Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:30:06 (1400526): wrapper (7.7.26015): starting
12:30:06 (1400526): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 12:30:06] Arguments: --nthreads 4
[2026-01-27 12:30:06] Threads: 4
[2026-01-27 12:30:06] Checking for CVMFS
[2026-01-27 12:30:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:30:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:30:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:30:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:30:07] 2.9.2.0 3657875 9762 105848 155583 3 50 22352673 36864001 0 130560 0 5465921 99.989 323358 6432 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 12:30:07] CVMFS is ok
[2026-01-27 12:30:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:30:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 12:30:07] Further information can be found at the LHC@home message board.
[2026-01-27 12:30:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:30:07] Checking for apptainer binary...
[2026-01-27 12:30:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:30:07] Running /usr/bin/apptainer --version
[2026-01-27 12:30:07] apptainer version 1.4.1-1.1
[2026-01-27 12:30:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:30:07] magicA244a
[2026-01-27 12:30:07] apptainer works
[2026-01-27 12:30:07] Set ATHENA_PROC_NUMBER=4
[2026-01-27 12:30:07] Set ATHENA_CORE_NUMBER=4
[2026-01-27 12:30:07] Starting ATLAS job with PandaID=6983344433
[2026-01-27 12:30:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:35:28]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | job 6983344433 has completed (purged errors)
[2026-01-27 13:35:28] 2026-01-27 12:34:49,442 | INFO     | overall cleanup function is called
[2026-01-27 13:35:28] 2026-01-27 12:34:50,019 | WARNING  | process 1409131 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 13:35:28] 2026-01-27 12:34:50,048 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:35:28] 2026-01-27 12:34:50,084 | INFO     | number of running child processes to parent process 1409131: 1
[2026-01-27 13:35:28] 2026-01-27 12:34:50,084 | INFO     | maximum number of monitored processes: 6
[2026-01-27 13:35:28] 2026-01-27 12:34:50,084 | INFO     | aborting job monitoring since job object (job id=6983344433) has expired
[2026-01-27 13:35:28] 2026-01-27 12:34:50,449 | INFO     | --- collectZombieJob: --- 10, [1409131]
[2026-01-27 13:35:28] 2026-01-27 12:34:50,449 | INFO     | zombie collector waiting for pid 1409131
[2026-01-27 13:35:28] 2026-01-27 12:34:50,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:35:28] 2026-01-27 12:34:50,449 | INFO     | collected zombie processes
[2026-01-27 13:35:28] 2026-01-27 12:34:50,449 | INFO     | will attempt to kill all subprocesses of pid=1409131
[2026-01-27 13:35:28] 2026-01-27 12:34:50,491 | INFO     | process IDs to be killed: [1409131] (in reverse order)
[2026-01-27 13:35:28] 2026-01-27 12:34:50,518 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:35:28] 2026-01-27 12:34:50,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:35:28] 2026-01-27 12:34:50,519 | INFO     | did not find any defunct processes belonging to 1409131
[2026-01-27 13:35:28] 2026-01-27 12:34:50,520 | INFO     | did not find any defunct processes belonging to 1409131
[2026-01-27 13:35:28] 2026-01-27 12:34:50,520 | INFO     | ready for new job
[2026-01-27 13:35:28] 2026-01-27 12:34:50,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:35:28] 2026-01-27 12:34:50,521 | INFO     | **************************************
[2026-01-27 13:35:28] 2026-01-27 12:34:50,521 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:35:28] 2026-01-27 12:34:50,521 | INFO     | **************************************
[2026-01-27 13:35:28] 2026-01-27 12:34:50,521 | INFO     | 
[2026-01-27 13:35:28] 2026-01-27 12:34:50,522 | INFO     | architecture information:
[2026-01-27 13:35:28] 2026-01-27 12:34:50,522 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:35:28] 2026-01-27 12:34:50,531 | INFO     | cat /etc/os-release:
[2026-01-27 13:35:28] NAME="CentOS Linux"
[2026-01-27 13:35:28] VERSION="7 (Core)"
[2026-01-27 13:35:28] ID="centos"
[2026-01-27 13:35:28] ID_LIKE="rhel fedora"
[2026-01-27 13:35:28] VERSION_ID="7"
[2026-01-27 13:35:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:35:28] ANSI_COLOR="0;31"
[2026-01-27 13:35:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:35:28] HOME_URL="https://www.centos.org/"
[2026-01-27 13:35:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:35:28] 
[2026-01-27 13:35:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:35:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:35:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:35:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:35:28] 
[2026-01-27 13:35:28] 2026-01-27 12:34:50,531 | INFO     | **************************************
[2026-01-27 13:35:28] 2026-01-27 12:34:51,034 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:35:28] 2026-01-27 12:34:51,048 | INFO     | sufficient remaining disk space (334965506048 B)
[2026-01-27 13:35:28] 2026-01-27 12:34:51,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:35:28] 2026-01-27 12:34:51,048 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:35:28] 2026-01-27 12:34:51,048 | INFO     | update_server=False
[2026-01-27 13:35:28] 2026-01-27 12:34:51,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:35:28] 2026-01-27 12:34:51,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:35:28] 2026-01-27 12:34:51,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:35:28] 2026-01-27 12:34:51,049 | INFO     | will abort loop
[2026-01-27 13:35:28] 2026-01-27 12:34:51,149 | INFO     | all data control threads have been joined
[2026-01-27 13:35:28] 2026-01-27 12:34:52,054 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:52,054 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:52,055 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:52,155 | INFO     | [data] control thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:52,356 | INFO     | all payload control threads have been joined
[2026-01-27 13:35:28] 2026-01-27 12:34:52,389 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:35:28] 2026-01-27 12:34:52,396 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:52,559 | INFO     | all job control threads have been joined
[2026-01-27 13:35:28] 2026-01-27 12:34:53,004 | INFO     | [job] validate thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,118 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,119 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,298 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,362 | INFO     | [payload] control thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,400 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,471 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:53,565 | INFO     | [job] control thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:54,251 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:35:28] 2026-01-27 12:34:54,395 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:34:58,255 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:35:01,764 | INFO     | job.realtimelogging is not enabled
[2026-01-27 13:35:28] 2026-01-27 12:35:02,770 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:35:28] 2026-01-27 12:35:22,024 | INFO     | PID=1404631 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 13:35:28] 2026-01-27 12:35:22,024 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:35:28] 2026-01-27 12:35:22,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:35:28] 2026-01-27 12:35:22,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:35:28] 2026-01-27 12:35:22,152 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:35:28] 2026-01-27 12:35:23,718 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047416465216)>', '<ExcThread(monitor, started 140046761961216)>']
[2026-01-27 13:35:28] 2026-01-27 12:35:24,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:35:28] 2026-01-27 12:35:24,035 | INFO     | [monitor] control thread has ended
[2026-01-27 13:35:28] 2026-01-27 12:35:28,739 | INFO     | all workflow threads have been joined
[2026-01-27 13:35:28] 2026-01-27 12:35:28,739 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:35:28] 2026-01-27 12:35:28,739 | INFO     | traces error code: 0
[2026-01-27 13:35:28] 2026-01-27 12:35:28,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:35:28] 2026-01-27 12:35:28,790 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:35:28] 2026-01-27 12:35:28,792 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:35:28] 2026-01-27 12:35:28,795 [wrapper] pilotpid: 1404631
[2026-01-27 13:35:28] 2026-01-27 12:35:28,797 [wrapper] Pilot exit status: 0
[2026-01-27 13:35:28] 2026-01-27 12:35:28,805 [wrapper] pandaids: 6983344433
[2026-01-27 13:35:28] 2026-01-27 12:35:28,823 [wrapper] cleanup supervisor_pilot 1414204 1404632
[2026-01-27 13:35:28] 2026-01-27 12:35:28,826 [wrapper] Test setup, not cleaning
[2026-01-27 13:35:28] 2026-01-27 12:35:28,828 [wrapper] apfmon messages muted
[2026-01-27 13:35:28] 2026-01-27 12:35:28,831 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:35:28] 2026-01-27 12:35:28,834 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:35:28]  *** Error codes and diagnostics ***
[2026-01-27 13:35:28]     "exeErrorCode": 0,
[2026-01-27 13:35:28]     "exeErrorDiag": "",
[2026-01-27 13:35:28]     "pilotErrorCode": 0,
[2026-01-27 13:35:28]     "pilotErrorDiag": "",
[2026-01-27 13:35:28]  *** Listing of results directory ***
[2026-01-27 13:35:28] total 672924
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc    584422 Jan 25 19:47 pilot3.tar.gz
[2026-01-27 13:35:28] -rwx------ 1 boinc boinc     36322 Jan 25 19:52 runpilot2-wrapper.sh
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc      5111 Jan 25 19:56 queuedata.json
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:35:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:30 run_atlas
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:30 job.xml
[2026-01-27 13:35:28] -rw-r--r-- 2 boinc boinc 498141026 Jan 27 12:30 EVNT.48317869._000015.pool.root.1
[2026-01-27 13:35:28] -rw-r--r-- 2 boinc boinc    597745 Jan 27 12:30 input.tar.gz
[2026-01-27 13:35:28] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:30 start_atlas.sh
[2026-01-27 13:35:28] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:30 shared
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:30 boinc_setup_complete
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc      6438 Jan 27 12:30 init_data.xml
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:30 boinc_lockfile
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc      2511 Jan 27 12:30 pandaJob.out
[2026-01-27 13:35:28] -rw------- 1 boinc boinc   1002853 Jan 27 12:30 agis_schedconf.cvmfs.json
[2026-01-27 13:35:28] -rw------- 1 boinc boinc   1516246 Jan 27 12:30 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:35:28] -rw------- 1 boinc boinc       421 Jan 27 12:30 workernode_map.json
[2026-01-27 13:35:28] drwx------ 5 boinc boinc      4096 Jan 27 12:30 pilot3
[2026-01-27 13:35:28] -rw------- 1 boinc boinc 185352885 Jan 27 13:34 HITS.48317872._000715.pool.root.1
[2026-01-27 13:35:28] -rw------- 1 boinc boinc        95 Jan 27 13:34 pilot_heartbeat.json
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc       531 Jan 27 13:34 boinc_task_state.xml
[2026-01-27 13:35:28] -rw------- 1 boinc boinc      1013 Jan 27 13:34 memory_monitor_summary.json
[2026-01-27 13:35:28] -rw------- 1 boinc boinc    246053 Jan 27 13:34 log.48317872._000715.job.log.tgz.1
[2026-01-27 13:35:28] -rw------- 1 boinc boinc      6293 Jan 27 13:34 heartbeat.json
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc        27 Jan 27 13:35 wrapper_checkpoint.txt
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc      8192 Jan 27 13:35 boinc_mmap_file
[2026-01-27 13:35:28] -rw------- 1 boinc boinc      4822 Jan 27 13:35 pilotlog.txt
[2026-01-27 13:35:28] -rw------- 1 boinc boinc    580375 Jan 27 13:35 log.48317872._000715.job.log.1
[2026-01-27 13:35:28] -rw------- 1 boinc boinc       357 Jan 27 13:35 output.list
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc       620 Jan 27 13:35 runtime_log
[2026-01-27 13:35:28] -rw------- 1 boinc boinc    839680 Jan 27 13:35 result.tar.gz
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc      8916 Jan 27 13:35 runtime_log.err
[2026-01-27 13:35:28] -rw------- 1 boinc boinc       661 Jan 27 13:35 BoZLDmVOK48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPE8KDmZmrohn.diag
[2026-01-27 13:35:28] -rw-r--r-- 1 boinc boinc     12558 Jan 27 13:35 stderr.txt
[2026-01-27 13:35:28] HITS file was successfully produced:
[2026-01-27 13:35:28] -rw------- 1 boinc boinc 185352885 Jan 27 13:34 shared/HITS.pool.root.1
[2026-01-27 13:35:28]  *** Contents of shared directory: ***
[2026-01-27 13:35:28] total 668908
[2026-01-27 13:35:28] -rw-r--r-- 2 boinc boinc 498141026 Jan 27 12:30 ATLAS.root_0
[2026-01-27 13:35:28] -rw-r--r-- 2 boinc boinc    597745 Jan 27 12:30 input.tar.gz
[2026-01-27 13:35:28] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:30 start_atlas.sh
[2026-01-27 13:35:28] -rw------- 1 boinc boinc 185352885 Jan 27 13:34 HITS.pool.root.1
[2026-01-27 13:35:28] -rw------- 1 boinc boinc    839680 Jan 27 13:35 result.tar.gz
13:35:29 (1400526): run_atlas exited; CPU time 14463.503195
13:35:29 (1400526): called boinc_finish(0)

</stderr_txt>
]]>

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