Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:32:19 (931535): wrapper (7.7.26015): starting
17:32:19 (931535): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 17:32:19] Arguments: --nthreads 8
[2026-01-26 17:32:19] Threads: 8
[2026-01-26 17:32:19] Checking for CVMFS
[2026-01-26 17:32:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 17:32:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 17:32:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 17:32:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 17:32:20] 2.13.3.0 17216 118358 402336 155564 2 339 16549165 32935937 44300 16776704 0 1608380040 99.631 1582319745 50494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 17:32:20] CVMFS is ok
[2026-01-26 17:32:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 17:32:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 17:32:20] Further information can be found at the LHC@home message board.
[2026-01-26 17:32:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 17:32:20] Checking for apptainer binary...
[2026-01-26 17:32:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 17:32:20] Running /usr/bin/apptainer --version
[2026-01-26 17:32:20] apptainer version 1.4.5-2.el9
[2026-01-26 17:32:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 17:32:21] c7-9-14.aglt2.org
[2026-01-26 17:32:21] apptainer works
[2026-01-26 17:32:21] Set ATHENA_PROC_NUMBER=8
[2026-01-26 17:32:21] Set ATHENA_CORE_NUMBER=8
[2026-01-26 17:32:21] Starting ATLAS job with PandaID=6981424567
[2026-01-26 17:32:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:15:17]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:15:17]  filetype=log
[2026-01-26 19:15:17]  guid=f16c6bc0-9dd0-4efe-be75-18a712767443
[2026-01-26 19:15:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 19:15:17]  is_altstaged=None
[2026-01-26 19:15:17]  is_tar=False
[2026-01-26 19:15:17]  lfn=log.48310724._003714.job.log.tgz.1
[2026-01-26 19:15:17]  mtime=0
[2026-01-26 19:15:17]  protocol_id=None
[2026-01-26 19:15:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 19:15:17]  replicas=None
[2026-01-26 19:15:17]  scope=mc23_13p6TeV
[2026-01-26 19:15:17]  status=None
[2026-01-26 19:15:17]  status_code=0
[2026-01-26 19:15:17]  storage_token=
[2026-01-26 19:15:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6981424567/log.48310724._003714.job.log.tgz.1
[2026-01-26 19:15:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c7/20/log.48310724._003714.job.log.tgz.1
[2026-01-26 19:15:17]  workdir=None
[2026-01-26 19:15:17] ]
[2026-01-26 19:15:17] 2026-01-27 00:14:40,600 | INFO     | transferring file log.48310724._003714.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6981424567/log.48310724._003714.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 19:15:17] 2026-01-27 00:14:40,600 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6981424567/log.48310724._003714.job.log.tgz.1 /tmp/boinchome/slots/0/log.48310724._003714.job
[2026-01-26 19:15:17] 2026-01-27 00:14:40,683 | INFO     | adding to output.list: log.48310724._003714.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c7/20/log.48310724._003714.job.log.tg
[2026-01-26 19:15:17] 2026-01-27 00:14:40,684 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 19:15:17] 2026-01-27 00:14:40,684 | INFO     | summary of transferred files:
[2026-01-26 19:15:17] 2026-01-27 00:14:40,684 | INFO     |  -- lfn=log.48310724._003714.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 19:15:17] 2026-01-27 00:14:40,684 | INFO     | stage-out finished correctly
[2026-01-26 19:15:17] 2026-01-27 00:14:40,816 | WARNING  | process 975357 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 19:15:17] 2026-01-27 00:14:40,817 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6981424567/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:15:17] 2026-01-27 00:14:41,302 | INFO     | time since job start (6054s) is within the limit (349056.0s)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,004 | INFO     | number of running child processes to parent process 975357: 1
[2026-01-26 19:15:17] 2026-01-27 00:14:42,004 | INFO     | maximum number of monitored processes: 6
[2026-01-26 19:15:17] 2026-01-27 00:14:42,019 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 19:15:17] 2026-01-27 00:14:42,238 | INFO     | job 6981424567 has state=finished
[2026-01-26 19:15:17] 2026-01-27 00:14:42,238 | INFO     | preparing for final server update for job 6981424567 in state='finished'
[2026-01-26 19:15:17] 2026-01-27 00:14:42,238 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6981424567/jobReport.json
[2026-01-26 19:15:17] 2026-01-27 00:14:42,242 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-26 19:15:17] 2026-01-27 00:14:42,242 | INFO     | this job has now completed (state=finished)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,242 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,242 | INFO     | log transfer has been attempted: DONE
[2026-01-26 19:15:17] 2026-01-27 00:14:42,242 | INFO     | job 6981424567 has finished - writing final server update
[2026-01-26 19:15:17] 2026-01-27 00:14:42,242 | INFO     | total number of processed events: 400 (read)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,268 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6981424567/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,272 | INFO     | extracted standard info from prmon json
[2026-01-26 19:15:17] 2026-01-27 00:14:42,272 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 19:15:17] 2026-01-27 00:14:42,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 19:15:17] 2026-01-27 00:14:42,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 19:15:17] 2026-01-27 00:14:42,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 19:15:17] 2026-01-27 00:14:42,274 | INFO     | fitting pss+swap vs Time
[2026-01-26 19:15:17] 2026-01-27 00:14:42,274 | INFO     | sum of square deviations: 241432330.8260872
[2026-01-26 19:15:17] 2026-01-27 00:14:42,274 | INFO     | sum of deviations: -6966831690.847828
[2026-01-26 19:15:17] 2026-01-27 00:14:42,274 | INFO     | mean x: 1769469974.5434783
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | mean y: 2560725.836956522
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | intersect: 51062828638.063
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | chi2: 0.019996449158171052
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | current memory leak: -28.86 B/s (using 92 data points, chi2=0.02)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | ..............................
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . Timing measurements:
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . get job = 0 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . initial setup = 23 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . payload setup = 27 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . stage-in = 0 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . payload execution = 6011 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . stage-out = 1 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | . log creation = 0 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,275 | INFO     | ..............................
[2026-01-26 19:15:17] 2026-01-27 00:14:42,831 | INFO     | 
[2026-01-26 19:15:17] 2026-01-27 00:14:42,832 | INFO     | job summary report
[2026-01-26 19:15:17] 2026-01-27 00:14:42,832 | INFO     | --------------------------------------------------
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | PanDA job id: 6981424567
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | task id: 48310724
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | errors: (none)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | pilot state: finished 
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | transexitcode: 0
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | exeerrorcode: 0
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | exeerrordiag: 
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | exitcode: 0
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | exitmsg: OK
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | cpuconsumptiontime: 21874 s
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | nevents: 400
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | neventsw: 0
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | pid: 975357
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | pgrp: 975357
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | corecount: 8
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | event service: False
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | sizes: {0: 2283818, 1: 2283846, 2: 2284307, 12: 2284307, 6039: 2311007, 6040: 2311006, 6042: 2320188, 6043: 2320244, 6044: 2320438}
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | --------------------------------------------------
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | 
[2026-01-26 19:15:17] 2026-01-27 00:14:42,833 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-26 19:15:17] 2026-01-27 00:14:42,905 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:15:17] 2026-01-27 00:14:42,906 | INFO     | job 6981424567 has completed (purged errors)
[2026-01-26 19:15:17] 2026-01-27 00:14:42,907 | INFO     | overall cleanup function is called
[2026-01-26 19:15:17] 2026-01-27 00:14:43,914 | INFO     | --- collectZombieJob: --- 10, [975357]
[2026-01-26 19:15:17] 2026-01-27 00:14:43,914 | INFO     | zombie collector waiting for pid 975357
[2026-01-26 19:15:17] 2026-01-27 00:14:43,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:15:17] 2026-01-27 00:14:43,914 | INFO     | collected zombie processes
[2026-01-26 19:15:17] 2026-01-27 00:14:43,915 | INFO     | will attempt to kill all subprocesses of pid=975357
[2026-01-26 19:15:17] 2026-01-27 00:14:45,591 | INFO     | process IDs to be killed: [975357] (in reverse order)
[2026-01-26 19:15:17] 2026-01-27 00:14:46,141 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:15:17] 2026-01-27 00:14:46,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:15:17] 2026-01-27 00:14:46,241 | INFO     | did not find any defunct processes belonging to 975357
[2026-01-26 19:15:17] 2026-01-27 00:14:46,295 | INFO     | did not find any defunct processes belonging to 975357
[2026-01-26 19:15:17] 2026-01-27 00:14:46,296 | INFO     | ready for new job
[2026-01-26 19:15:17] 2026-01-27 00:14:46,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:15:17] 2026-01-27 00:14:46,308 | INFO     | **************************************
[2026-01-26 19:15:17] 2026-01-27 00:14:46,308 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:15:17] 2026-01-27 00:14:46,308 | INFO     | **************************************
[2026-01-26 19:15:17] 2026-01-27 00:14:46,308 | INFO     | 
[2026-01-26 19:15:17] 2026-01-27 00:14:46,321 | INFO     | architecture information:
[2026-01-26 19:15:17] 2026-01-27 00:14:46,325 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:15:17] 2026-01-27 00:14:46,467 | INFO     | cat /etc/os-release:
[2026-01-26 19:15:17] NAME="CentOS Linux"
[2026-01-26 19:15:17] VERSION="7 (Core)"
[2026-01-26 19:15:17] ID="centos"
[2026-01-26 19:15:17] ID_LIKE="rhel fedora"
[2026-01-26 19:15:17] VERSION_ID="7"
[2026-01-26 19:15:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:15:17] ANSI_COLOR="0;31"
[2026-01-26 19:15:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:15:17] HOME_URL="https://www.centos.org/"
[2026-01-26 19:15:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:15:17] 
[2026-01-26 19:15:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:15:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:15:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:15:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:15:17] 
[2026-01-26 19:15:17] 2026-01-27 00:14:46,468 | INFO     | **************************************
[2026-01-26 19:15:17] 2026-01-27 00:14:46,971 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-26 19:15:17] 2026-01-27 00:14:47,130 | INFO     | sufficient remaining disk space (69904367616 B)
[2026-01-26 19:15:17] 2026-01-27 00:14:47,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:15:17] 2026-01-27 00:14:47,130 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:15:17] 2026-01-27 00:14:47,130 | INFO     | update_server=False
[2026-01-26 19:15:17] 2026-01-27 00:14:47,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:15:17] 2026-01-27 00:14:47,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:15:17] 2026-01-27 00:14:47,525 | INFO     | all data control threads have been joined
[2026-01-26 19:15:17] 2026-01-27 00:14:47,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:15:17] 2026-01-27 00:14:47,627 | INFO     | all job control threads have been joined
[2026-01-26 19:15:17] 2026-01-27 00:14:48,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:15:17] 2026-01-27 00:14:48,041 | INFO     | aborting loop
[2026-01-26 19:15:17] 2026-01-27 00:14:48,137 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,149 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,155 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,228 | INFO     | all payload control threads have been joined
[2026-01-26 19:15:17] 2026-01-27 00:14:48,337 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:15:17] 2026-01-27 00:14:48,337 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,340 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,530 | INFO     | [data] control thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,554 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:48,635 | INFO     | [job] control thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,047 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,100 | INFO     | [job] validate thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,143 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,151 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,188 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,234 | INFO     | [payload] control thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:49,565 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:52,355 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:15:17] 2026-01-27 00:14:57,046 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:15:17] 2026-01-27 00:14:58,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761811117888)>', '<ExcThread(monitor, started 139761171814144)>']
[2026-01-26 19:15:17] 2026-01-27 00:15:03,088 | INFO     | all workflow threads have been joined
[2026-01-26 19:15:17] 2026-01-27 00:15:03,088 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:15:17] 2026-01-27 00:15:03,089 | INFO     | traces error code: 0
[2026-01-26 19:15:17] 2026-01-27 00:15:03,089 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:15:17] 2026-01-27 00:15:15,659 | INFO     | PID=951792 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 19:15:17] 2026-01-27 00:15:15,659 | INFO     | .. there are 45 such processes running
[2026-01-26 19:15:17] 2026-01-27 00:15:15,660 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:15:17] 2026-01-27 00:15:15,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:15:17] 2026-01-27 00:15:15,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:15:17] 2026-01-27 00:15:15,660 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:15:17] 2026-01-27 00:15:15,660 | INFO     | [monitor] control thread has ended
[2026-01-26 19:15:17] 2026-01-27 00:15:15,950 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:15:17] 2026-01-27 00:15:15,969 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:15:17] 2026-01-27 00:15:15,987 [wrapper] pilotpid: 951792
[2026-01-26 19:15:17] 2026-01-27 00:15:15,996 [wrapper] Pilot exit status: 0
[2026-01-26 19:15:17] 2026-01-27 00:15:16,091 [wrapper] pandaids: 6981424567
[2026-01-26 19:15:17] 2026-01-27 00:15:16,335 [wrapper] cleanup supervisor_pilot 1763910 951793
[2026-01-26 19:15:17] 2026-01-27 00:15:16,375 [wrapper] Test setup, not cleaning
[2026-01-26 19:15:17] 2026-01-27 00:15:16,400 [wrapper] apfmon messages muted
[2026-01-26 19:15:17] 2026-01-27 00:15:16,429 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:15:17] 2026-01-27 00:15:16,468 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:15:17]  *** Error codes and diagnostics ***
[2026-01-26 19:15:17]     "exeErrorCode": 0,
[2026-01-26 19:15:17]     "exeErrorDiag": "",
[2026-01-26 19:15:17]     "pilotErrorCode": 0,
[2026-01-26 19:15:17]     "pilotErrorDiag": "",
[2026-01-26 19:15:17]  *** Listing of results directory ***
[2026-01-26 19:15:17] total 661528
[2026-01-26 19:15:17] -rwx------. 1 boincer umatlas     36322 Jan 24 14:32 runpilot2-wrapper.sh
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas      5111 Jan 24 14:34 queuedata.json
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas    584422 Jan 24 14:36 pilot3.tar.gz
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas       100 Jan 26 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:15:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 17:32 run_atlas
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas       105 Jan 26 17:32 job.xml
[2026-01-26 19:15:17] -rw-r--r--. 2 boincer umatlas 492407810 Jan 26 17:32 EVNT.48310721._000075.pool.root.1
[2026-01-26 19:15:17] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 17:32 start_atlas.sh
[2026-01-26 19:15:17] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 17:32 shared
[2026-01-26 19:15:17] -rw-r--r--. 2 boincer umatlas    597764 Jan 26 17:32 input.tar.gz
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas         0 Jan 26 17:32 boinc_lockfile
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas      2533 Jan 26 17:32 pandaJob.out
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas        57 Jan 26 17:32 setup.sh.local
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas   1006433 Jan 26 17:33 agis_schedconf.cvmfs.json
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas   1516246 Jan 26 17:33 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas       431 Jan 26 17:33 workernode_map.json
[2026-01-26 19:15:17] drwx------. 5 boincer umatlas      4096 Jan 26 17:33 pilot3
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas      7170 Jan 26 19:09 init_data.xml
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas 178753670 Jan 26 19:13 HITS.48310724._003714.pool.root.1
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas       530 Jan 26 19:14 boinc_task_state.xml
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas      1034 Jan 26 19:14 memory_monitor_summary.json
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas    345731 Jan 26 19:14 log.48310724._003714.job.log.tgz.1
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas      6332 Jan 26 19:14 heartbeat.json
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 19:15 boinc_mmap_file
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas        27 Jan 26 19:15 wrapper_checkpoint.txt
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas        95 Jan 26 19:15 pilot_heartbeat.json
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas       822 Jan 26 19:15 pilotlog.txt
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas    805175 Jan 26 19:15 log.48310724._003714.job.log.1
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas       357 Jan 26 19:15 output.list
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas       620 Jan 26 19:15 runtime_log
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas   1167360 Jan 26 19:15 result.tar.gz
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas      9336 Jan 26 19:15 runtime_log.err
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas       651 Jan 26 19:15 fsiLDmQYy38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2q5KDmFqCOdm.diag
[2026-01-26 19:15:17] -rw-r--r--. 1 boincer umatlas     21363 Jan 26 19:15 stderr.txt
[2026-01-26 19:15:17] HITS file was successfully produced:
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas 178753670 Jan 26 19:13 shared/HITS.pool.root.1
[2026-01-26 19:15:17]  *** Contents of shared directory: ***
[2026-01-26 19:15:17] total 657184
[2026-01-26 19:15:17] -rw-r--r--. 2 boincer umatlas 492407810 Jan 26 17:32 ATLAS.root_0
[2026-01-26 19:15:17] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 17:32 start_atlas.sh
[2026-01-26 19:15:17] -rw-r--r--. 2 boincer umatlas    597764 Jan 26 17:32 input.tar.gz
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas 178753670 Jan 26 19:13 HITS.pool.root.1
[2026-01-26 19:15:17] -rw-------. 1 boincer umatlas   1167360 Jan 26 19:15 result.tar.gz
19:15:18 (931535): run_atlas exited; CPU time 22029.874369
19:15:18 (931535): called boinc_finish(0)

</stderr_txt>
]]>

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