Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:38:15 (4077283): wrapper (7.7.26015): starting
15:38:15 (4077283): wrapper: running run_atlas (--nthreads 9)
[2026-01-26 15:38:15] Arguments: --nthreads 9
[2026-01-26 15:38:15] Threads: 9
[2026-01-26 15:38:15] Checking for CVMFS
[2026-01-26 15:38:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 15:38:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 15:38:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 15:38:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 15:38:17] 2.13.3.0 10299 118379 710492 155561 0 644 31265925 32935936 48677 16776704 0 1095833251 99.774 606288787 28902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 15:38:17] CVMFS is ok
[2026-01-26 15:38:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 15:38:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 15:38:17] Further information can be found at the LHC@home message board.
[2026-01-26 15:38:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 15:38:17] Checking for apptainer binary...
[2026-01-26 15:38:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 15:38:17] Running /usr/bin/apptainer --version
[2026-01-26 15:38:17] apptainer version 1.4.5-2.el9
[2026-01-26 15:38:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 15:38:17] c-3-40.aglt2.org
[2026-01-26 15:38:17] apptainer works
[2026-01-26 15:38:17] Set ATHENA_PROC_NUMBER=9
[2026-01-26 15:38:17] Set ATHENA_CORE_NUMBER=9
[2026-01-26 15:38:17] Starting ATLAS job with PandaID=6982978260
[2026-01-26 15:38:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:09 (4077283): BOINC client no longer exists - exiting
19:20:09 (4077283): timer handler: client dead, exiting
19:31:17 (1691549): wrapper (7.7.26015): starting
19:31:17 (1691549): wrapper: running run_atlas (--nthreads 9)
[2026-01-26 19:31:17] Arguments: --nthreads 9
[2026-01-26 19:31:17] Threads: 9
[2026-01-26 19:31:17] This job has been restarted, cleaning up previous attempt
[2026-01-26 19:31:18] Checking for CVMFS
[2026-01-26 19:31:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:31:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:31:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:31:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:31:19] 2.13.3.0 10299 118612 698564 155567 3 109 23131484 32935936 41225 16776704 0 1098767302 99.774 609202422 28892 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 19:31:19] CVMFS is ok
[2026-01-26 19:31:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:31:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:31:19] Further information can be found at the LHC@home message board.
[2026-01-26 19:31:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:31:19] Checking for apptainer binary...
[2026-01-26 19:31:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:31:19] Running /usr/bin/apptainer --version
[2026-01-26 19:31:19] apptainer version 1.4.5-2.el9
[2026-01-26 19:31:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:31:19] c-3-40.aglt2.org
[2026-01-26 19:31:19] apptainer works
[2026-01-26 19:31:19] Set ATHENA_PROC_NUMBER=9
[2026-01-26 19:31:19] Set ATHENA_CORE_NUMBER=9
[2026-01-26 19:31:20] Starting ATLAS job with PandaID=6982978260
[2026-01-26 19:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 06:27:36]  *** The last 200 lines of the pilot log: ***
[2026-01-27 06:27:36] 2026-01-27 11:26:56,797 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6982978260/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 06:27:36] 2026-01-27 11:26:56,857 | INFO     | extracted standard info from prmon json
[2026-01-27 06:27:36] 2026-01-27 11:26:56,857 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 06:27:36] 2026-01-27 11:26:56,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 06:27:36] 2026-01-27 11:26:56,890 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 06:27:36] 2026-01-27 11:26:56,890 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 06:27:36] 2026-01-27 11:26:57,057 | INFO     | fitting pss+swap vs Time
[2026-01-27 06:27:36] 2026-01-27 11:26:57,417 | INFO     | sum of square deviations: 82435789308.07451
[2026-01-27 06:27:36] 2026-01-27 11:26:57,467 | INFO     | sum of deviations: 6819487597.135376
[2026-01-27 06:27:36] 2026-01-27 11:26:57,467 | INFO     | mean x: 1769493573.208398
[2026-01-27 06:27:36] 2026-01-27 11:26:57,468 | INFO     | mean y: 2536228.7527216175
[2026-01-27 06:27:36] 2026-01-27 11:26:57,468 | INFO     | intersect: -143844846.46946317
[2026-01-27 06:27:36] 2026-01-27 11:26:57,468 | INFO     | chi2: 4.971406365355631
[2026-01-27 06:27:36] 2026-01-27 11:26:57,469 | INFO     | sum of square deviations: 80527692075.35579
[2026-01-27 06:27:36] 2026-01-27 11:26:57,622 | INFO     | sum of deviations: 144095549227.75397
[2026-01-27 06:27:36] 2026-01-27 11:26:57,623 | INFO     | mean x: 1769493420.7100313
[2026-01-27 06:27:36] 2026-01-27 11:26:57,623 | INFO     | mean y: 2547165.804075235
[2026-01-27 06:27:36] 2026-01-27 11:26:57,623 | INFO     | intersect: -3163768914.302987
[2026-01-27 06:27:36] 2026-01-27 11:26:57,624 | INFO     | chi2: 2.4069911306790166
[2026-01-27 06:27:36] 2026-01-27 11:26:57,624 | INFO     | current chi2=2.4069911306790166 (change=51.58329547444204 %)
[2026-01-27 06:27:36] 2026-01-27 11:26:57,878 | INFO     | sum of square deviations: 78649269817.6334
[2026-01-27 06:27:36] 2026-01-27 11:26:58,123 | INFO     | monitor loop #2029: job 0:6982978260 is in state 'finished'
[2026-01-27 06:27:36] 2026-01-27 11:26:58,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 06:27:36] 2026-01-27 11:26:58,288 | INFO     | sum of deviations: 142915463172.42358
[2026-01-27 06:27:36] 2026-01-27 11:26:58,289 | INFO     | mean x: 1769493268.2116904
[2026-01-27 06:27:36] 2026-01-27 11:26:58,289 | INFO     | mean y: 2547069.9968404425
[2026-01-27 06:27:36] 2026-01-27 11:26:58,289 | INFO     | intersect: -3212841332.124867
[2026-01-27 06:27:36] 2026-01-27 11:26:58,290 | INFO     | chi2: 2.4072491285123867
[2026-01-27 06:27:36] 2026-01-27 11:26:58,290 | INFO     | current chi2=2.4072491285123867 (change=-0.010718686499576894 %)
[2026-01-27 06:27:36] 2026-01-27 11:26:58,290 | INFO     | right removable region: 632
[2026-01-27 06:27:36] 2026-01-27 11:26:58,291 | INFO     | sum of square deviations: 80527610335.35582
[2026-01-27 06:27:36] 2026-01-27 11:26:58,517 | INFO     | sum of deviations: -142994246789.40753
[2026-01-27 06:27:36] 2026-01-27 11:26:58,518 | INFO     | mean x: 1769493725.7100313
[2026-01-27 06:27:36] 2026-01-27 11:26:58,518 | INFO     | mean y: 2548177.3761755484
[2026-01-27 06:27:36] 2026-01-27 11:26:58,518 | INFO     | intersect: 3144668270.754833
[2026-01-27 06:27:36] 2026-01-27 11:26:58,519 | INFO     | chi2: 2.728367078611652
[2026-01-27 06:27:36] 2026-01-27 11:26:58,519 | INFO     | current chi2=2.728367078611652 (change=45.118807876481505 %)
[2026-01-27 06:27:36] 2026-01-27 11:26:58,520 | INFO     | sum of square deviations: 78649106337.63336
[2026-01-27 06:27:36] 2026-01-27 11:26:58,708 | INFO     | sum of deviations: -169499795542.74567
[2026-01-27 06:27:36] 2026-01-27 11:26:58,708 | INFO     | mean x: 1769493878.2116904
[2026-01-27 06:27:36] 2026-01-27 11:26:58,708 | INFO     | mean y: 2550323.1548183253
[2026-01-27 06:27:36] 2026-01-27 11:26:58,708 | INFO     | intersect: 3816056471.3805175
[2026-01-27 06:27:36] 2026-01-27 11:26:58,771 | INFO     | chi2: 2.6401194191364237
[2026-01-27 06:27:36] 2026-01-27 11:26:58,772 | INFO     | current chi2=2.6401194191364237 (change=3.2344496518457335 %)
[2026-01-27 06:27:36] 2026-01-27 11:26:58,772 | INFO     | left removable region: 20
[2026-01-27 06:27:36] 2026-01-27 11:26:58,811 | INFO     | sum of square deviations: 71078484784.95941
[2026-01-27 06:27:36] 2026-01-27 11:26:58,905 | INFO     | sum of deviations: -20390217876.26471
[2026-01-27 06:27:36] 2026-01-27 11:26:58,905 | INFO     | mean x: 1769493847.7140522
[2026-01-27 06:27:36] 2026-01-27 11:26:58,905 | INFO     | mean y: 2560515.1470588236
[2026-01-27 06:27:36] 2026-01-27 11:26:58,905 | INFO     | intersect: 510173545.9362899
[2026-01-27 06:27:36] 2026-01-27 11:26:58,906 | INFO     | chi2: 0.03476511980708823
[2026-01-27 06:27:36] 2026-01-27 11:26:58,906 | INFO     | current memory leak: -0.29 B/s (using 612 data points, chi2=0.03)
[2026-01-27 06:27:36] 2026-01-27 11:26:58,907 | INFO     | could have reported an average CPU frequency of 2999 MHz (25 samples)
[2026-01-27 06:27:36] 2026-01-27 11:26:58,907 | INFO     | ..............................
[2026-01-27 06:27:36] 2026-01-27 11:26:58,907 | INFO     | . Timing measurements:
[2026-01-27 06:27:36] 2026-01-27 11:26:58,907 | INFO     | . get job = 0 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,907 | INFO     | . initial setup = 3 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,907 | INFO     | . payload setup = 32 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,908 | INFO     | . stage-in = 0 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,942 | INFO     | . payload execution = 39232 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,942 | INFO     | . stage-out = 4 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,942 | INFO     | . log creation = 0 s
[2026-01-27 06:27:36] 2026-01-27 11:26:58,942 | INFO     | ..............................
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | 
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | job summary report
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | --------------------------------------------------
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | PanDA job id: 6982978260
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | task id: 48310724
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | errors: (none)
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | pilot state: finished 
[2026-01-27 06:27:36] 2026-01-27 11:27:00,625 | INFO     | transexitcode: 0
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | exeerrorcode: 0
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | exeerrordiag: 
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | exitcode: 0
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | exitmsg: OK
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | cpuconsumptiontime: 44733 s
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | nevents: 400
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | neventsw: 0
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | pid: 1710498
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | pgrp: 1710498
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | corecount: 9
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | event service: False
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | sizes: {0: 2283761, 1: 2284278, 2: 2284278, 39269: 2325780, 39270: 2325779, 39275: 2334833, 39276: 2335017, 39284: 2335275}
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | --------------------------------------------------
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | 
[2026-01-27 06:27:36] 2026-01-27 11:27:00,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-27 06:27:36] 2026-01-27 11:27:00,721 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 06:27:36] 2026-01-27 11:27:00,723 | INFO     | job 6982978260 has completed (purged errors)
[2026-01-27 06:27:36] 2026-01-27 11:27:00,724 | INFO     | overall cleanup function is called
[2026-01-27 06:27:36] 2026-01-27 11:27:01,003 | INFO     | PID=1703492 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-27 06:27:36] 2026-01-27 11:27:01,004 | INFO     | .. there are 64 such processes running
[2026-01-27 06:27:36] 2026-01-27 11:27:01,760 | INFO     | --- collectZombieJob: --- 10, [1710498]
[2026-01-27 06:27:36] 2026-01-27 11:27:01,760 | INFO     | zombie collector waiting for pid 1710498
[2026-01-27 06:27:36] 2026-01-27 11:27:01,760 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 06:27:36] 2026-01-27 11:27:01,760 | INFO     | collected zombie processes
[2026-01-27 06:27:36] 2026-01-27 11:27:01,760 | INFO     | will attempt to kill all subprocesses of pid=1710498
[2026-01-27 06:27:36] 2026-01-27 11:27:08,041 | INFO     | process IDs to be killed: [1710498] (in reverse order)
[2026-01-27 06:27:36] 2026-01-27 11:27:08,450 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 06:27:36] 2026-01-27 11:27:08,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 06:27:36] 2026-01-27 11:27:08,491 | INFO     | did not find any defunct processes belonging to 1710498
[2026-01-27 06:27:36] 2026-01-27 11:27:08,522 | INFO     | did not find any defunct processes belonging to 1710498
[2026-01-27 06:27:36] 2026-01-27 11:27:08,523 | INFO     | ready for new job
[2026-01-27 06:27:36] 2026-01-27 11:27:08,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 06:27:36] 2026-01-27 11:27:08,599 | INFO     | **************************************
[2026-01-27 06:27:36] 2026-01-27 11:27:08,599 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 06:27:36] 2026-01-27 11:27:08,599 | INFO     | **************************************
[2026-01-27 06:27:36] 2026-01-27 11:27:08,599 | INFO     | 
[2026-01-27 06:27:36] 2026-01-27 11:27:08,617 | INFO     | architecture information:
[2026-01-27 06:27:36] 2026-01-27 11:27:08,635 | INFO     | executing command: cat /etc/os-release
[2026-01-27 06:27:36] 2026-01-27 11:27:08,692 | INFO     | cat /etc/os-release:
[2026-01-27 06:27:36] NAME="CentOS Linux"
[2026-01-27 06:27:36] VERSION="7 (Core)"
[2026-01-27 06:27:36] ID="centos"
[2026-01-27 06:27:36] ID_LIKE="rhel fedora"
[2026-01-27 06:27:36] VERSION_ID="7"
[2026-01-27 06:27:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 06:27:36] ANSI_COLOR="0;31"
[2026-01-27 06:27:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 06:27:36] HOME_URL="https://www.centos.org/"
[2026-01-27 06:27:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 06:27:36] 
[2026-01-27 06:27:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 06:27:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 06:27:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 06:27:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 06:27:36] 
[2026-01-27 06:27:36] 2026-01-27 11:27:08,692 | INFO     | **************************************
[2026-01-27 06:27:36] 2026-01-27 11:27:09,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-27 06:27:36] 2026-01-27 11:27:09,345 | INFO     | sufficient remaining disk space (68058873856 B)
[2026-01-27 06:27:36] 2026-01-27 11:27:09,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 06:27:36] 2026-01-27 11:27:09,346 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 06:27:36] 2026-01-27 11:27:09,346 | INFO     | update_server=False
[2026-01-27 06:27:36] 2026-01-27 11:27:09,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 06:27:36] 2026-01-27 11:27:09,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 06:27:36] 2026-01-27 11:27:09,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 06:27:36] 2026-01-27 11:27:09,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 06:27:36] 2026-01-27 11:27:09,854 | INFO     | aborting loop
[2026-01-27 06:27:36] 2026-01-27 11:27:10,077 | INFO     | all payload control threads have been joined
[2026-01-27 06:27:36] 2026-01-27 11:27:10,099 | INFO     | all data control threads have been joined
[2026-01-27 06:27:36] 2026-01-27 11:27:10,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 06:27:36] 2026-01-27 11:27:10,352 | INFO     | [job] retrieve thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:10,358 | INFO     | [job] queue monitor thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:10,860 | INFO     | [job] job monitor thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:10,909 | INFO     | all job control threads have been joined
[2026-01-27 06:27:36] 2026-01-27 11:27:11,089 | INFO     | [payload] control thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,105 | INFO     | [data] control thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,359 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,451 | INFO     | [payload] validate_post thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,558 | INFO     | [payload] failed_post thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,799 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,799 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,835 | INFO     | [data] copytool_in thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,863 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,863 | INFO     | [job] validate thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:11,915 | INFO     | [job] control thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:12,366 | INFO     | [data] copytool_out thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:13,367 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 06:27:36] 2026-01-27 11:27:28,682 | INFO     | [monitor] cgroup control has ended
[2026-01-27 06:27:36] 2026-01-27 11:27:29,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140437001754432)>', '<ExcThread(monitor, started 140436370880256)>']
[2026-01-27 06:27:36] 2026-01-27 11:27:34,259 | INFO     | all workflow threads have been joined
[2026-01-27 06:27:36] 2026-01-27 11:27:34,259 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 06:27:36] 2026-01-27 11:27:34,259 | INFO     | traces error code: 0
[2026-01-27 06:27:36] 2026-01-27 11:27:34,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 06:27:36] 2026-01-27 11:27:35,125 | INFO     | PID=1703492 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 06:27:36] 2026-01-27 11:27:35,126 | INFO     | .. there are 64 such processes running
[2026-01-27 06:27:36] 2026-01-27 11:27:35,127 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 06:27:36] 2026-01-27 11:27:35,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 06:27:36] 2026-01-27 11:27:35,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 06:27:36] 2026-01-27 11:27:35,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 06:27:36] 2026-01-27 11:27:35,127 | INFO     | [monitor] control thread has ended
[2026-01-27 06:27:36] 2026-01-27 11:27:35,435 [wrapper] ==== pilot stdout END ====
[2026-01-27 06:27:36] 2026-01-27 11:27:35,472 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 06:27:36] 2026-01-27 11:27:35,498 [wrapper] pilotpid: 1703492
[2026-01-27 06:27:36] 2026-01-27 11:27:35,530 [wrapper] Pilot exit status: 0
[2026-01-27 06:27:36] 2026-01-27 11:27:35,667 [wrapper] pandaids: 6982978260 6982978260
[2026-01-27 06:27:36] 2026-01-27 11:27:36,187 [wrapper] cleanup supervisor_pilot 1250911 1703493
[2026-01-27 06:27:36] 2026-01-27 11:27:36,237 [wrapper] Test setup, not cleaning
[2026-01-27 06:27:36] 2026-01-27 11:27:36,252 [wrapper] apfmon messages muted
[2026-01-27 06:27:36] 2026-01-27 11:27:36,305 [wrapper] ==== wrapper stdout END ====
[2026-01-27 06:27:36] 2026-01-27 11:27:36,337 [wrapper] ==== wrapper stderr END ====
[2026-01-27 06:27:36]  *** Error codes and diagnostics ***
[2026-01-27 06:27:36]     "exeErrorCode": 0,
[2026-01-27 06:27:36]     "exeErrorDiag": "",
[2026-01-27 06:27:36]     "pilotErrorCode": 0,
[2026-01-27 06:27:36]     "pilotErrorDiag": "",
[2026-01-27 06:27:36]  *** Listing of results directory ***
[2026-01-27 06:27:36] total 1160948
[2026-01-27 06:27:36] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-27 06:27:36] -rwx------. 1 boincer umatlas     36322 Jan 25 06:26 runpilot2-wrapper.sh
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 06:26 queuedata.json
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 06:26 pilot3.tar.gz
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas       100 Jan 26 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 06:27:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 15:38 run_atlas
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas       105 Jan 26 15:38 job.xml
[2026-01-27 06:27:36] -rw-r--r--. 3 boincer umatlas 497093900 Jan 26 15:38 EVNT.48310721._000168.pool.root.1
[2026-01-27 06:27:36] -rw-r--r--. 3 boincer umatlas 497093900 Jan 26 15:38 ATLAS.root_0
[2026-01-27 06:27:36] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 15:38 start_atlas.sh
[2026-01-27 06:27:36] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 15:38 shared
[2026-01-27 06:27:36] -rw-r--r--. 2 boincer umatlas    597746 Jan 26 15:38 input.tar.gz
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas         0 Jan 26 15:38 boinc_lockfile
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas      2533 Jan 26 19:31 pandaJob.out
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas        57 Jan 26 19:31 setup.sh.local
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas   1006441 Jan 26 19:32 agis_schedconf.cvmfs.json
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas       439 Jan 26 19:32 workernode_map.json
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas 180393727 Jan 27 06:23 HITS.48310724._008354.pool.root.1
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas       532 Jan 27 06:23 boinc_task_state.xml
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas      1044 Jan 27 06:26 memory_monitor_summary.json
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas   1516246 Jan 27 06:26 agis_ddmendpoints.agis.ALL.json
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas    733010 Jan 27 06:26 log.48310724._008354.job.log.tgz.1
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas      6384 Jan 27 06:26 heartbeat.json
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas      6840 Jan 27 06:27 init_data.xml
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas        28 Jan 27 06:27 wrapper_checkpoint.txt
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas        96 Jan 27 06:27 pilot_heartbeat.json
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas       823 Jan 27 06:27 pilotlog.txt
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas   4410075 Jan 27 06:27 log.48310724._008354.job.log.1
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas       357 Jan 27 06:27 output.list
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas       620 Jan 27 06:27 runtime_log
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas   5160960 Jan 27 06:27 result.tar.gz
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas      9417 Jan 27 06:27 runtime_log.err
[2026-01-27 06:27:36] -rw-------. 1 boincer umatlas       782 Jan 27 06:27 3m2MDmhRD48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoO7KDmoE9afm.diag
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 06:27 boinc_mmap_file
[2026-01-27 06:27:36] -rw-r--r--. 1 boincer umatlas     23577 Jan 27 06:27 stderr.txt
[2026-01-27 06:27:37] HITS file was successfully produced:
[2026-01-27 06:27:37] -rw-------. 1 boincer umatlas 180393727 Jan 27 06:23 shared/HITS.pool.root.1
[2026-01-27 06:27:37]  *** Contents of shared directory: ***
[2026-01-27 06:27:37] total 667260
[2026-01-27 06:27:37] -rw-r--r--. 3 boincer umatlas 497093900 Jan 26 15:38 ATLAS.root_0
[2026-01-27 06:27:37] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 15:38 start_atlas.sh
[2026-01-27 06:27:37] -rw-r--r--. 2 boincer umatlas    597746 Jan 26 15:38 input.tar.gz
[2026-01-27 06:27:37] -rw-------. 1 boincer umatlas 180393727 Jan 27 06:23 HITS.pool.root.1
[2026-01-27 06:27:37] -rw-------. 1 boincer umatlas   5160960 Jan 27 06:27 result.tar.gz
06:27:38 (1691549): run_atlas exited; CPU time 47020.987694
06:27:38 (1691549): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN