Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:32:09 (1421026): wrapper (7.7.26015): starting
16:32:09 (1421026): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 16:32:09] Arguments: --nthreads 12
[2026-01-27 16:32:09] Threads: 12
[2026-01-27 16:32:09] Checking for CVMFS
[2026-01-27 16:32:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 16:32:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 16:32:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 16:32:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 16:32:15] 2.13.1.0 2787 2937 71952 155591 3 50 2859774 4096001 1824 130560 0 4206000 99.953 335706 1218 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-27 16:32:15] CVMFS is ok
[2026-01-27 16:32:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 16:32:15] Checking for apptainer binary...
[2026-01-27 16:32:15] apptainer is not installed, using version from CVMFS
[2026-01-27 16:32:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 16:32:17] ryzen7
[2026-01-27 16:32:17] apptainer works
[2026-01-27 16:32:17] Set ATHENA_PROC_NUMBER=12
[2026-01-27 16:32:17] Set ATHENA_CORE_NUMBER=12
[2026-01-27 16:32:17] Starting ATLAS job with PandaID=6983771696
[2026-01-27 16:32:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 17:54:55]  *** The last 200 lines of the pilot log: ***
[2026-01-27 17:54:55]  protocol_id=None
[2026-01-27 17:54:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 17:54:55]  replicas=None
[2026-01-27 17:54:55]  scope=mc23_13p6TeV
[2026-01-27 17:54:55]  status=None
[2026-01-27 17:54:55]  status_code=0
[2026-01-27 17:54:55]  storage_token=
[2026-01-27 17:54:55]  surl=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771696/log.48318042._001518.job.log.tgz.1
[2026-01-27 17:54:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/bf/log.48318042._001518.job.log.tgz.1
[2026-01-27 17:54:55]  workdir=None
[2026-01-27 17:54:55] ]
[2026-01-27 17:54:55] 2026-01-27 17:54:18,846 | INFO     | time since job start (4779s) is within the limit (349056.0s)
[2026-01-27 17:54:55] 2026-01-27 17:54:18,856 | INFO     | transferring file log.48318042._001518.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771696/log.48318042._001518.job.log.tgz.1 t
[2026-01-27 17:54:55] 2026-01-27 17:54:18,856 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771696/log.48318042._001518.job.log.tgz.1 /opt/boinc/instance_home
[2026-01-27 17:54:55] 2026-01-27 17:54:18,942 | INFO     | adding to output.list: log.48318042._001518.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/bf/log.48318042._001518.job.log.tg
[2026-01-27 17:54:55] 2026-01-27 17:54:18,942 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 17:54:55] 2026-01-27 17:54:18,942 | INFO     | summary of transferred files:
[2026-01-27 17:54:55] 2026-01-27 17:54:18,942 | INFO     |  -- lfn=log.48318042._001518.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 17:54:55] 2026-01-27 17:54:18,943 | INFO     | stage-out finished correctly
[2026-01-27 17:54:55] 2026-01-27 17:54:20,114 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 17:54:55] 2026-01-27 17:54:20,236 | INFO     | job 6983771696 has state=finished
[2026-01-27 17:54:55] 2026-01-27 17:54:20,236 | INFO     | preparing for final server update for job 6983771696 in state='finished'
[2026-01-27 17:54:55] 2026-01-27 17:54:20,854 | INFO     | time since job start (4781s) is within the limit (349056.0s)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,955 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,958 | INFO     | reading metadata from: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771696/jobReport.json
[2026-01-27 17:54:55] 2026-01-27 17:54:20,962 | INFO     | added worker_node to metadata from /opt/boinc/instance_homes/boinc_31417/slots/1/workernode_map.json
[2026-01-27 17:54:55] 2026-01-27 17:54:20,963 | INFO     | this job has now completed (state=finished)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,963 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,963 | INFO     | log transfer has been attempted: DONE
[2026-01-27 17:54:55] 2026-01-27 17:54:20,963 | INFO     | job 6983771696 has finished - writing final server update
[2026-01-27 17:54:55] 2026-01-27 17:54:20,963 | INFO     | total number of processed events: 400 (read)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,988 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6983771696/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,988 | INFO     | extracted standard info from prmon json
[2026-01-27 17:54:55] 2026-01-27 17:54:20,988 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 17:54:55] 2026-01-27 17:54:20,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 17:54:55] 2026-01-27 17:54:20,988 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 17:54:55] 2026-01-27 17:54:20,988 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 17:54:55] 2026-01-27 17:54:20,989 | INFO     | fitting pss+swap vs Time
[2026-01-27 17:54:55] 2026-01-27 17:54:20,989 | INFO     | sum of square deviations: 106336877.5
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | sum of deviations: 814341338.0
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | mean x: 1769534198.5
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | mean y: 2672703.3714285716
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | intersect: -13548645340.956583
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | chi2: 0.0005021016622733887
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | current memory leak: 7.66 B/s (using 70 data points, chi2=0.00)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | could have reported an average CPU frequency of 4305 MHz (6 samples)
[2026-01-27 17:54:55] 2026-01-27 17:54:20,990 | INFO     | ..............................
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . Timing measurements:
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . get job = 0 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . initial setup = 50 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . payload setup = 67 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . stage-in = 0 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . payload execution = 4705 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . stage-out = 1 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | . log creation = 0 s
[2026-01-27 17:54:55] 2026-01-27 17:54:20,991 | INFO     | ..............................
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | 
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | job summary report
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | --------------------------------------------------
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | PanDA job id: 6983771696
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | task id: 48318042
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | errors: (none)
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | pilot state: finished 
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | transexitcode: 0
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | exeerrorcode: 0
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | exeerrordiag: 
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | exitcode: 0
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | exitmsg: OK
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | cpuconsumptiontime: 26173 s
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | nevents: 400
[2026-01-27 17:54:55] 2026-01-27 17:54:21,302 | INFO     | neventsw: 0
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | pid: 1429617
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | pgrp: 1429617
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | corecount: 12
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | event service: False
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | sizes: {0: 2277659, 1: 2284298, 4776: 2310406, 4778: 2319450, 4779: 2319506, 4780: 2319700}
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | --------------------------------------------------
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | 
[2026-01-27 17:54:55] 2026-01-27 17:54:21,303 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | job 6983771696 has completed (purged errors)
[2026-01-27 17:54:55] 2026-01-27 17:54:21,415 | INFO     | overall cleanup function is called
[2026-01-27 17:54:55] 2026-01-27 17:54:22,422 | INFO     | --- collectZombieJob: --- 10, [1429617]
[2026-01-27 17:54:55] 2026-01-27 17:54:22,422 | INFO     | zombie collector waiting for pid 1429617
[2026-01-27 17:54:55] 2026-01-27 17:54:22,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 17:54:55] 2026-01-27 17:54:22,422 | INFO     | collected zombie processes
[2026-01-27 17:54:55] 2026-01-27 17:54:22,422 | INFO     | will attempt to kill all subprocesses of pid=1429617
[2026-01-27 17:54:55] 2026-01-27 17:54:22,565 | INFO     | process IDs to be killed: [1429617] (in reverse order)
[2026-01-27 17:54:55] 2026-01-27 17:54:22,665 | WARNING  | process 1429617 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 17:54:55] 2026-01-27 17:54:22,714 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 17:54:55] 2026-01-27 17:54:22,714 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 17:54:55] 2026-01-27 17:54:22,716 | INFO     | did not find any defunct processes belonging to 1429617
[2026-01-27 17:54:55] 2026-01-27 17:54:22,717 | INFO     | did not find any defunct processes belonging to 1429617
[2026-01-27 17:54:55] 2026-01-27 17:54:22,717 | INFO     | ready for new job
[2026-01-27 17:54:55] 2026-01-27 17:54:22,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 17:54:55] 2026-01-27 17:54:22,722 | INFO     | **************************************
[2026-01-27 17:54:55] 2026-01-27 17:54:22,722 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 17:54:55] 2026-01-27 17:54:22,722 | INFO     | **************************************
[2026-01-27 17:54:55] 2026-01-27 17:54:22,722 | INFO     | 
[2026-01-27 17:54:55] 2026-01-27 17:54:22,746 | INFO     | architecture information:
[2026-01-27 17:54:55] 2026-01-27 17:54:22,746 | INFO     | executing command: cat /etc/os-release
[2026-01-27 17:54:55] 2026-01-27 17:54:22,787 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:54:55] 2026-01-27 17:54:22,788 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:54:55] 2026-01-27 17:54:22,788 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 17:54:55] 2026-01-27 17:54:22,788 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 17:54:55] 2026-01-27 17:54:22,799 | INFO     | cat /etc/os-release:
[2026-01-27 17:54:55] NAME="CentOS Linux"
[2026-01-27 17:54:55] VERSION="7 (Core)"
[2026-01-27 17:54:55] ID="centos"
[2026-01-27 17:54:55] ID_LIKE="rhel fedora"
[2026-01-27 17:54:55] VERSION_ID="7"
[2026-01-27 17:54:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 17:54:55] ANSI_COLOR="0;31"
[2026-01-27 17:54:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 17:54:55] HOME_URL="https://www.centos.org/"
[2026-01-27 17:54:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 17:54:55] 
[2026-01-27 17:54:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 17:54:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 17:54:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 17:54:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 17:54:55] 
[2026-01-27 17:54:55] 2026-01-27 17:54:22,799 | INFO     | **************************************
[2026-01-27 17:54:55] 2026-01-27 17:54:22,925 | INFO     | number of running child processes to parent process 1429617: 1
[2026-01-27 17:54:55] 2026-01-27 17:54:22,925 | INFO     | maximum number of monitored processes: 6
[2026-01-27 17:54:55] 2026-01-27 17:54:22,925 | INFO     | aborting job monitoring since job object (job id=6983771696) has expired
[2026-01-27 17:54:55] 2026-01-27 17:54:23,310 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-27 17:54:55] 2026-01-27 17:54:23,362 | INFO     | sufficient remaining disk space (147621675008 B)
[2026-01-27 17:54:55] 2026-01-27 17:54:23,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 17:54:55] 2026-01-27 17:54:23,362 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 17:54:55] 2026-01-27 17:54:23,362 | INFO     | update_server=False
[2026-01-27 17:54:55] 2026-01-27 17:54:23,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 17:54:55] 2026-01-27 17:54:23,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:54:55] 2026-01-27 17:54:23,366 | INFO     | will abort loop
[2026-01-27 17:54:55] 2026-01-27 17:54:23,590 | INFO     | all data control threads have been joined
[2026-01-27 17:54:55] 2026-01-27 17:54:23,810 | INFO     | all payload control threads have been joined
[2026-01-27 17:54:55] 2026-01-27 17:54:24,370 | INFO     | [job] retrieve thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,374 | INFO     | [job] job monitor thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,378 | INFO     | [job] validate thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,482 | INFO     | [payload] failed_post thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 17:54:55] 2026-01-27 17:54:24,594 | INFO     | [data] control thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,662 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,778 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,814 | INFO     | [payload] control thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:24,974 | INFO     | all job control threads have been joined
[2026-01-27 17:54:55] 2026-01-27 17:54:25,090 | INFO     | [data] copytool_in thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:25,150 | INFO     | [payload] validate_post thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:25,346 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:25,982 | INFO     | [job] control thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:26,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:54:55] 2026-01-27 17:54:26,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 17:54:55] 2026-01-27 17:54:26,598 | INFO     | [data] copytool_out thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:27,138 | INFO     | [job] queue monitor thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:30,282 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:33,946 | INFO     | job.realtimelogging is not enabled
[2026-01-27 17:54:55] 2026-01-27 17:54:34,954 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 17:54:55] 2026-01-27 17:54:47,254 | INFO     | [monitor] cgroup control has ended
[2026-01-27 17:54:55] 2026-01-27 17:54:48,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658882131776)>', '<ExcThread(monitor, started 140658199213824)>']
[2026-01-27 17:54:55] 2026-01-27 17:54:53,186 | INFO     | all workflow threads have been joined
[2026-01-27 17:54:55] 2026-01-27 17:54:53,186 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 17:54:55] 2026-01-27 17:54:53,186 | INFO     | traces error code: 0
[2026-01-27 17:54:55] 2026-01-27 17:54:53,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 17:54:55] 2026-01-27 17:54:54,091 | INFO     | PID=1425128 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 17:54:55] 2026-01-27 17:54:54,091 | INFO     | .. there are 3 such processes running
[2026-01-27 17:54:55] 2026-01-27 17:54:54,092 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 17:54:55] 2026-01-27 17:54:54,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 17:54:55] 2026-01-27 17:54:54,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 17:54:55] 2026-01-27 17:54:54,092 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 17:54:55] 2026-01-27 17:54:54,092 | INFO     | [monitor] control thread has ended
[2026-01-27 17:54:55] 2026-01-27 17:54:54,154 [wrapper] ==== pilot stdout END ====
[2026-01-27 17:54:55] 2026-01-27 17:54:54,214 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 17:54:55] 2026-01-27 17:54:54,238 [wrapper] pilotpid: 1425128
[2026-01-27 17:54:55] 2026-01-27 17:54:54,262 [wrapper] Pilot exit status: 0
[2026-01-27 17:54:55] 2026-01-27 17:54:54,374 [wrapper] pandaids: 6983771696
[2026-01-27 17:54:55] 2026-01-27 17:54:54,582 [wrapper] cleanup supervisor_pilot 1461187 1425129
[2026-01-27 17:54:55] 2026-01-27 17:54:54,634 [wrapper] Test setup, not cleaning
[2026-01-27 17:54:55] 2026-01-27 17:54:54,651 [wrapper] apfmon messages muted
[2026-01-27 17:54:55] 2026-01-27 17:54:54,702 [wrapper] ==== wrapper stdout END ====
[2026-01-27 17:54:55] 2026-01-27 17:54:54,758 [wrapper] ==== wrapper stderr END ====
[2026-01-27 17:54:55]  *** Error codes and diagnostics ***
[2026-01-27 17:54:55]     "exeErrorCode": 0,
[2026-01-27 17:54:55]     "exeErrorDiag": "",
[2026-01-27 17:54:55]     "pilotErrorCode": 0,
[2026-01-27 17:54:55]     "pilotErrorDiag": "",
[2026-01-27 17:54:55]  *** Listing of results directory ***
[2026-01-27 17:54:55] total 667000
[2026-01-27 17:54:55] -rw-r--r-- 1 boinc boinc    621528 Jan 14 11:27 pilot3.tar.gz
[2026-01-27 17:54:55] -rwx------ 1 boinc boinc     36322 Jan 26 03:19 runpilot2-wrapper.sh
[2026-01-27 17:54:55] -rw-r--r-- 1 boinc boinc      5111 Jan 26 03:21 queuedata.json
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc       100 Jan 27 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 17:54:55] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 16:32 run_atlas
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc       105 Jan 27 16:32 job.xml
[2026-01-27 17:54:55] -rw-r--r-- 2 boinc boinc     15845 Jan 27 16:32 start_atlas.sh
[2026-01-27 17:54:55] drwxrwx--x 2 boinc boinc      4096 Jan 27 16:32 shared
[2026-01-27 17:54:55] -rw-r--r-- 2 boinc boinc    634116 Jan 27 16:32 input.tar.gz
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc      6935 Jan 27 16:32 init_data.xml
[2026-01-27 17:54:55] -rw-r--r-- 2 boinc boinc 494789514 Jan 27 16:32 EVNT.48318040._000031.pool.root.1
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc         0 Jan 27 16:32 boinc_setup_complete
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc         0 Jan 27 16:32 boinc_lockfile
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc      2531 Jan 27 16:32 pandaJob.out
[2026-01-27 17:54:55] -rw------- 1 boinc boinc   1005178 Jan 27 16:33 agis_schedconf.cvmfs.json
[2026-01-27 17:54:55] -rw------- 1 boinc boinc   1516246 Jan 27 16:33 agis_ddmendpoints.agis.ALL.json
[2026-01-27 17:54:55] -rw------- 1 boinc boinc       414 Jan 27 16:34 workernode_map.json
[2026-01-27 17:54:55] drwx------ 5 boinc boinc      4096 Jan 27 16:34 pilot3
[2026-01-27 17:54:55] -rw------- 1 boinc boinc 181944549 Jan 27 17:53 HITS.48318042._001518.pool.root.1
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc       531 Jan 27 17:54 boinc_task_state.xml
[2026-01-27 17:54:55] -rw------- 1 boinc boinc      1028 Jan 27 17:54 memory_monitor_summary.json
[2026-01-27 17:54:55] -rw------- 1 boinc boinc    373480 Jan 27 17:54 log.48318042._001518.job.log.tgz.1
[2026-01-27 17:54:55] -rw------- 1 boinc boinc      6265 Jan 27 17:54 heartbeat.json
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc      8192 Jan 27 17:54 boinc_mmap_file
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc        27 Jan 27 17:54 wrapper_checkpoint.txt
[2026-01-27 17:54:55] -rw------- 1 boinc boinc       822 Jan 27 17:54 pilotlog.txt
[2026-01-27 17:54:55] -rw------- 1 boinc boinc        95 Jan 27 17:54 pilot_heartbeat.json
[2026-01-27 17:54:55] -rw------- 1 boinc boinc    755077 Jan 27 17:54 log.48318042._001518.job.log.1
[2026-01-27 17:54:55] -rw------- 1 boinc boinc       357 Jan 27 17:54 output.list
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc       620 Jan 27 17:54 runtime_log
[2026-01-27 17:54:55] -rw------- 1 boinc boinc   1146880 Jan 27 17:54 result.tar.gz
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc      9156 Jan 27 17:54 runtime_log.err
[2026-01-27 17:54:55] -rw------- 1 boinc boinc       649 Jan 27 17:54 aqmMDmrJS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3Q2KDmetf2No.diag
[2026-01-27 17:54:55] -rw-rw-r-- 1 boinc boinc     21709 Jan 27 17:54 stderr.txt
[2026-01-27 17:54:55] HITS file was successfully produced:
[2026-01-27 17:54:55] -rw------- 1 boinc boinc 181944549 Jan 27 17:53 shared/HITS.pool.root.1
[2026-01-27 17:54:55]  *** Contents of shared directory: ***
[2026-01-27 17:54:55] total 662644
[2026-01-27 17:54:55] -rw-r--r-- 2 boinc boinc     15845 Jan 27 16:32 start_atlas.sh
[2026-01-27 17:54:55] -rw-r--r-- 2 boinc boinc    634116 Jan 27 16:32 input.tar.gz
[2026-01-27 17:54:55] -rw-r--r-- 2 boinc boinc 494789514 Jan 27 16:32 ATLAS.root_0
[2026-01-27 17:54:55] -rw------- 1 boinc boinc 181944549 Jan 27 17:53 HITS.pool.root.1
[2026-01-27 17:54:55] -rw------- 1 boinc boinc   1146880 Jan 27 17:54 result.tar.gz
17:54:57 (1421026): run_atlas exited; CPU time 26200.285732
17:54:57 (1421026): called boinc_finish(0)

</stderr_txt>
]]>

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