Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:03 (989093): wrapper (7.7.26015): starting
12:06:03 (989093): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 12:06:03] Arguments: --nthreads 4
[2026-01-27 12:06:03] Threads: 4
[2026-01-27 12:06:03] Checking for CVMFS
[2026-01-27 12:06:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:06:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:06:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:06:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:06:04] 2.9.2.0 3075 5166 97028 155581 3 50 22879068 36864000 0 130560 0 2775844 99.988 193538 5669 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 12:06:04] CVMFS is ok
[2026-01-27 12:06:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:06:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 12:06:04] Further information can be found at the LHC@home message board.
[2026-01-27 12:06:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:06:04] Checking for apptainer binary...
[2026-01-27 12:06:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:06:04] Running /usr/bin/apptainer --version
[2026-01-27 12:06:04] apptainer version 1.4.1-1.1
[2026-01-27 12:06:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:06:04] thA383a
[2026-01-27 12:06:04] apptainer works
[2026-01-27 12:06:04] Set ATHENA_PROC_NUMBER=4
[2026-01-27 12:06:04] Set ATHENA_CORE_NUMBER=4
[2026-01-27 12:06:04] Starting ATLAS job with PandaID=6983306291
[2026-01-27 12:06:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:27:41]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:27:41] 2026-01-27 12:27:10,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | job 6983306291 has completed (purged errors)
[2026-01-27 13:27:41] 2026-01-27 12:27:10,072 | INFO     | overall cleanup function is called
[2026-01-27 13:27:41] 2026-01-27 12:27:11,079 | INFO     | --- collectZombieJob: --- 10, [997720]
[2026-01-27 13:27:41] 2026-01-27 12:27:11,079 | INFO     | zombie collector waiting for pid 997720
[2026-01-27 13:27:41] 2026-01-27 12:27:11,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:27:41] 2026-01-27 12:27:11,080 | INFO     | collected zombie processes
[2026-01-27 13:27:41] 2026-01-27 12:27:11,080 | INFO     | will attempt to kill all subprocesses of pid=997720
[2026-01-27 13:27:41] 2026-01-27 12:27:11,122 | INFO     | process IDs to be killed: [997720] (in reverse order)
[2026-01-27 13:27:41] 2026-01-27 12:27:11,155 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:27:41] 2026-01-27 12:27:11,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:27:41] 2026-01-27 12:27:11,157 | INFO     | did not find any defunct processes belonging to 997720
[2026-01-27 13:27:41] 2026-01-27 12:27:11,158 | INFO     | did not find any defunct processes belonging to 997720
[2026-01-27 13:27:41] 2026-01-27 12:27:11,158 | INFO     | ready for new job
[2026-01-27 13:27:41] 2026-01-27 12:27:11,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:27:41] 2026-01-27 12:27:11,159 | INFO     | **************************************
[2026-01-27 13:27:41] 2026-01-27 12:27:11,159 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:27:41] 2026-01-27 12:27:11,159 | INFO     | **************************************
[2026-01-27 13:27:41] 2026-01-27 12:27:11,159 | INFO     | 
[2026-01-27 13:27:41] 2026-01-27 12:27:11,160 | INFO     | architecture information:
[2026-01-27 13:27:41] 2026-01-27 12:27:11,160 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:27:41] 2026-01-27 12:27:11,174 | INFO     | cat /etc/os-release:
[2026-01-27 13:27:41] NAME="CentOS Linux"
[2026-01-27 13:27:41] VERSION="7 (Core)"
[2026-01-27 13:27:41] ID="centos"
[2026-01-27 13:27:41] ID_LIKE="rhel fedora"
[2026-01-27 13:27:41] VERSION_ID="7"
[2026-01-27 13:27:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:27:41] ANSI_COLOR="0;31"
[2026-01-27 13:27:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:27:41] HOME_URL="https://www.centos.org/"
[2026-01-27 13:27:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:27:41] 
[2026-01-27 13:27:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:27:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:27:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:27:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:27:41] 
[2026-01-27 13:27:41] 2026-01-27 12:27:11,174 | INFO     | **************************************
[2026-01-27 13:27:41] 2026-01-27 12:27:11,677 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:27:41] 2026-01-27 12:27:11,693 | INFO     | sufficient remaining disk space (234879975424 B)
[2026-01-27 13:27:41] 2026-01-27 12:27:11,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:27:41] 2026-01-27 12:27:11,694 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:27:41] 2026-01-27 12:27:11,694 | INFO     | update_server=False
[2026-01-27 13:27:41] 2026-01-27 12:27:11,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:27:41] 2026-01-27 12:27:11,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:27:41] 2026-01-27 12:27:11,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:27:41] 2026-01-27 12:27:12,284 | INFO     | all payload control threads have been joined
[2026-01-27 13:27:41] 2026-01-27 12:27:12,356 | INFO     | all data control threads have been joined
[2026-01-27 13:27:41] 2026-01-27 12:27:12,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:27:41] 2026-01-27 12:27:12,603 | INFO     | job.realtimelogging is not enabled
[2026-01-27 13:27:41] 2026-01-27 12:27:12,699 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:12,700 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:12,861 | INFO     | all job control threads have been joined
[2026-01-27 13:27:41] 2026-01-27 12:27:13,088 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,290 | INFO     | [payload] control thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,316 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,362 | INFO     | [data] control thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,549 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,601 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,609 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,717 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,806 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,866 | INFO     | [job] control thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:13,891 | INFO     | [job] validate thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:14,517 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:15,186 | WARNING  | process 997720 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 13:27:41] 2026-01-27 12:27:15,217 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:27:41] 2026-01-27 12:27:15,256 | INFO     | number of running child processes to parent process 997720: 1
[2026-01-27 13:27:41] 2026-01-27 12:27:15,256 | INFO     | maximum number of monitored processes: 6
[2026-01-27 13:27:41] 2026-01-27 12:27:15,256 | INFO     | aborting job monitoring since job object (job id=6983306291) has expired
[2026-01-27 13:27:41] 2026-01-27 12:27:15,256 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:27:41] 2026-01-27 12:27:15,256 | INFO     | will abort loop
[2026-01-27 13:27:41] 2026-01-27 12:27:15,700 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:16,258 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:27:41] 2026-01-27 12:27:22,943 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:27:41] 2026-01-27 12:27:23,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677087393600)>', '<ExcThread(monitor, started 139676094560000)>']
[2026-01-27 13:27:41] 2026-01-27 12:27:28,288 | INFO     | all workflow threads have been joined
[2026-01-27 13:27:41] 2026-01-27 12:27:28,288 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:27:41] 2026-01-27 12:27:28,288 | INFO     | traces error code: 0
[2026-01-27 13:27:41] 2026-01-27 12:27:28,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:27:41] 2026-01-27 12:27:41,660 | INFO     | PID=993195 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 13:27:41] 2026-01-27 12:27:41,661 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:27:41] 2026-01-27 12:27:41,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:27:41] 2026-01-27 12:27:41,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:27:41] 2026-01-27 12:27:41,661 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:27:41] 2026-01-27 12:27:41,661 | INFO     | [monitor] control thread has ended
[2026-01-27 13:27:41] 2026-01-27 12:27:41,739 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:27:41] 2026-01-27 12:27:41,743 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:27:41] 2026-01-27 12:27:41,747 [wrapper] pilotpid: 993195
[2026-01-27 13:27:41] 2026-01-27 12:27:41,752 [wrapper] Pilot exit status: 0
[2026-01-27 13:27:41] 2026-01-27 12:27:41,764 [wrapper] pandaids: 6983306291
[2026-01-27 13:27:41] 2026-01-27 12:27:41,785 [wrapper] cleanup supervisor_pilot 1003243 993196
[2026-01-27 13:27:41] 2026-01-27 12:27:41,789 [wrapper] Test setup, not cleaning
[2026-01-27 13:27:41] 2026-01-27 12:27:41,793 [wrapper] apfmon messages muted
[2026-01-27 13:27:41] 2026-01-27 12:27:41,796 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:27:41] 2026-01-27 12:27:41,800 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:27:41]  *** Error codes and diagnostics ***
[2026-01-27 13:27:41]     "exeErrorCode": 0,
[2026-01-27 13:27:41]     "exeErrorDiag": "",
[2026-01-27 13:27:41]     "pilotErrorCode": 0,
[2026-01-27 13:27:41]     "pilotErrorDiag": "",
[2026-01-27 13:27:41]  *** Listing of results directory ***
[2026-01-27 13:27:41] total 675932
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc    584422 Jan 25 19:47 pilot3.tar.gz
[2026-01-27 13:27:41] -rwx------ 1 boinc boinc     36322 Jan 25 19:49 runpilot2-wrapper.sh
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc      5111 Jan 25 19:52 queuedata.json
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:27:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:06 run_atlas
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:06 job.xml
[2026-01-27 13:27:41] -rw-r--r-- 2 boinc boinc 494821636 Jan 27 12:06 EVNT.48318040._000029.pool.root.1
[2026-01-27 13:27:41] -rw-r--r-- 2 boinc boinc    597765 Jan 27 12:06 input.tar.gz
[2026-01-27 13:27:41] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:06 start_atlas.sh
[2026-01-27 13:27:41] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:06 shared
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:06 boinc_setup_complete
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc      6377 Jan 27 12:06 init_data.xml
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:06 boinc_lockfile
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc      2533 Jan 27 12:06 pandaJob.out
[2026-01-27 13:27:41] -rw------- 1 boinc boinc   1002845 Jan 27 12:06 agis_schedconf.cvmfs.json
[2026-01-27 13:27:41] -rw------- 1 boinc boinc   1516246 Jan 27 12:06 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:27:41] -rw------- 1 boinc boinc       422 Jan 27 12:06 workernode_map.json
[2026-01-27 13:27:41] drwx------ 5 boinc boinc      4096 Jan 27 12:06 pilot3
[2026-01-27 13:27:41] -rw------- 1 boinc boinc 191388417 Jan 27 13:26 HITS.48318042._001449.pool.root.1
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc       530 Jan 27 13:26 boinc_task_state.xml
[2026-01-27 13:27:41] -rw------- 1 boinc boinc      1022 Jan 27 13:27 memory_monitor_summary.json
[2026-01-27 13:27:41] -rw------- 1 boinc boinc    299482 Jan 27 13:27 log.48318042._001449.job.log.tgz.1
[2026-01-27 13:27:41] -rw------- 1 boinc boinc      6311 Jan 27 13:27 heartbeat.json
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc      8192 Jan 27 13:27 boinc_mmap_file
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc        27 Jan 27 13:27 wrapper_checkpoint.txt
[2026-01-27 13:27:41] -rw------- 1 boinc boinc       746 Jan 27 13:27 pilotlog.txt
[2026-01-27 13:27:41] -rw------- 1 boinc boinc        95 Jan 27 13:27 pilot_heartbeat.json
[2026-01-27 13:27:41] -rw------- 1 boinc boinc    711609 Jan 27 13:27 log.48318042._001449.job.log.1
[2026-01-27 13:27:41] -rw------- 1 boinc boinc       357 Jan 27 13:27 output.list
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc       620 Jan 27 13:27 runtime_log
[2026-01-27 13:27:41] -rw------- 1 boinc boinc   1024000 Jan 27 13:27 result.tar.gz
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc      8901 Jan 27 13:27 runtime_log.err
[2026-01-27 13:27:41] -rw------- 1 boinc boinc       658 Jan 27 13:27 7EdNDmQMK48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXB8KDmxIjuGm.diag
[2026-01-27 13:27:41] -rw-r--r-- 1 boinc boinc     12330 Jan 27 13:27 stderr.txt
[2026-01-27 13:27:41] HITS file was successfully produced:
[2026-01-27 13:27:41] -rw------- 1 boinc boinc 191388417 Jan 27 13:26 shared/HITS.pool.root.1
[2026-01-27 13:27:41]  *** Contents of shared directory: ***
[2026-01-27 13:27:41] total 671740
[2026-01-27 13:27:41] -rw-r--r-- 2 boinc boinc 494821636 Jan 27 12:06 ATLAS.root_0
[2026-01-27 13:27:41] -rw-r--r-- 2 boinc boinc    597765 Jan 27 12:06 input.tar.gz
[2026-01-27 13:27:41] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:06 start_atlas.sh
[2026-01-27 13:27:41] -rw------- 1 boinc boinc 191388417 Jan 27 13:26 HITS.pool.root.1
[2026-01-27 13:27:41] -rw------- 1 boinc boinc   1024000 Jan 27 13:27 result.tar.gz
13:27:43 (989093): run_atlas exited; CPU time 18437.729107
13:27:43 (989093): called boinc_finish(0)

</stderr_txt>
]]>

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