Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:53:33 (908188): wrapper (7.7.26015): starting
12:53:33 (908188): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 12:53:33] Arguments: --nthreads 4
[2026-01-27 12:53:33] Threads: 4
[2026-01-27 12:53:33] Checking for CVMFS
[2026-01-27 12:53:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:53:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:53:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:53:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:53:34] 2.9.2.0 4135 3898 95804 155583 3 50 29430414 36864000 0 130560 0 1992339 99.986 149144 4487 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 12:53:34] CVMFS is ok
[2026-01-27 12:53:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:53:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 12:53:34] Further information can be found at the LHC@home message board.
[2026-01-27 12:53:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:53:34] Checking for apptainer binary...
[2026-01-27 12:53:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:53:34] Running /usr/bin/apptainer --version
[2026-01-27 12:53:34] apptainer version 1.4.1-1.1
[2026-01-27 12:53:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:53:34] atlasA237
[2026-01-27 12:53:34] apptainer works
[2026-01-27 12:53:34] Set ATHENA_PROC_NUMBER=4
[2026-01-27 12:53:34] Set ATHENA_CORE_NUMBER=4
[2026-01-27 12:53:34] Starting ATLAS job with PandaID=6983607993
[2026-01-27 12:53:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 15:38:21]  *** The last 200 lines of the pilot log: ***
[2026-01-27 15:38:21] 2026-01-27 14:37:49,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 15:38:21] 2026-01-27 14:37:49,604 | INFO     | collected zombie processes
[2026-01-27 15:38:21] 2026-01-27 14:37:49,604 | INFO     | will attempt to kill all subprocesses of pid=916893
[2026-01-27 15:38:21] 2026-01-27 14:37:49,671 | INFO     | process IDs to be killed: [916893] (in reverse order)
[2026-01-27 15:38:21] 2026-01-27 14:37:49,713 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 15:38:21] 2026-01-27 14:37:49,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 15:38:21] 2026-01-27 14:37:49,716 | INFO     | did not find any defunct processes belonging to 916893
[2026-01-27 15:38:21] 2026-01-27 14:37:49,718 | INFO     | did not find any defunct processes belonging to 916893
[2026-01-27 15:38:21] 2026-01-27 14:37:49,718 | INFO     | ready for new job
[2026-01-27 15:38:21] 2026-01-27 14:37:49,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 15:38:21] 2026-01-27 14:37:49,719 | INFO     | **************************************
[2026-01-27 15:38:21] 2026-01-27 14:37:49,719 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 15:38:21] 2026-01-27 14:37:49,719 | INFO     | **************************************
[2026-01-27 15:38:21] 2026-01-27 14:37:49,719 | INFO     | 
[2026-01-27 15:38:21] 2026-01-27 14:37:49,720 | INFO     | architecture information:
[2026-01-27 15:38:21] 2026-01-27 14:37:49,720 | INFO     | executing command: cat /etc/os-release
[2026-01-27 15:38:21] 2026-01-27 14:37:49,734 | INFO     | cat /etc/os-release:
[2026-01-27 15:38:21] NAME="CentOS Linux"
[2026-01-27 15:38:21] VERSION="7 (Core)"
[2026-01-27 15:38:21] ID="centos"
[2026-01-27 15:38:21] ID_LIKE="rhel fedora"
[2026-01-27 15:38:21] VERSION_ID="7"
[2026-01-27 15:38:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 15:38:21] ANSI_COLOR="0;31"
[2026-01-27 15:38:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 15:38:21] HOME_URL="https://www.centos.org/"
[2026-01-27 15:38:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 15:38:21] 
[2026-01-27 15:38:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 15:38:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 15:38:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 15:38:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 15:38:21] 
[2026-01-27 15:38:21] 2026-01-27 14:37:49,734 | INFO     | **************************************
[2026-01-27 15:38:21] 2026-01-27 14:37:50,237 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 15:38:21] 2026-01-27 14:37:50,253 | INFO     | sufficient remaining disk space (329434267648 B)
[2026-01-27 15:38:21] 2026-01-27 14:37:50,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 15:38:21] 2026-01-27 14:37:50,253 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 15:38:21] 2026-01-27 14:37:50,253 | INFO     | update_server=False
[2026-01-27 15:38:21] 2026-01-27 14:37:50,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 15:38:21] 2026-01-27 14:37:50,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 15:38:21] 2026-01-27 14:37:50,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 15:38:21] 2026-01-27 14:37:50,336 | INFO     | aborting loop
[2026-01-27 15:38:21] 2026-01-27 14:37:50,623 | INFO     | all job control threads have been joined
[2026-01-27 15:38:21] 2026-01-27 14:37:50,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 15:38:21] 2026-01-27 14:37:51,034 | INFO     | all data control threads have been joined
[2026-01-27 15:38:21] 2026-01-27 14:37:51,125 | INFO     | all payload control threads have been joined
[2026-01-27 15:38:21] 2026-01-27 14:37:51,256 | INFO     | [job] retrieve thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,256 | INFO     | [job] queue monitor thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,341 | INFO     | [job] job monitor thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,430 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,629 | INFO     | [job] control thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,712 | INFO     | [job] validate thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,867 | INFO     | [payload] validate_post thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,917 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:51,953 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:52,039 | INFO     | [data] control thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:52,111 | INFO     | [data] copytool_in thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:52,131 | INFO     | [payload] control thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:52,686 | INFO     | [payload] failed_post thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:52,893 | INFO     | [data] copytool_out thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:53,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 15:38:21] 2026-01-27 14:37:57,233 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:37:59,779 | INFO     | [monitor] cgroup control has ended
[2026-01-27 15:38:21] 2026-01-27 14:38:01,238 | INFO     | job.realtimelogging is not enabled
[2026-01-27 15:38:21] 2026-01-27 14:38:02,244 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 15:38:21] 2026-01-27 14:38:03,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715660830528)>', '<ExcThread(monitor, started 140714637768448)>']
[2026-01-27 15:38:21] 2026-01-27 14:38:08,397 | INFO     | all workflow threads have been joined
[2026-01-27 15:38:21] 2026-01-27 14:38:08,397 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 15:38:21] 2026-01-27 14:38:08,397 | INFO     | traces error code: 0
[2026-01-27 15:38:21] 2026-01-27 14:38:08,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 15:38:21] 2026-01-27 14:38:21,248 | INFO     | PID=912356 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 15:38:21] 2026-01-27 14:38:21,248 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 15:38:21] 2026-01-27 14:38:21,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 15:38:21] 2026-01-27 14:38:21,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 15:38:21] 2026-01-27 14:38:21,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 15:38:21] 2026-01-27 14:38:21,249 | INFO     | [monitor] control thread has ended
[2026-01-27 15:38:21] 2026-01-27 14:38:21,318 [wrapper] ==== pilot stdout END ====
[2026-01-27 15:38:21] 2026-01-27 14:38:21,322 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 15:38:21] 2026-01-27 14:38:21,325 [wrapper] pilotpid: 912356
[2026-01-27 15:38:21] 2026-01-27 14:38:21,329 [wrapper] Pilot exit status: 0
[2026-01-27 15:38:21] 2026-01-27 14:38:21,339 [wrapper] pandaids: 6983607993
[2026-01-27 15:38:21] 2026-01-27 14:38:21,366 [wrapper] cleanup supervisor_pilot  945092 912357
[2026-01-27 15:38:21] 2026-01-27 14:38:21,369 [wrapper] Test setup, not cleaning
[2026-01-27 15:38:21] 2026-01-27 14:38:21,373 [wrapper] apfmon messages muted
[2026-01-27 15:38:21] 2026-01-27 14:38:21,377 [wrapper] ==== wrapper stdout END ====
[2026-01-27 15:38:21] 2026-01-27 14:38:21,381 [wrapper] ==== wrapper stderr END ====
[2026-01-27 15:38:21]  *** Error codes and diagnostics ***
[2026-01-27 15:38:21]     "exeErrorCode": 0,
[2026-01-27 15:38:21]     "exeErrorDiag": "",
[2026-01-27 15:38:21]     "pilotErrorCode": 0,
[2026-01-27 15:38:21]     "pilotErrorDiag": "",
[2026-01-27 15:38:21]  *** Listing of results directory ***
[2026-01-27 15:38:21] total 473228
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 15:38:21] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 15:38:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:53 run_atlas
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:53 job.xml
[2026-01-27 15:38:21] -rw-r--r-- 2 boinc boinc 273797344 Jan 27 12:53 EVNT.48329782._000005.pool.root.1
[2026-01-27 15:38:21] -rw-r--r-- 2 boinc boinc    597790 Jan 27 12:53 input.tar.gz
[2026-01-27 15:38:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:53 start_atlas.sh
[2026-01-27 15:38:21] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:53 shared
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:53 boinc_setup_complete
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc      6371 Jan 27 12:53 init_data.xml
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:53 boinc_lockfile
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc      2695 Jan 27 12:53 pandaJob.out
[2026-01-27 15:38:21] -rw------- 1 boinc boinc   1002853 Jan 27 12:53 agis_schedconf.cvmfs.json
[2026-01-27 15:38:21] -rw------- 1 boinc boinc   1516246 Jan 27 12:53 agis_ddmendpoints.agis.ALL.json
[2026-01-27 15:38:21] -rw------- 1 boinc boinc       429 Jan 27 12:53 workernode_map.json
[2026-01-27 15:38:21] drwx------ 5 boinc boinc      4096 Jan 27 12:53 pilot3
[2026-01-27 15:38:21] -rw------- 1 boinc boinc 203377012 Jan 27 15:37 HITS.48329784._000123.pool.root.1
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc       529 Jan 27 15:37 boinc_task_state.xml
[2026-01-27 15:38:21] -rw------- 1 boinc boinc      1025 Jan 27 15:37 memory_monitor_summary.json
[2026-01-27 15:38:21] -rw------- 1 boinc boinc    351935 Jan 27 15:37 log.48329784._000123.job.log.tgz.1
[2026-01-27 15:38:21] -rw------- 1 boinc boinc        95 Jan 27 15:37 pilot_heartbeat.json
[2026-01-27 15:38:21] -rw------- 1 boinc boinc      6326 Jan 27 15:37 heartbeat.json
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc        27 Jan 27 15:38 wrapper_checkpoint.txt
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc      8192 Jan 27 15:38 boinc_mmap_file
[2026-01-27 15:38:21] -rw------- 1 boinc boinc       746 Jan 27 15:38 pilotlog.txt
[2026-01-27 15:38:21] -rw------- 1 boinc boinc   1392692 Jan 27 15:38 log.48329784._000123.job.log.1
[2026-01-27 15:38:21] -rw------- 1 boinc boinc       357 Jan 27 15:38 output.list
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc       620 Jan 27 15:38 runtime_log
[2026-01-27 15:38:21] -rw------- 1 boinc boinc   1761280 Jan 27 15:38 result.tar.gz
[2026-01-27 15:38:21] -rw------- 1 boinc boinc       662 Jan 27 15:38 wDaNDmONQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvI2KDm6afq6m.diag
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc      8911 Jan 27 15:38 runtime_log.err
[2026-01-27 15:38:21] -rw-r--r-- 1 boinc boinc     10497 Jan 27 15:38 stderr.txt
[2026-01-27 15:38:21] HITS file was successfully produced:
[2026-01-27 15:38:21] -rw------- 1 boinc boinc 203377012 Jan 27 15:37 shared/HITS.pool.root.1
[2026-01-27 15:38:21]  *** Contents of shared directory: ***
[2026-01-27 15:38:21] total 468324
[2026-01-27 15:38:21] -rw-r--r-- 2 boinc boinc 273797344 Jan 27 12:53 ATLAS.root_0
[2026-01-27 15:38:21] -rw-r--r-- 2 boinc boinc    597790 Jan 27 12:53 input.tar.gz
[2026-01-27 15:38:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:53 start_atlas.sh
[2026-01-27 15:38:21] -rw------- 1 boinc boinc 203377012 Jan 27 15:37 HITS.pool.root.1
[2026-01-27 15:38:21] -rw------- 1 boinc boinc   1761280 Jan 27 15:38 result.tar.gz
15:38:23 (908188): run_atlas exited; CPU time 38327.370741
15:38:23 (908188): called boinc_finish(0)

</stderr_txt>
]]>

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