Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:53:46 (2303910): wrapper (7.7.26015): starting
11:53:46 (2303910): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 11:53:46] Arguments: --nthreads 2
[2026-01-27 11:53:46] Threads: 2
[2026-01-27 11:53:46] Checking for CVMFS
[2026-01-27 11:53:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 11:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 11:53:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 11:53:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 11:53:47] 2.9.2.0 1326838 9498 62276 155581 1 50 25470896 36864001 0 130560 0 2917841 99.980 307104 4253 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 11:53:47] CVMFS is ok
[2026-01-27 11:53:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 11:53:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 11:53:47] Further information can be found at the LHC@home message board.
[2026-01-27 11:53:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 11:53:47] Checking for apptainer binary...
[2026-01-27 11:53:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 11:53:47] Running /usr/bin/apptainer --version
[2026-01-27 11:53:47] apptainer version 1.4.1-1.1
[2026-01-27 11:53:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 11:53:47] thA334a
[2026-01-27 11:53:47] apptainer works
[2026-01-27 11:53:47] Set ATHENA_PROC_NUMBER=2
[2026-01-27 11:53:47] Set ATHENA_CORE_NUMBER=2
[2026-01-27 11:53:47] Starting ATLAS job with PandaID=6983772605
[2026-01-27 11:53:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:58:19]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:58:19] 2026-01-27 12:57:54,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:58:19] 2026-01-27 12:57:54,239 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:58:19] 2026-01-27 12:57:54,239 | INFO     | job 6983772605 has completed (purged errors)
[2026-01-27 13:58:19] 2026-01-27 12:57:54,239 | INFO     | overall cleanup function is called
[2026-01-27 13:58:19] 2026-01-27 12:57:55,245 | INFO     | --- collectZombieJob: --- 10, [2312345]
[2026-01-27 13:58:19] 2026-01-27 12:57:55,246 | INFO     | zombie collector waiting for pid 2312345
[2026-01-27 13:58:19] 2026-01-27 12:57:55,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:58:19] 2026-01-27 12:57:55,247 | INFO     | collected zombie processes
[2026-01-27 13:58:19] 2026-01-27 12:57:55,247 | INFO     | will attempt to kill all subprocesses of pid=2312345
[2026-01-27 13:58:19] 2026-01-27 12:57:55,279 | INFO     | process IDs to be killed: [2312345] (in reverse order)
[2026-01-27 13:58:19] 2026-01-27 12:57:55,300 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:58:19] 2026-01-27 12:57:55,300 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:58:19] 2026-01-27 12:57:55,301 | INFO     | did not find any defunct processes belonging to 2312345
[2026-01-27 13:58:19] 2026-01-27 12:57:55,301 | INFO     | did not find any defunct processes belonging to 2312345
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | ready for new job
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | **************************************
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | **************************************
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | 
[2026-01-27 13:58:19] 2026-01-27 12:57:55,302 | INFO     | architecture information:
[2026-01-27 13:58:19] 2026-01-27 12:57:55,303 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:58:19] 2026-01-27 12:57:55,310 | INFO     | cat /etc/os-release:
[2026-01-27 13:58:19] NAME="CentOS Linux"
[2026-01-27 13:58:19] VERSION="7 (Core)"
[2026-01-27 13:58:19] ID="centos"
[2026-01-27 13:58:19] ID_LIKE="rhel fedora"
[2026-01-27 13:58:19] VERSION_ID="7"
[2026-01-27 13:58:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:58:19] ANSI_COLOR="0;31"
[2026-01-27 13:58:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:58:19] HOME_URL="https://www.centos.org/"
[2026-01-27 13:58:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:58:19] 
[2026-01-27 13:58:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:58:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:58:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:58:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:58:19] 
[2026-01-27 13:58:19] 2026-01-27 12:57:55,311 | INFO     | **************************************
[2026-01-27 13:58:19] 2026-01-27 12:57:55,811 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | INFO     | sufficient remaining disk space (497101570048 B)
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | INFO     | update_server=False
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:58:19] 2026-01-27 12:57:55,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:58:19] 2026-01-27 12:57:55,825 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 13:58:19] 2026-01-27 12:57:55,825 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:58:19] 2026-01-27 12:57:55,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:58:19] 2026-01-27 12:57:55,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:58:19] 2026-01-27 12:57:56,190 | INFO     | all job control threads have been joined
[2026-01-27 13:58:19] 2026-01-27 12:57:56,243 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:58:19] 2026-01-27 12:57:56,244 | INFO     | aborting loop
[2026-01-27 13:58:19] 2026-01-27 12:57:56,349 | INFO     | all data control threads have been joined
[2026-01-27 13:58:19] 2026-01-27 12:57:56,613 | INFO     | all payload control threads have been joined
[2026-01-27 13:58:19] 2026-01-27 12:57:56,830 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:56,831 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:56,860 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:56,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:58:19] 2026-01-27 12:57:56,976 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,196 | INFO     | [job] control thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,250 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,355 | INFO     | [data] control thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,405 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,619 | INFO     | [payload] control thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,796 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,832 | INFO     | [job] validate thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:57,893 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:58,029 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:58,873 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:57:59,831 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:58:06,762 | INFO     | job.realtimelogging is not enabled
[2026-01-27 13:58:19] 2026-01-27 12:58:07,768 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:58:19] 2026-01-27 12:58:13,058 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:58:19] 2026-01-27 12:58:14,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678819817280)>', '<ExcThread(monitor, started 139677948430080)>']
[2026-01-27 13:58:19] 2026-01-27 12:58:14,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:58:19] 2026-01-27 12:58:14,920 | INFO     | [monitor] control thread has ended
[2026-01-27 13:58:19] 2026-01-27 12:58:19,097 | INFO     | all workflow threads have been joined
[2026-01-27 13:58:19] 2026-01-27 12:58:19,099 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:58:19] 2026-01-27 12:58:19,099 | INFO     | traces error code: 0
[2026-01-27 13:58:19] 2026-01-27 12:58:19,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:58:19] 2026-01-27 12:58:19,143 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:58:19] 2026-01-27 12:58:19,146 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:58:19] 2026-01-27 12:58:19,148 [wrapper] pilotpid: 2307938
[2026-01-27 13:58:19] 2026-01-27 12:58:19,150 [wrapper] Pilot exit status: 0
[2026-01-27 13:58:19] 2026-01-27 12:58:19,156 [wrapper] pandaids: 6983772605
[2026-01-27 13:58:19] 2026-01-27 12:58:19,169 [wrapper] cleanup supervisor_pilot 2317567 2307939
[2026-01-27 13:58:19] 2026-01-27 12:58:19,171 [wrapper] Test setup, not cleaning
[2026-01-27 13:58:19] 2026-01-27 12:58:19,173 [wrapper] apfmon messages muted
[2026-01-27 13:58:19] 2026-01-27 12:58:19,175 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:58:19] 2026-01-27 12:58:19,177 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:58:19]  *** Error codes and diagnostics ***
[2026-01-27 13:58:19]     "exeErrorCode": 0,
[2026-01-27 13:58:19]     "exeErrorDiag": "",
[2026-01-27 13:58:19]     "pilotErrorCode": 0,
[2026-01-27 13:58:19]     "pilotErrorDiag": "",
[2026-01-27 13:58:19]  *** Listing of results directory ***
[2026-01-27 13:58:19] total 677020
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:16 pilot3.tar.gz
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:17 queuedata.json
[2026-01-27 13:58:19] -rwx------ 1 boinc boinc     36322 Jan 26 04:17 runpilot2-wrapper.sh
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc       100 Jan 27 11:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:58:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 11:53 run_atlas
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc       105 Jan 27 11:53 job.xml
[2026-01-27 13:58:19] -rw-r--r-- 2 boinc boinc 505325181 Jan 27 11:53 EVNT.48317869._000037.pool.root.1
[2026-01-27 13:58:19] -rw-r--r-- 2 boinc boinc    597754 Jan 27 11:53 input.tar.gz
[2026-01-27 13:58:19] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:53 start_atlas.sh
[2026-01-27 13:58:19] drwxrwx--x 2 boinc boinc      4096 Jan 27 11:53 shared
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:53 boinc_setup_complete
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc      6207 Jan 27 11:53 init_data.xml
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc         0 Jan 27 11:53 boinc_lockfile
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc      2514 Jan 27 11:53 pandaJob.out
[2026-01-27 13:58:19] -rw------- 1 boinc boinc   1002845 Jan 27 11:53 agis_schedconf.cvmfs.json
[2026-01-27 13:58:19] -rw------- 1 boinc boinc   1516246 Jan 27 11:53 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:58:19] -rw------- 1 boinc boinc       426 Jan 27 11:54 workernode_map.json
[2026-01-27 13:58:19] drwx------ 5 boinc boinc      4096 Jan 27 11:54 pilot3
[2026-01-27 13:58:19] -rw------- 1 boinc boinc 181245329 Jan 27 13:57 HITS.48317872._001860.pool.root.1
[2026-01-27 13:58:19] -rw------- 1 boinc boinc        95 Jan 27 13:57 pilot_heartbeat.json
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc       530 Jan 27 13:57 boinc_task_state.xml
[2026-01-27 13:58:19] -rw------- 1 boinc boinc      1011 Jan 27 13:57 memory_monitor_summary.json
[2026-01-27 13:58:19] -rw------- 1 boinc boinc    311624 Jan 27 13:57 log.48317872._001860.job.log.tgz.1
[2026-01-27 13:58:19] -rw------- 1 boinc boinc      6298 Jan 27 13:57 heartbeat.json
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc      8192 Jan 27 13:58 boinc_mmap_file
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc        27 Jan 27 13:58 wrapper_checkpoint.txt
[2026-01-27 13:58:19] -rw------- 1 boinc boinc      4624 Jan 27 13:58 pilotlog.txt
[2026-01-27 13:58:19] -rw------- 1 boinc boinc   1072622 Jan 27 13:58 log.48317872._001860.job.log.1
[2026-01-27 13:58:19] -rw------- 1 boinc boinc       357 Jan 27 13:58 output.list
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc       620 Jan 27 13:58 runtime_log
[2026-01-27 13:58:19] -rw------- 1 boinc boinc   1402880 Jan 27 13:58 result.tar.gz
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc      8901 Jan 27 13:58 runtime_log.err
[2026-01-27 13:58:19] -rw------- 1 boinc boinc       658 Jan 27 13:58 QXcLDmwHS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTK2KDmB5s5Qn.diag
[2026-01-27 13:58:19] -rw-r--r-- 1 boinc boinc     11029 Jan 27 13:58 stderr.txt
[2026-01-27 13:58:19] HITS file was successfully produced:
[2026-01-27 13:58:19] -rw------- 1 boinc boinc 181245329 Jan 27 13:57 shared/HITS.pool.root.1
[2026-01-27 13:58:19]  *** Contents of shared directory: ***
[2026-01-27 13:58:19] total 672464
[2026-01-27 13:58:19] -rw-r--r-- 2 boinc boinc 505325181 Jan 27 11:53 ATLAS.root_0
[2026-01-27 13:58:19] -rw-r--r-- 2 boinc boinc    597754 Jan 27 11:53 input.tar.gz
[2026-01-27 13:58:19] -rw-r--r-- 2 boinc boinc     15845 Jan 27 11:53 start_atlas.sh
[2026-01-27 13:58:19] -rw------- 1 boinc boinc 181245329 Jan 27 13:57 HITS.pool.root.1
[2026-01-27 13:58:19] -rw------- 1 boinc boinc   1402880 Jan 27 13:58 result.tar.gz
13:58:41 (2303910): run_atlas exited; CPU time 14407.339351
13:58:41 (2303910): called boinc_finish(0)

</stderr_txt>
]]>

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