Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:31:56 (284765): wrapper (7.7.26015): starting
02:31:56 (284765): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 02:31:56] Arguments: --nthreads 12
[2026-01-27 02:31:56] Threads: 12
[2026-01-27 02:31:56] Checking for CVMFS
[2026-01-27 02:31:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 02:31:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 02:31:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 02:31:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 02:31:59] 2.13.3.0 6794 272 44620 155578 0 50 5428878 6144000 3668 130560 0 900847 99.997 11076 339 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-27 02:31:59] CVMFS is ok
[2026-01-27 02:31:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 02:31:59] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-27 02:31:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-27 02:31:59] Further information can be found at the LHC@home message board.
[2026-01-27 02:31:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 02:31:59] Checking for apptainer binary...
[2026-01-27 02:31:59] apptainer is not installed, using version from CVMFS
[2026-01-27 02:31:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 02:32:00] XeonFire
[2026-01-27 02:32:00] apptainer works
[2026-01-27 02:32:00] Set ATHENA_PROC_NUMBER=12
[2026-01-27 02:32:00] Set ATHENA_CORE_NUMBER=12
[2026-01-27 02:32:00] Starting ATLAS job with PandaID=6983772793
[2026-01-27 02:32:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 03:45:45]  *** The last 200 lines of the pilot log: ***
[2026-01-27 03:45:45]  domain=
[2026-01-27 03:45:45]  filesize=366846
[2026-01-27 03:45:45]  filetype=log
[2026-01-27 03:45:45]  guid=8baf4654-a2f8-43ab-ab3c-e05b112e88e1
[2026-01-27 03:45:45]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 03:45:45]  is_altstaged=None
[2026-01-27 03:45:45]  is_tar=False
[2026-01-27 03:45:45]  lfn=log.48318042._001917.job.log.tgz.1
[2026-01-27 03:45:45]  mtime=0
[2026-01-27 03:45:45]  protocol_id=None
[2026-01-27 03:45:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 03:45:45]  replicas=None
[2026-01-27 03:45:45]  scope=mc23_13p6TeV
[2026-01-27 03:45:45]  status=None
[2026-01-27 03:45:45]  status_code=0
[2026-01-27 03:45:45]  storage_token=
[2026-01-27 03:45:45]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6983772793/log.48318042._001917.job.log.tgz.1
[2026-01-27 03:45:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/9e/log.48318042._001917.job.log.tgz.1
[2026-01-27 03:45:45]  workdir=None
[2026-01-27 03:45:45] ]
[2026-01-27 03:45:45] 2026-01-27 09:45:09,675 | INFO     | transferring file log.48318042._001917.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6983772793/log.48318042._001917.job.log.tgz.1 to /var/lib/boinc
[2026-01-27 03:45:45] 2026-01-27 09:45:09,675 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6983772793/log.48318042._001917.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.483180
[2026-01-27 03:45:45] 2026-01-27 09:45:09,696 | INFO     | adding to output.list: log.48318042._001917.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/9e/log.48318042._001917.job.log.tg
[2026-01-27 03:45:45] 2026-01-27 09:45:09,697 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 03:45:45] 2026-01-27 09:45:09,697 | INFO     | summary of transferred files:
[2026-01-27 03:45:45] 2026-01-27 09:45:09,697 | INFO     |  -- lfn=log.48318042._001917.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 03:45:45] 2026-01-27 09:45:09,697 | INFO     | stage-out finished correctly
[2026-01-27 03:45:45] 2026-01-27 09:45:11,570 | INFO     | time since job start (4361s) is within the limit (349056.0s)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,800 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 03:45:45] 2026-01-27 09:45:11,896 | INFO     | job 6983772793 has state=finished
[2026-01-27 03:45:45] 2026-01-27 09:45:11,896 | INFO     | preparing for final server update for job 6983772793 in state='finished'
[2026-01-27 03:45:45] 2026-01-27 09:45:11,897 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-6983772793/jobReport.json
[2026-01-27 03:45:45] 2026-01-27 09:45:11,899 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-01-27 03:45:45] 2026-01-27 09:45:11,900 | INFO     | this job has now completed (state=finished)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,900 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,900 | INFO     | log transfer has been attempted: DONE
[2026-01-27 03:45:45] 2026-01-27 09:45:11,900 | INFO     | job 6983772793 has finished - writing final server update
[2026-01-27 03:45:45] 2026-01-27 09:45:11,901 | INFO     | total number of processed events: 400 (read)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,917 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6983772793/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,918 | INFO     | extracted standard info from prmon json
[2026-01-27 03:45:45] 2026-01-27 09:45:11,918 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 03:45:45] 2026-01-27 09:45:11,918 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 03:45:45] 2026-01-27 09:45:11,918 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 03:45:45] 2026-01-27 09:45:11,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 03:45:45] 2026-01-27 09:45:11,920 | INFO     | fitting pss+swap vs Time
[2026-01-27 03:45:45] 2026-01-27 09:45:11,921 | INFO     | sum of square deviations: 81266640.0
[2026-01-27 03:45:45] 2026-01-27 09:45:11,921 | INFO     | sum of deviations: -8679294567.5
[2026-01-27 03:45:45] 2026-01-27 09:45:11,921 | INFO     | mean x: 1769505000.5
[2026-01-27 03:45:45] 2026-01-27 09:45:11,921 | INFO     | mean y: 2810079.078125
[2026-01-27 03:45:45] 2026-01-27 09:45:11,922 | INFO     | intersect: 188986323338.68546
[2026-01-27 03:45:45] 2026-01-27 09:45:11,922 | INFO     | chi2: 0.060521022975722386
[2026-01-27 03:45:45] 2026-01-27 09:45:11,922 | INFO     | current memory leak: -106.80 B/s (using 64 data points, chi2=0.06)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,922 | INFO     | could have reported an average CPU frequency of 2633 MHz (6 samples)
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | ..............................
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . Timing measurements:
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . get job = 0 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . initial setup = 10 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . payload setup = 7 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . stage-in = 0 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . payload execution = 4335 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . stage-out = 0 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | . log creation = 0 s
[2026-01-27 03:45:45] 2026-01-27 09:45:11,923 | INFO     | ..............................
[2026-01-27 03:45:45] 2026-01-27 09:45:12,025 | INFO     | 
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | job summary report
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | --------------------------------------------------
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | PanDA job id: 6983772793
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | task id: 48318042
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | errors: (none)
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 03:45:45] 2026-01-27 09:45:12,026 | INFO     | pilot state: finished 
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | transexitcode: 0
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | exeerrorcode: 0
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | exeerrordiag: 
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | exitcode: 0
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | exitmsg: OK
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | cpuconsumptiontime: 46727 s
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | nevents: 400
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | neventsw: 0
[2026-01-27 03:45:45] 2026-01-27 09:45:12,027 | INFO     | pid: 293999
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | pgrp: 293999
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | corecount: 12
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | event service: False
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | sizes: {0: 2283153, 1: 2284278, 12: 2284278, 4345: 2310071, 4348: 2319083, 4350: 2319461}
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | --------------------------------------------------
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | 
[2026-01-27 03:45:45] 2026-01-27 09:45:12,028 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-27 03:45:45] 2026-01-27 09:45:12,069 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,070 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,070 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,070 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,073 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 03:45:45] 2026-01-27 09:45:12,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,073 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 03:45:45] 2026-01-27 09:45:12,073 | INFO     | job 6983772793 has completed (purged errors)
[2026-01-27 03:45:45] 2026-01-27 09:45:12,074 | INFO     | overall cleanup function is called
[2026-01-27 03:45:45] 2026-01-27 09:45:13,083 | INFO     | --- collectZombieJob: --- 10, [293999]
[2026-01-27 03:45:45] 2026-01-27 09:45:13,084 | INFO     | zombie collector waiting for pid 293999
[2026-01-27 03:45:45] 2026-01-27 09:45:13,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 03:45:45] 2026-01-27 09:45:13,084 | INFO     | collected zombie processes
[2026-01-27 03:45:45] 2026-01-27 09:45:13,084 | INFO     | will attempt to kill all subprocesses of pid=293999
[2026-01-27 03:45:45] 2026-01-27 09:45:13,498 | INFO     | process IDs to be killed: [293999] (in reverse order)
[2026-01-27 03:45:45] 2026-01-27 09:45:13,660 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 03:45:45] 2026-01-27 09:45:13,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 03:45:45] 2026-01-27 09:45:13,671 | INFO     | did not find any defunct processes belonging to 293999
[2026-01-27 03:45:45] 2026-01-27 09:45:13,679 | INFO     | did not find any defunct processes belonging to 293999
[2026-01-27 03:45:45] 2026-01-27 09:45:13,679 | INFO     | ready for new job
[2026-01-27 03:45:45] 2026-01-27 09:45:13,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 03:45:45] 2026-01-27 09:45:13,681 | INFO     | **************************************
[2026-01-27 03:45:45] 2026-01-27 09:45:13,681 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 03:45:45] 2026-01-27 09:45:13,682 | INFO     | **************************************
[2026-01-27 03:45:45] 2026-01-27 09:45:13,682 | INFO     | 
[2026-01-27 03:45:45] 2026-01-27 09:45:13,687 | INFO     | architecture information:
[2026-01-27 03:45:45] 2026-01-27 09:45:13,689 | INFO     | executing command: cat /etc/os-release
[2026-01-27 03:45:45] 2026-01-27 09:45:13,711 | INFO     | cat /etc/os-release:
[2026-01-27 03:45:45] NAME="CentOS Linux"
[2026-01-27 03:45:45] VERSION="7 (Core)"
[2026-01-27 03:45:45] ID="centos"
[2026-01-27 03:45:45] ID_LIKE="rhel fedora"
[2026-01-27 03:45:45] VERSION_ID="7"
[2026-01-27 03:45:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 03:45:45] ANSI_COLOR="0;31"
[2026-01-27 03:45:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 03:45:45] HOME_URL="https://www.centos.org/"
[2026-01-27 03:45:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 03:45:45] 
[2026-01-27 03:45:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 03:45:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 03:45:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 03:45:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 03:45:45] 
[2026-01-27 03:45:45] 2026-01-27 09:45:13,712 | INFO     | **************************************
[2026-01-27 03:45:45] 2026-01-27 09:45:14,214 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-27 03:45:45] 2026-01-27 09:45:14,250 | INFO     | sufficient remaining disk space (1785754288128 B)
[2026-01-27 03:45:45] 2026-01-27 09:45:14,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 03:45:45] 2026-01-27 09:45:14,251 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 03:45:45] 2026-01-27 09:45:14,251 | INFO     | update_server=False
[2026-01-27 03:45:45] 2026-01-27 09:45:14,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 03:45:45] 2026-01-27 09:45:14,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 03:45:45] 2026-01-27 09:45:14,480 | INFO     | all job control threads have been joined
[2026-01-27 03:45:45] 2026-01-27 09:45:14,582 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 03:45:45] 2026-01-27 09:45:14,582 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 03:45:45] 2026-01-27 09:45:14,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:45:45] 2026-01-27 09:45:14,583 | INFO     | will abort loop
[2026-01-27 03:45:45] 2026-01-27 09:45:14,888 | INFO     | all data control threads have been joined
[2026-01-27 03:45:45] 2026-01-27 09:45:15,256 | INFO     | [job] retrieve thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 03:45:45] 2026-01-27 09:45:15,396 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,485 | INFO     | [job] control thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,492 | INFO     | all payload control threads have been joined
[2026-01-27 03:45:45] 2026-01-27 09:45:15,542 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,585 | INFO     | [job] job monitor thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,774 | INFO     | [data] copytool_in thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,787 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:15,894 | INFO     | [data] control thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:16,010 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:16,401 | INFO     | [payload] validate_post thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:16,497 | INFO     | [payload] control thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:16,666 | INFO     | [payload] failed_post thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:16,671 | INFO     | [job] validate thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:17,035 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:45:45] 2026-01-27 09:45:17,313 | INFO     | [data] copytool_out thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:18,040 | INFO     | [job] queue monitor thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:18,257 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 03:45:45] 2026-01-27 09:45:36,501 | INFO     | [monitor] cgroup control has ended
[2026-01-27 03:45:45] 2026-01-27 09:45:37,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130786926929728)>', '<ExcThread(monitor, started 130786242062080)>']
[2026-01-27 03:45:45] 2026-01-27 09:45:42,155 | INFO     | all workflow threads have been joined
[2026-01-27 03:45:45] 2026-01-27 09:45:42,155 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 03:45:45] 2026-01-27 09:45:42,156 | INFO     | traces error code: 0
[2026-01-27 03:45:45] 2026-01-27 09:45:42,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 03:45:45] 2026-01-27 09:45:45,173 | INFO     | PID=289186 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 03:45:45] 2026-01-27 09:45:45,174 | INFO     | .. there are 5 such processes running
[2026-01-27 03:45:45] 2026-01-27 09:45:45,174 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 03:45:45] 2026-01-27 09:45:45,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 03:45:45] 2026-01-27 09:45:45,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 03:45:45] 2026-01-27 09:45:45,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 03:45:45] 2026-01-27 09:45:45,174 | INFO     | [monitor] control thread has ended
[2026-01-27 03:45:45] 2026-01-27 09:45:45,285 [wrapper] ==== pilot stdout END ====
[2026-01-27 03:45:45] 2026-01-27 09:45:45,288 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 03:45:45] 2026-01-27 09:45:45,291 [wrapper] pilotpid: 289186
[2026-01-27 03:45:45] 2026-01-27 09:45:45,294 [wrapper] Pilot exit status: 0
[2026-01-27 03:45:45] 2026-01-27 09:45:45,306 [wrapper] pandaids: 6983772793
[2026-01-27 03:45:45] 2026-01-27 09:45:45,387 [wrapper] cleanup supervisor_pilot  355449 289187
[2026-01-27 03:45:45] 2026-01-27 09:45:45,393 [wrapper] Test setup, not cleaning
[2026-01-27 03:45:45] 2026-01-27 09:45:45,403 [wrapper] apfmon messages muted
[2026-01-27 03:45:45] 2026-01-27 09:45:45,407 [wrapper] ==== wrapper stdout END ====
[2026-01-27 03:45:45] 2026-01-27 09:45:45,414 [wrapper] ==== wrapper stderr END ====
[2026-01-27 03:45:45]  *** Error codes and diagnostics ***
[2026-01-27 03:45:45]     "exeErrorCode": 0,
[2026-01-27 03:45:45]     "exeErrorDiag": "",
[2026-01-27 03:45:45]     "pilotErrorCode": 0,
[2026-01-27 03:45:45]     "pilotErrorDiag": "",
[2026-01-27 03:45:45]  *** Listing of results directory ***
[2026-01-27 03:45:45] total 684796
[2026-01-27 03:45:45] -rwx------ 1 mark mark     36322 Jan 25 21:18 runpilot2-wrapper.sh
[2026-01-27 03:45:45] -rw-r--r-- 1 mark mark      5111 Jan 25 21:19 queuedata.json
[2026-01-27 03:45:45] -rw-r--r-- 1 mark mark    584422 Jan 25 21:19 pilot3.tar.gz
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark       100 Jan 27 02:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 03:45:45] -rwxr-xr-x 1 mark mark      7986 Jan 27 02:31 run_atlas
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark       105 Jan 27 02:31 job.xml
[2026-01-27 03:45:45] -rw-r--r-- 2 mark mark 504861404 Jan 27 02:31 EVNT.48318040._000039.pool.root.1
[2026-01-27 03:45:45] -rw-r--r-- 2 mark mark    597766 Jan 27 02:31 input.tar.gz
[2026-01-27 03:45:45] -rw-r--r-- 2 mark mark     15845 Jan 27 02:31 start_atlas.sh
[2026-01-27 03:45:45] drwxrwx--x 2 mark mark      4096 Jan 27 02:31 shared
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark      9265 Jan 27 02:31 init_data.xml
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark         0 Jan 27 02:31 boinc_setup_complete
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark         0 Jan 27 02:31 boinc_lockfile
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark      2529 Jan 27 02:32 pandaJob.out
[2026-01-27 03:45:45] -rw------- 1 mark mark   1003573 Jan 27 02:32 agis_schedconf.cvmfs.json
[2026-01-27 03:45:45] -rw------- 1 mark mark   1516246 Jan 27 02:32 agis_ddmendpoints.agis.ALL.json
[2026-01-27 03:45:45] -rw------- 1 mark mark       432 Jan 27 02:32 workernode_map.json
[2026-01-27 03:45:45] drwx------ 5 mark mark      4096 Jan 27 02:32 pilot3
[2026-01-27 03:45:45] -rw------- 1 mark mark 190412398 Jan 27 03:44 HITS.48318042._001917.pool.root.1
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark       530 Jan 27 03:44 boinc_task_state.xml
[2026-01-27 03:45:45] -rw------- 1 mark mark        95 Jan 27 03:45 pilot_heartbeat.json
[2026-01-27 03:45:45] -rw------- 1 mark mark      1034 Jan 27 03:45 memory_monitor_summary.json
[2026-01-27 03:45:45] -rw------- 1 mark mark    366846 Jan 27 03:45 log.48318042._001917.job.log.tgz.1
[2026-01-27 03:45:45] -rw------- 1 mark mark      6341 Jan 27 03:45 heartbeat.json
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark      8192 Jan 27 03:45 boinc_mmap_file
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark        27 Jan 27 03:45 wrapper_checkpoint.txt
[2026-01-27 03:45:45] -rw------- 1 mark mark       821 Jan 27 03:45 pilotlog.txt
[2026-01-27 03:45:45] -rw------- 1 mark mark    642261 Jan 27 03:45 log.48318042._001917.job.log.1
[2026-01-27 03:45:45] -rw------- 1 mark mark       357 Jan 27 03:45 output.list
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark       620 Jan 27 03:45 runtime_log
[2026-01-27 03:45:45] -rw------- 1 mark mark   1024000 Jan 27 03:45 result.tar.gz
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark      8886 Jan 27 03:45 runtime_log.err
[2026-01-27 03:45:45] -rw------- 1 mark mark       646 Jan 27 03:45 PzPMDmTIS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHP2KDmNdtzXn.diag
[2026-01-27 03:45:45] -rw-rw-r-- 1 mark mark     21202 Jan 27 03:45 stderr.txt
[2026-01-27 03:45:45] HITS file was successfully produced:
[2026-01-27 03:45:45] -rw------- 1 mark mark 190412398 Jan 27 03:44 shared/HITS.pool.root.1
[2026-01-27 03:45:45]  *** Contents of shared directory: ***
[2026-01-27 03:45:45] total 680592
[2026-01-27 03:45:45] -rw-r--r-- 2 mark mark 504861404 Jan 27 02:31 ATLAS.root_0
[2026-01-27 03:45:45] -rw-r--r-- 2 mark mark    597766 Jan 27 02:31 input.tar.gz
[2026-01-27 03:45:45] -rw-r--r-- 2 mark mark     15845 Jan 27 02:31 start_atlas.sh
[2026-01-27 03:45:45] -rw------- 1 mark mark 190412398 Jan 27 03:44 HITS.pool.root.1
[2026-01-27 03:45:45] -rw------- 1 mark mark   1024000 Jan 27 03:45 result.tar.gz
03:45:47 (284765): run_atlas exited; CPU time 46909.483942
03:45:47 (284765): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN