Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:10:54 (1792393): wrapper (7.7.26015): starting
08:10:54 (1792393): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 08:10:54] Arguments: --nthreads 2
[2026-01-27 08:10:54] Threads: 2
[2026-01-27 08:10:54] Checking for CVMFS
[2026-01-27 08:10:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 08:10:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 08:10:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 08:10:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 08:10:54] 2.9.2.0 843047 9325 61488 155576 1 49 24645593 36864001 0 130560 0 2837759 99.980 300420 7212 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 08:10:54] CVMFS is ok
[2026-01-27 08:10:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 08:10:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 08:10:54] Further information can be found at the LHC@home message board.
[2026-01-27 08:10:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 08:10:54] Checking for apptainer binary...
[2026-01-27 08:10:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 08:10:54] Running /usr/bin/apptainer --version
[2026-01-27 08:10:54] apptainer version 1.4.1-1.1
[2026-01-27 08:10:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 08:10:54] thA331
[2026-01-27 08:10:54] apptainer works
[2026-01-27 08:10:54] Set ATHENA_PROC_NUMBER=2
[2026-01-27 08:10:54] Set ATHENA_CORE_NUMBER=2
[2026-01-27 08:10:54] Starting ATLAS job with PandaID=6983772706
[2026-01-27 08:10:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 10:29:51]  *** The last 200 lines of the pilot log: ***
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | job 6983772706 has completed (purged errors)
[2026-01-27 10:29:51] 2026-01-27 09:29:19,471 | INFO     | overall cleanup function is called
[2026-01-27 10:29:51] 2026-01-27 09:29:19,822 | INFO     | PID=1796418 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 10:29:51] 2026-01-27 09:29:20,477 | INFO     | --- collectZombieJob: --- 10, [1800826]
[2026-01-27 10:29:51] 2026-01-27 09:29:20,477 | INFO     | zombie collector waiting for pid 1800826
[2026-01-27 10:29:51] 2026-01-27 09:29:20,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 10:29:51] 2026-01-27 09:29:20,478 | INFO     | collected zombie processes
[2026-01-27 10:29:51] 2026-01-27 09:29:20,478 | INFO     | will attempt to kill all subprocesses of pid=1800826
[2026-01-27 10:29:51] 2026-01-27 09:29:20,511 | INFO     | process IDs to be killed: [1800826] (in reverse order)
[2026-01-27 10:29:51] 2026-01-27 09:29:20,533 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 10:29:51] 2026-01-27 09:29:20,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 10:29:51] 2026-01-27 09:29:20,534 | INFO     | did not find any defunct processes belonging to 1800826
[2026-01-27 10:29:51] 2026-01-27 09:29:20,535 | INFO     | did not find any defunct processes belonging to 1800826
[2026-01-27 10:29:51] 2026-01-27 09:29:20,535 | INFO     | ready for new job
[2026-01-27 10:29:51] 2026-01-27 09:29:20,535 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 10:29:51] 2026-01-27 09:29:20,535 | INFO     | **************************************
[2026-01-27 10:29:51] 2026-01-27 09:29:20,535 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 10:29:51] 2026-01-27 09:29:20,535 | INFO     | **************************************
[2026-01-27 10:29:51] 2026-01-27 09:29:20,536 | INFO     | 
[2026-01-27 10:29:51] 2026-01-27 09:29:20,536 | INFO     | architecture information:
[2026-01-27 10:29:51] 2026-01-27 09:29:20,536 | INFO     | executing command: cat /etc/os-release
[2026-01-27 10:29:51] 2026-01-27 09:29:20,545 | INFO     | cat /etc/os-release:
[2026-01-27 10:29:51] NAME="CentOS Linux"
[2026-01-27 10:29:51] VERSION="7 (Core)"
[2026-01-27 10:29:51] ID="centos"
[2026-01-27 10:29:51] ID_LIKE="rhel fedora"
[2026-01-27 10:29:51] VERSION_ID="7"
[2026-01-27 10:29:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 10:29:51] ANSI_COLOR="0;31"
[2026-01-27 10:29:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 10:29:51] HOME_URL="https://www.centos.org/"
[2026-01-27 10:29:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 10:29:51] 
[2026-01-27 10:29:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 10:29:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 10:29:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 10:29:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 10:29:51] 
[2026-01-27 10:29:51] 2026-01-27 09:29:20,545 | INFO     | **************************************
[2026-01-27 10:29:51] 2026-01-27 09:29:21,048 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 10:29:51] 2026-01-27 09:29:21,060 | INFO     | sufficient remaining disk space (234241392640 B)
[2026-01-27 10:29:51] 2026-01-27 09:29:21,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 10:29:51] 2026-01-27 09:29:21,060 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 10:29:51] 2026-01-27 09:29:21,060 | INFO     | update_server=False
[2026-01-27 10:29:51] 2026-01-27 09:29:21,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 10:29:51] 2026-01-27 09:29:21,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 10:29:51] 2026-01-27 09:29:21,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 10:29:51] 2026-01-27 09:29:21,371 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 10:29:51] 2026-01-27 09:29:21,372 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 10:29:51] 2026-01-27 09:29:21,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 10:29:51] 2026-01-27 09:29:21,372 | INFO     | will abort loop
[2026-01-27 10:29:51] 2026-01-27 09:29:21,886 | INFO     | all job control threads have been joined
[2026-01-27 10:29:51] 2026-01-27 09:29:21,890 | INFO     | all data control threads have been joined
[2026-01-27 10:29:51] 2026-01-27 09:29:22,064 | INFO     | [job] retrieve thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:22,065 | INFO     | [job] queue monitor thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:22,374 | INFO     | [job] job monitor thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:22,554 | INFO     | all payload control threads have been joined
[2026-01-27 10:29:51] 2026-01-27 09:29:22,783 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:22,893 | INFO     | [job] control thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:22,896 | INFO     | [data] control thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:22,959 | INFO     | [payload] failed_post thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,060 | INFO     | [job] validate thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,065 | INFO     | [data] copytool_out thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,214 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,343 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,364 | INFO     | [data] copytool_in thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 10:29:51] 2026-01-27 09:29:23,534 | INFO     | [payload] validate_post thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:23,559 | INFO     | [payload] control thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:27,085 | INFO     | [monitor] cgroup control has ended
[2026-01-27 10:29:51] 2026-01-27 09:29:27,376 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:31,814 | INFO     | job.realtimelogging is not enabled
[2026-01-27 10:29:51] 2026-01-27 09:29:32,820 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 10:29:51] 2026-01-27 09:29:34,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490775975744)>', '<ExcThread(monitor, started 140490057971456)>']
[2026-01-27 10:29:51] 2026-01-27 09:29:39,083 | INFO     | all workflow threads have been joined
[2026-01-27 10:29:51] 2026-01-27 09:29:39,083 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 10:29:51] 2026-01-27 09:29:39,084 | INFO     | traces error code: 0
[2026-01-27 10:29:51] 2026-01-27 09:29:39,084 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 10:29:51] 2026-01-27 09:29:51,884 | INFO     | PID=1796418 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 10:29:51] 2026-01-27 09:29:51,885 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 10:29:51] 2026-01-27 09:29:51,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 10:29:51] 2026-01-27 09:29:51,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 10:29:51] 2026-01-27 09:29:51,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 10:29:51] 2026-01-27 09:29:51,885 | INFO     | [monitor] control thread has ended
[2026-01-27 10:29:51] 2026-01-27 09:29:51,923 [wrapper] ==== pilot stdout END ====
[2026-01-27 10:29:51] 2026-01-27 09:29:51,926 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 10:29:51] 2026-01-27 09:29:51,928 [wrapper] pilotpid: 1796418
[2026-01-27 10:29:51] 2026-01-27 09:29:51,930 [wrapper] Pilot exit status: 0
[2026-01-27 10:29:51] 2026-01-27 09:29:51,936 [wrapper] pandaids: 6983772706
[2026-01-27 10:29:51] 2026-01-27 09:29:51,949 [wrapper] cleanup supervisor_pilot 1805877 1796419
[2026-01-27 10:29:51] 2026-01-27 09:29:51,951 [wrapper] Test setup, not cleaning
[2026-01-27 10:29:51] 2026-01-27 09:29:51,953 [wrapper] apfmon messages muted
[2026-01-27 10:29:51] 2026-01-27 09:29:51,955 [wrapper] ==== wrapper stdout END ====
[2026-01-27 10:29:51] 2026-01-27 09:29:51,957 [wrapper] ==== wrapper stderr END ====
[2026-01-27 10:29:51]  *** Error codes and diagnostics ***
[2026-01-27 10:29:51]     "exeErrorCode": 0,
[2026-01-27 10:29:51]     "exeErrorDiag": "",
[2026-01-27 10:29:51]     "pilotErrorCode": 0,
[2026-01-27 10:29:51]     "pilotErrorDiag": "",
[2026-01-27 10:29:51]  *** Listing of results directory ***
[2026-01-27 10:29:51] total 675796
[2026-01-27 10:29:51] -rwx------ 1 boinc boinc     36322 Jan 26 04:18 runpilot2-wrapper.sh
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:19 queuedata.json
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc       100 Jan 27 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 10:29:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 08:10 run_atlas
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc       105 Jan 27 08:10 job.xml
[2026-01-27 10:29:51] -rw-r--r-- 2 boinc boinc 501075542 Jan 27 08:10 EVNT.48318040._000037.pool.root.1
[2026-01-27 10:29:51] -rw-r--r-- 2 boinc boinc    597769 Jan 27 08:10 input.tar.gz
[2026-01-27 10:29:51] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:10 start_atlas.sh
[2026-01-27 10:29:51] drwxrwx--x 2 boinc boinc      4096 Jan 27 08:10 shared
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:10 boinc_setup_complete
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc      6206 Jan 27 08:10 init_data.xml
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:10 boinc_lockfile
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc      2532 Jan 27 08:10 pandaJob.out
[2026-01-27 10:29:51] -rw------- 1 boinc boinc   1004335 Jan 27 08:11 agis_schedconf.cvmfs.json
[2026-01-27 10:29:51] -rw------- 1 boinc boinc   1516246 Jan 27 08:11 agis_ddmendpoints.agis.ALL.json
[2026-01-27 10:29:51] -rw------- 1 boinc boinc       419 Jan 27 08:11 workernode_map.json
[2026-01-27 10:29:51] drwx------ 5 boinc boinc      4096 Jan 27 08:11 pilot3
[2026-01-27 10:29:51] -rw------- 1 boinc boinc 184060231 Jan 27 10:28 HITS.48318042._001830.pool.root.1
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc       530 Jan 27 10:28 boinc_task_state.xml
[2026-01-27 10:29:51] -rw------- 1 boinc boinc      1018 Jan 27 10:29 memory_monitor_summary.json
[2026-01-27 10:29:51] -rw------- 1 boinc boinc    289512 Jan 27 10:29 log.48318042._001830.job.log.tgz.1
[2026-01-27 10:29:51] -rw------- 1 boinc boinc      6290 Jan 27 10:29 heartbeat.json
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc      8192 Jan 27 10:29 boinc_mmap_file
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc        27 Jan 27 10:29 wrapper_checkpoint.txt
[2026-01-27 10:29:51] -rw------- 1 boinc boinc       747 Jan 27 10:29 pilotlog.txt
[2026-01-27 10:29:51] -rw------- 1 boinc boinc        95 Jan 27 10:29 pilot_heartbeat.json
[2026-01-27 10:29:51] -rw------- 1 boinc boinc   1186912 Jan 27 10:29 log.48318042._001830.job.log.1
[2026-01-27 10:29:51] -rw------- 1 boinc boinc       357 Jan 27 10:29 output.list
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc       620 Jan 27 10:29 runtime_log
[2026-01-27 10:29:51] -rw------- 1 boinc boinc   1495040 Jan 27 10:29 result.tar.gz
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc      8896 Jan 27 10:29 runtime_log.err
[2026-01-27 10:29:51] -rw------- 1 boinc boinc       658 Jan 27 10:29 VSQKDmTIS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLO2KDmHdj9xm.diag
[2026-01-27 10:29:51] -rw-r--r-- 1 boinc boinc     12371 Jan 27 10:29 stderr.txt
[2026-01-27 10:29:51] HITS file was successfully produced:
[2026-01-27 10:29:52] -rw------- 1 boinc boinc 184060231 Jan 27 10:28 shared/HITS.pool.root.1
[2026-01-27 10:29:52]  *** Contents of shared directory: ***
[2026-01-27 10:29:52] total 671148
[2026-01-27 10:29:52] -rw-r--r-- 2 boinc boinc 501075542 Jan 27 08:10 ATLAS.root_0
[2026-01-27 10:29:52] -rw-r--r-- 2 boinc boinc    597769 Jan 27 08:10 input.tar.gz
[2026-01-27 10:29:52] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:10 start_atlas.sh
[2026-01-27 10:29:52] -rw------- 1 boinc boinc 184060231 Jan 27 10:28 HITS.pool.root.1
[2026-01-27 10:29:52] -rw------- 1 boinc boinc   1495040 Jan 27 10:29 result.tar.gz
10:29:53 (1792393): run_atlas exited; CPU time 16188.081902
10:29:53 (1792393): called boinc_finish(0)

</stderr_txt>
]]>

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