------------------------------------
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | PanDA job id: 6983772687
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | task id: 48318042
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | errors: (none)
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | pilot state: finished 
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | transexitcode: 0
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | exeerrorcode: 0
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | exeerrordiag: 
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | exitcode: 0
[2026-01-26 18:56:12] 2026-01-26 23:48:35,242 | INFO     | exitmsg: OK
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | cpuconsumptiontime: 23932 s
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | nevents: 400
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | neventsw: 0
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | pid: 521629
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | pgrp: 521629
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | corecount: 8
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | event service: False
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | sizes: {0: 2284191, 1: 2284279, 12: 2284279, 5733: 2310866, 5734: 2310865, 5737: 2319919, 5741: 2320297}
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | --------------------------------------------------
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | 
[2026-01-26 18:56:12] 2026-01-26 23:48:35,243 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-26 18:56:12] 2026-01-26 23:48:35,330 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 18:56:12] 2026-01-26 23:48:35,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,333 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 18:56:12] 2026-01-26 23:48:35,333 | INFO     | job 6983772687 has completed (purged errors)
[2026-01-26 18:56:12] 2026-01-26 23:48:35,333 | INFO     | overall cleanup function is called
[2026-01-26 18:56:12] 2026-01-26 23:48:36,345 | INFO     | --- collectZombieJob: --- 10, [521629]
[2026-01-26 18:56:12] 2026-01-26 23:48:36,345 | INFO     | zombie collector waiting for pid 521629
[2026-01-26 18:56:12] 2026-01-26 23:48:36,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 18:56:12] 2026-01-26 23:48:36,345 | INFO     | collected zombie processes
[2026-01-26 18:56:12] 2026-01-26 23:48:36,345 | INFO     | will attempt to kill all subprocesses of pid=521629
[2026-01-26 18:56:12] 2026-01-26 23:48:37,884 | INFO     | process IDs to be killed: [521629] (in reverse order)
[2026-01-26 18:56:12] 2026-01-26 23:48:38,344 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 18:56:12] 2026-01-26 23:48:38,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 18:56:12] 2026-01-26 23:48:38,428 | INFO     | did not find any defunct processes belonging to 521629
[2026-01-26 18:56:12] 2026-01-26 23:48:38,492 | INFO     | did not find any defunct processes belonging to 521629
[2026-01-26 18:56:12] 2026-01-26 23:48:38,492 | INFO     | ready for new job
[2026-01-26 18:56:12] 2026-01-26 23:48:38,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 18:56:12] 2026-01-26 23:48:38,493 | INFO     | **************************************
[2026-01-26 18:56:12] 2026-01-26 23:48:38,493 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 18:56:12] 2026-01-26 23:48:38,493 | INFO     | **************************************
[2026-01-26 18:56:12] 2026-01-26 23:48:38,493 | INFO     | 
[2026-01-26 18:56:12] 2026-01-26 23:48:38,501 | INFO     | architecture information:
[2026-01-26 18:56:12] 2026-01-26 23:48:38,502 | INFO     | executing command: cat /etc/os-release
[2026-01-26 18:56:12] 2026-01-26 23:48:38,554 | INFO     | cat /etc/os-release:
[2026-01-26 18:56:12] NAME="CentOS Linux"
[2026-01-26 18:56:12] VERSION="7 (Core)"
[2026-01-26 18:56:12] ID="centos"
[2026-01-26 18:56:12] ID_LIKE="rhel fedora"
[2026-01-26 18:56:12] VERSION_ID="7"
[2026-01-26 18:56:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 18:56:12] ANSI_COLOR="0;31"
[2026-01-26 18:56:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 18:56:12] HOME_URL="https://www.centos.org/"
[2026-01-26 18:56:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 18:56:12] 
[2026-01-26 18:56:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 18:56:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 18:56:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 18:56:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 18:56:12] 
[2026-01-26 18:56:12] 2026-01-26 23:48:38,554 | INFO     | **************************************
[2026-01-26 18:56:12] 2026-01-26 23:48:39,058 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-26 18:56:12] 2026-01-26 23:48:39,124 | INFO     | sufficient remaining disk space (167866531840 B)
[2026-01-26 18:56:12] 2026-01-26 23:48:39,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 18:56:12] 2026-01-26 23:48:39,124 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 18:56:12] 2026-01-26 23:48:39,125 | INFO     | update_server=False
[2026-01-26 18:56:12] 2026-01-26 23:48:39,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 18:56:12] 2026-01-26 23:48:39,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 18:56:12] 2026-01-26 23:48:39,673 | INFO     | all job control threads have been joined
[2026-01-26 18:56:12] 2026-01-26 23:48:39,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 18:56:12] 2026-01-26 23:48:39,921 | INFO     | all data control threads have been joined
[2026-01-26 18:56:12] 2026-01-26 23:48:39,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 18:56:12] 2026-01-26 23:48:39,989 | INFO     | aborting loop
[2026-01-26 18:56:12] 2026-01-26 23:48:40,130 | INFO     | [job] retrieve thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,134 | INFO     | [job] validate thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,299 | INFO     | [payload] validate_post thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,331 | INFO     | all payload control threads have been joined
[2026-01-26 18:56:12] 2026-01-26 23:48:40,372 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,474 | INFO     | [payload] failed_post thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 18:56:12] 2026-01-26 23:48:40,627 | INFO     | [data] copytool_in thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,681 | INFO     | [job] control thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,736 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,923 | INFO     | [job] queue monitor thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,927 | INFO     | [data] control thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:40,995 | INFO     | [job] job monitor thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:41,139 | INFO     | [data] copytool_out thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:41,265 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:41,340 | INFO     | [payload] control thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:44,536 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:49,911 | INFO     | job.realtimelogging is not enabled
[2026-01-26 18:56:12] 2026-01-26 23:48:50,917 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 18:56:12] 2026-01-26 23:48:51,483 | INFO     | [monitor] cgroup control has ended
[2026-01-26 18:56:12] 2026-01-26 23:48:53,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140263511529280)>', '<ExcThread(monitor, started 140262860896000)>']
[2026-01-26 18:56:12] 2026-01-26 23:48:58,143 | INFO     | all workflow threads have been joined
[2026-01-26 18:56:12] 2026-01-26 23:48:58,143 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 18:56:12] 2026-01-26 23:48:58,143 | INFO     | traces error code: 0
[2026-01-26 18:56:12] 2026-01-26 23:48:58,143 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 18:56:12] 2026-01-26 23:49:11,351 | INFO     | PID=480497 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 18:56:12] 2026-01-26 23:49:11,363 | INFO     | .. there are 60 such processes running
[2026-01-26 18:56:12] 2026-01-26 23:49:11,364 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 18:56:12] 2026-01-26 23:49:11,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 18:56:12] 2026-01-26 23:49:11,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 18:56:12] 2026-01-26 23:49:11,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 18:56:12] 2026-01-26 23:49:11,364 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 18:56:12] 2026-01-26 23:49:11,364 | INFO     | [monitor] control thread has ended
[2026-01-26 18:56:12] 2026-01-26 23:49:11,582 [wrapper] ==== pilot stdout END ====
[2026-01-26 18:56:12] 2026-01-26 23:49:11,608 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 18:56:12] 2026-01-26 23:49:11,615 [wrapper] pilotpid: 480497
[2026-01-26 18:56:12] 2026-01-26 23:49:11,627 [wrapper] Pilot exit status: 0
[2026-01-26 18:56:12] 2026-01-26 23:49:11,755 [wrapper] pandaids: 6983772687
[2026-01-26 18:56:12] 2026-01-26 23:49:12,175 [wrapper] cleanup supervisor_pilot 1533151 480498
[2026-01-26 18:56:12] 2026-01-26 23:49:12,193 [wrapper] Test setup, not cleaning
[2026-01-26 18:56:12] 2026-01-26 23:49:12,204 [wrapper] apfmon messages muted
[2026-01-26 18:56:12] 2026-01-26 23:49:12,232 [wrapper] ==== wrapper stdout END ====
[2026-01-26 18:56:12] 2026-01-26 23:49:12,253 [wrapper] ==== wrapper stderr END ====
[2026-01-26 18:56:12]  *** Error codes and diagnostics ***
[2026-01-26 18:56:12]     "exeErrorCode": 0,
[2026-01-26 18:56:12]     "exeErrorDiag": "",
[2026-01-26 18:56:12]     "pilotErrorCode": 0,
[2026-01-26 18:56:12]     "pilotErrorDiag": "",
[2026-01-26 18:56:12]  *** Listing of results directory ***
[2026-01-26 18:56:12] total 677744
[2026-01-26 18:56:12] -rwx------. 1 boincer umatlas     36322 Jan 25 22:18 runpilot2-wrapper.sh
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 22:19 queuedata.json
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 22:19 pilot3.tar.gz
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas       100 Jan 26 17:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 18:56:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 17:10 run_atlas
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas       105 Jan 26 17:10 job.xml
[2026-01-26 18:56:12] -rw-r--r--. 2 boincer umatlas 501494860 Jan 26 17:10 EVNT.48318040._000036.pool.root.1
[2026-01-26 18:56:12] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 17:10 start_atlas.sh
[2026-01-26 18:56:12] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 17:10 shared
[2026-01-26 18:56:12] -rw-r--r--. 2 boincer umatlas    597760 Jan 26 17:10 input.tar.gz
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas         0 Jan 26 17:10 boinc_lockfile
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas      2533 Jan 26 17:10 pandaJob.out
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas        57 Jan 26 17:10 setup.sh.local
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas   1006433 Jan 26 17:12 agis_schedconf.cvmfs.json
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas   1516246 Jan 26 17:12 agis_ddmendpoints.agis.ALL.json
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas       429 Jan 26 17:12 workernode_map.json
[2026-01-26 18:56:12] drwx------. 5 boincer umatlas      4096 Jan 26 17:12 pilot3
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas 186318679 Jan 26 18:47 HITS.48318042._001811.pool.root.1
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas       530 Jan 26 18:47 boinc_task_state.xml
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas      1047 Jan 26 18:48 memory_monitor_summary.json
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas    372315 Jan 26 18:48 log.48318042._001811.job.log.tgz.1
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas      6351 Jan 26 18:48 heartbeat.json
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas        95 Jan 26 18:49 pilot_heartbeat.json
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas       892 Jan 26 18:49 pilotlog.txt
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas    757522 Jan 26 18:49 log.48318042._001811.job.log.1
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas       357 Jan 26 18:49 output.list
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas       620 Jan 26 18:49 runtime_log
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas   1146880 Jan 26 18:49 result.tar.gz
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas      9331 Jan 26 18:49 runtime_log.err
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas       654 Jan 26 18:49 aeFODmIIS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSy8KDm4L3cFo.diag
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas      7172 Jan 26 18:56 init_data.xml
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 18:56 boinc_mmap_file
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas        27 Jan 26 18:56 wrapper_checkpoint.txt
[2026-01-26 18:56:12] -rw-r--r--. 1 boincer umatlas     21547 Jan 26 18:56 stderr.txt
[2026-01-26 18:56:12] HITS file was successfully produced:
[2026-01-26 18:56:12] -rw-------. 1 boincer umatlas 186318679 Jan 26 18:47 shared/HITS.pool.root.1
[2026-01-26 18:56:12]  *** Contents of shared directory: ***
[2026-01-26 18:56:13] total 673424
[2026-01-26 18:56:13] -rw-r--r--. 2 boincer umatlas 501494860 Jan 26 17:10 ATLAS.root_0
[2026-01-26 18:56:13] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 17:10 start_atlas.sh
[2026-01-26 18:56:13] -rw-r--r--. 2 boincer umatlas    597760 Jan 26 17:10 input.tar.gz
[2026-01-26 18:56:13] -rw-------. 1 boincer umatlas 186318679 Jan 26 18:47 HITS.pool.root.1
[2026-01-26 18:56:13] -rw-------. 1 boincer umatlas   1146880 Jan 26 18:49 result.tar.gz
18:56:14 (457038): run_atlas exited; CPU time 24141.464945
18:56:14 (457038): called boinc_finish(0)

</stderr_txt>
]]>

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