Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:18:04 (1199123): wrapper (7.7.26015): starting
05:18:04 (1199123): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 05:18:04] Arguments: --nthreads 4
[2026-01-28 05:18:04] Threads: 4
[2026-01-28 05:18:04] Checking for CVMFS
[2026-01-28 05:18:04] No cvmfs_config command found, will try listing directly
[2026-01-28 05:18:04] CVMFS is ok
[2026-01-28 05:18:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 05:18:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 05:18:04] Further information can be found at the LHC@home message board.
[2026-01-28 05:18:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 05:18:04] Checking for apptainer binary...
[2026-01-28 05:18:04] which: no apptainer in ((null))
[2026-01-28 05:18:04] apptainer is not installed, using version from CVMFS
[2026-01-28 05:18:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 05:18:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-01-28 05:18:04] apptainer works
[2026-01-28 05:18:04] Set ATHENA_PROC_NUMBER=4
[2026-01-28 05:18:04] Set ATHENA_CORE_NUMBER=4
[2026-01-28 05:18:04] Starting ATLAS job with PandaID=6983772921
[2026-01-28 05:18:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 08:44:09]  *** The last 200 lines of the pilot log: ***
[2026-01-28 08:44:09] 2026-01-28 07:38:03,024 | INFO     | reading metadata from: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6983772921/jobReport.json
[2026-01-28 08:44:09] 2026-01-28 07:38:03,028 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot60/slots/0/workernode_map.json
[2026-01-28 08:44:09] 2026-01-28 07:38:03,028 | INFO     | this job has now completed (state=finished)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,028 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,028 | INFO     | log transfer has been attempted: DONE
[2026-01-28 08:44:09] 2026-01-28 07:38:03,029 | INFO     | job 6983772921 has finished - writing final server update
[2026-01-28 08:44:09] 2026-01-28 07:38:03,029 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1362453/.job.ad'
[2026-01-28 08:44:09] 2026-01-28 07:38:03,029 | INFO     | total number of processed events: 400 (read)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,043 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6983772921/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,044 | INFO     | extracted standard info from prmon json
[2026-01-28 08:44:09] 2026-01-28 07:38:03,044 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 08:44:09] 2026-01-28 07:38:03,045 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 08:44:09] 2026-01-28 07:38:03,045 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 08:44:09] 2026-01-28 07:38:03,045 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 08:44:09] 2026-01-28 07:38:03,050 | INFO     | fitting pss+swap vs Time
[2026-01-28 08:44:09] 2026-01-28 07:38:03,050 | INFO     | sum of square deviations: 2334722845.0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,052 | INFO     | sum of deviations: -10153504930.500004
[2026-01-28 08:44:09] 2026-01-28 07:38:03,052 | INFO     | mean x: 1769579874.5
[2026-01-28 08:44:09] 2026-01-28 07:38:03,052 | INFO     | mean y: 2354542.852040816
[2026-01-28 08:44:09] 2026-01-28 07:38:03,052 | INFO     | intersect: 7698102249.749271
[2026-01-28 08:44:09] 2026-01-28 07:38:03,052 | INFO     | chi2: 1.4558597922080552
[2026-01-28 08:44:09] 2026-01-28 07:38:03,053 | INFO     | sum of square deviations: 2160561440.0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,054 | INFO     | sum of deviations: -9661809581.000004
[2026-01-28 08:44:09] 2026-01-28 07:38:03,054 | INFO     | mean x: 1769579722.0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,055 | INFO     | mean y: 2354973.4712041887
[2026-01-28 08:44:09] 2026-01-28 07:38:03,055 | INFO     | intersect: 7915734336.73658
[2026-01-28 08:44:09] 2026-01-28 07:38:03,055 | INFO     | chi2: 1.4552270881542542
[2026-01-28 08:44:09] 2026-01-28 07:38:03,055 | INFO     | current chi2=1.4552270881542542 (change=0.0434591337151637 %)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,055 | INFO     | right removable region: 190
[2026-01-28 08:44:09] 2026-01-28 07:38:03,056 | INFO     | sum of square deviations: 2160561440.0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,057 | INFO     | sum of deviations: -34660173709.00001
[2026-01-28 08:44:09] 2026-01-28 07:38:03,057 | INFO     | mean x: 1769580027.0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,057 | INFO     | mean y: 2375705.2879581153
[2026-01-28 08:44:09] 2026-01-28 07:38:03,057 | INFO     | intersect: 28390344680.51734
[2026-01-28 08:44:09] 2026-01-28 07:38:03,058 | INFO     | chi2: 0.11656204638064065
[2026-01-28 08:44:09] 2026-01-28 07:38:03,058 | INFO     | current chi2=0.11656204638064065 (change=91.99359395702145 %)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,058 | INFO     | sum of square deviations: 1995283922.5
[2026-01-28 08:44:09] 2026-01-28 07:38:03,059 | INFO     | sum of deviations: -32334955030.0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,060 | INFO     | mean x: 1769580179.5
[2026-01-28 08:44:09] 2026-01-28 07:38:03,060 | INFO     | mean y: 2373541.4838709678
[2026-01-28 08:44:09] 2026-01-28 07:38:03,060 | INFO     | intersect: 28679643418.15318
[2026-01-28 08:44:09] 2026-01-28 07:38:03,060 | INFO     | chi2: 0.11396386907575395
[2026-01-28 08:44:09] 2026-01-28 07:38:03,060 | INFO     | current chi2=0.11396386907575395 (change=2.2290079709154917 %)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,061 | INFO     | left removable region: 20
[2026-01-28 08:44:09] 2026-01-28 07:38:03,061 | INFO     | sum of square deviations: 1523386702.5
[2026-01-28 08:44:09] 2026-01-28 07:38:03,062 | INFO     | sum of deviations: -23464556581.999996
[2026-01-28 08:44:09] 2026-01-28 07:38:03,062 | INFO     | mean x: 1769580301.5
[2026-01-28 08:44:09] 2026-01-28 07:38:03,062 | INFO     | mean y: 2366489.494117647
[2026-01-28 08:44:09] 2026-01-28 07:38:03,063 | INFO     | intersect: 27259015797.77398
[2026-01-28 08:44:09] 2026-01-28 07:38:03,063 | INFO     | chi2: 0.1049312135058031
[2026-01-28 08:44:09] 2026-01-28 07:38:03,063 | INFO     | current memory leak: -15.40 B/s (using 170 data points, chi2=0.10)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | could have reported an average CPU frequency of 2690 MHz (10 samples)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | ..............................
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . Timing measurements:
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . get job = 0 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . initial setup = 6 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . payload setup = 6 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . stage-in = 0 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . payload execution = 11950 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . stage-out = 1 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,064 | INFO     | . log creation = 0 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,065 | INFO     | ..............................
[2026-01-28 08:44:09] 2026-01-28 07:38:03,419 | INFO     | 
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | job summary report
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | --------------------------------------------------
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | PanDA job id: 6983772921
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | task id: 48318042
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | errors: (none)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | pilot state: finished 
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | transexitcode: 0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | exeerrorcode: 0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | exeerrordiag: 
[2026-01-28 08:44:09] 2026-01-28 07:38:03,420 | INFO     | exitcode: 0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | exitmsg: OK
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | cpuconsumptiontime: 45742 s
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | nevents: 400
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | neventsw: 0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | pid: 1216437
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | pgrp: 1216437
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | corecount: 4
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | event service: False
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | sizes: {0: 2283829, 1: 2284290, 11: 2284290, 11961: 2313618, 11962: 2322638, 11965: 2322694, 11968: 2323016}
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | --------------------------------------------------
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | 
[2026-01-28 08:44:09] 2026-01-28 07:38:03,421 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,449 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 08:44:09] 2026-01-28 07:38:03,450 | INFO     | job 6983772921 has completed (purged errors)
[2026-01-28 08:44:09] 2026-01-28 07:38:03,450 | INFO     | overall cleanup function is called
[2026-01-28 08:44:09] 2026-01-28 07:38:04,457 | INFO     | --- collectZombieJob: --- 10, [1216437]
[2026-01-28 08:44:09] 2026-01-28 07:38:04,458 | INFO     | zombie collector waiting for pid 1216437
[2026-01-28 08:44:09] 2026-01-28 07:38:04,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 08:44:09] 2026-01-28 07:38:04,458 | INFO     | collected zombie processes
[2026-01-28 08:44:09] 2026-01-28 07:38:04,458 | INFO     | will attempt to kill all subprocesses of pid=1216437
[2026-01-28 08:44:09] 2026-01-28 07:38:04,836 | INFO     | process IDs to be killed: [1216437] (in reverse order)
[2026-01-28 08:44:09] 2026-01-28 07:38:04,958 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 08:44:09] 2026-01-28 07:38:04,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 08:44:09] 2026-01-28 07:38:04,972 | INFO     | did not find any defunct processes belonging to 1216437
[2026-01-28 08:44:09] 2026-01-28 07:38:04,985 | INFO     | did not find any defunct processes belonging to 1216437
[2026-01-28 08:44:09] 2026-01-28 07:38:04,985 | INFO     | ready for new job
[2026-01-28 08:44:09] 2026-01-28 07:38:04,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 08:44:09] 2026-01-28 07:38:04,987 | INFO     | **************************************
[2026-01-28 08:44:09] 2026-01-28 07:38:04,988 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 08:44:09] 2026-01-28 07:38:04,988 | INFO     | **************************************
[2026-01-28 08:44:09] 2026-01-28 07:38:04,988 | INFO     | 
[2026-01-28 08:44:09] 2026-01-28 07:38:04,992 | INFO     | architecture information:
[2026-01-28 08:44:09] 2026-01-28 07:38:04,992 | INFO     | executing command: cat /etc/os-release
[2026-01-28 08:44:09] 2026-01-28 07:38:05,009 | INFO     | cat /etc/os-release:
[2026-01-28 08:44:09] NAME="CentOS Linux"
[2026-01-28 08:44:09] VERSION="7 (Core)"
[2026-01-28 08:44:09] ID="centos"
[2026-01-28 08:44:09] ID_LIKE="rhel fedora"
[2026-01-28 08:44:09] VERSION_ID="7"
[2026-01-28 08:44:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 08:44:09] ANSI_COLOR="0;31"
[2026-01-28 08:44:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 08:44:09] HOME_URL="https://www.centos.org/"
[2026-01-28 08:44:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 08:44:09] 
[2026-01-28 08:44:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 08:44:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 08:44:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 08:44:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 08:44:09] 
[2026-01-28 08:44:09] 2026-01-28 07:38:05,009 | INFO     | **************************************
[2026-01-28 08:44:09] 2026-01-28 07:38:05,512 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2026-01-28 08:44:09] 2026-01-28 07:38:05,532 | INFO     | sufficient remaining disk space (680872902656 B)
[2026-01-28 08:44:09] 2026-01-28 07:38:05,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 08:44:09] 2026-01-28 07:38:05,532 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 08:44:09] 2026-01-28 07:38:05,532 | INFO     | update_server=False
[2026-01-28 08:44:09] 2026-01-28 07:38:05,533 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 08:44:09] 2026-01-28 07:38:05,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 08:44:09] 2026-01-28 07:38:05,657 | INFO     | all payload control threads have been joined
[2026-01-28 08:44:09] 2026-01-28 07:38:05,701 | INFO     | all data control threads have been joined
[2026-01-28 08:44:09] 2026-01-28 07:38:05,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 08:44:09] 2026-01-28 07:38:05,866 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 08:44:09] 2026-01-28 07:38:05,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 08:44:09] 2026-01-28 07:38:05,866 | INFO     | will abort loop
[2026-01-28 08:44:09] 2026-01-28 07:38:06,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 08:44:09] 2026-01-28 07:38:06,533 | INFO     | [job] retrieve thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:06,585 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:06,663 | INFO     | [payload] control thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:06,707 | INFO     | [data] control thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:06,815 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:06,871 | INFO     | [job] job monitor thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:06,885 | INFO     | all job control threads have been joined
[2026-01-28 08:44:09] 2026-01-28 07:38:07,137 | INFO     | [data] copytool_in thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:07,196 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:07,538 | INFO     | [data] copytool_out thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:07,571 | INFO     | [payload] failed_post thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:07,888 | INFO     | [job] control thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:07,922 | INFO     | [job] validate thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:08,091 | INFO     | [payload] validate_post thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:08,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 08:44:09] 2026-01-28 07:38:09,190 | INFO     | [job] queue monitor thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:10,200 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:15,649 | INFO     | job.realtimelogging is not enabled
[2026-01-28 08:44:09] 2026-01-28 07:38:16,655 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 08:44:09] 2026-01-28 07:38:36,440 | INFO     | PID=1206990 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 08:44:09] 2026-01-28 07:38:36,441 | INFO     | .. there are 4 such processes running
[2026-01-28 08:44:09] 2026-01-28 07:38:36,441 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 08:44:09] 2026-01-28 07:38:36,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 08:44:09] 2026-01-28 07:38:36,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 08:44:09] 2026-01-28 07:38:42,768 | INFO     | [monitor] cgroup control has ended
[2026-01-28 08:44:09] 2026-01-28 07:38:44,367 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23162243479360)>', '<ExcThread(monitor, started 23162002876160)>']
[2026-01-28 08:44:09] 2026-01-28 07:38:44,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 08:44:09] 2026-01-28 07:38:44,469 | INFO     | [monitor] control thread has ended
[2026-01-28 08:44:09] 2026-01-28 07:38:49,391 | INFO     | all workflow threads have been joined
[2026-01-28 08:44:09] 2026-01-28 07:38:49,392 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 08:44:09] 2026-01-28 07:38:49,392 | INFO     | traces error code: 0
[2026-01-28 08:44:09] 2026-01-28 07:38:49,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 08:44:09] 2026-01-28 07:38:49,550 [wrapper] ==== pilot stdout END ====
[2026-01-28 08:44:09] 2026-01-28 07:38:49,553 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 08:44:09] 2026-01-28 07:38:49,556 [wrapper] pilotpid: 1206990
[2026-01-28 08:44:09] 2026-01-28 07:38:49,558 [wrapper] Pilot exit status: 0
[2026-01-28 08:44:09] 2026-01-28 07:38:49,569 [wrapper] pandaids: 6983772921
[2026-01-28 08:44:09] 2026-01-28 07:38:49,648 [wrapper] cleanup supervisor_pilot 1328284 1206991
[2026-01-28 08:44:09] 2026-01-28 07:38:49,651 [wrapper] Test setup, not cleaning
[2026-01-28 08:44:09] 2026-01-28 07:38:49,654 [wrapper] apfmon messages muted
[2026-01-28 08:44:09] 2026-01-28 07:38:49,657 [wrapper] ==== wrapper stdout END ====
[2026-01-28 08:44:09] 2026-01-28 07:38:49,659 [wrapper] ==== wrapper stderr END ====
[2026-01-28 08:44:09]  *** Error codes and diagnostics ***
[2026-01-28 08:44:09]     "exeErrorCode": 0,
[2026-01-28 08:44:09]     "exeErrorDiag": "",
[2026-01-28 08:44:09]     "pilotErrorCode": 0,
[2026-01-28 08:44:09]     "pilotErrorDiag": "",
[2026-01-28 08:44:09]  *** Listing of results directory ***
[2026-01-28 08:44:09] total 673264
[2026-01-28 08:44:09] -rwx------ 1 boinc boinc     36322 Jan 26 04:18 runpilot2-wrapper.sh
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:19 queuedata.json
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc       100 Jan 28 05:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 08:44:09] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 05:17 run_atlas
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc       105 Jan 28 05:17 job.xml
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc      6639 Jan 28 05:18 init_data.xml
[2026-01-28 08:44:09] -rw-r--r-- 2 boinc boinc 498501777 Jan 28 05:18 EVNT.48318040._000041.pool.root.1
[2026-01-28 08:44:09] -rw-r--r-- 2 boinc boinc     15845 Jan 28 05:18 start_atlas.sh
[2026-01-28 08:44:09] drwxrwx--x 2 boinc boinc      4096 Jan 28 05:18 shared
[2026-01-28 08:44:09] -rw-r--r-- 2 boinc boinc    597768 Jan 28 05:18 input.tar.gz
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc         0 Jan 28 05:18 boinc_lockfile
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc      2533 Jan 28 05:18 pandaJob.out
[2026-01-28 08:44:09] -rw------- 1 boinc boinc   1005256 Jan 28 05:18 agis_schedconf.cvmfs.json
[2026-01-28 08:44:09] -rw------- 1 boinc boinc       452 Jan 28 05:18 workernode_map.json
[2026-01-28 08:44:09] drwx------ 5 boinc boinc      4096 Jan 28 05:18 pilot3
[2026-01-28 08:44:09] -rw------- 1 boinc boinc 182809773 Jan 28 08:37 HITS.48318042._002045.pool.root.1
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc       528 Jan 28 08:37 boinc_task_state.xml
[2026-01-28 08:44:09] -rw------- 1 boinc boinc        95 Jan 28 08:37 pilot_heartbeat.json
[2026-01-28 08:44:09] -rw------- 1 boinc boinc      1035 Jan 28 08:37 memory_monitor_summary.json
[2026-01-28 08:44:09] -rw------- 1 boinc boinc   1516246 Jan 28 08:37 agis_ddmendpoints.agis.ALL.json
[2026-01-28 08:44:09] -rw------- 1 boinc boinc    394208 Jan 28 08:37 log.48318042._002045.job.log.tgz.1
[2026-01-28 08:44:09] -rw------- 1 boinc boinc      6408 Jan 28 08:38 heartbeat.json
[2026-01-28 08:44:09] -rw------- 1 boinc boinc      5087 Jan 28 08:38 pilotlog.txt
[2026-01-28 08:44:09] -rw------- 1 boinc boinc   1691294 Jan 28 08:38 log.48318042._002045.job.log.1
[2026-01-28 08:44:09] -rw------- 1 boinc boinc       357 Jan 28 08:38 output.list
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc       620 Jan 28 08:38 runtime_log
[2026-01-28 08:44:09] -rw------- 1 boinc boinc   2099200 Jan 28 08:38 result.tar.gz
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc      9205 Jan 28 08:38 runtime_log.err
[2026-01-28 08:44:09] -rw------- 1 boinc boinc       666 Jan 28 08:38 P2OMDmTIS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQz8KDmstI4Go.diag
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc        26 Jan 28 08:44 wrapper_checkpoint.txt
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc      8192 Jan 28 08:44 boinc_mmap_file
[2026-01-28 08:44:09] -rw-r--r-- 1 boinc boinc     21117 Jan 28 08:44 stderr.txt
[2026-01-28 08:44:09] HITS file was successfully produced:
[2026-01-28 08:44:09] -rw------- 1 boinc boinc 182809773 Jan 28 08:37 shared/HITS.pool.root.1
[2026-01-28 08:44:09]  *** Contents of shared directory: ***
[2026-01-28 08:44:09] total 668008
[2026-01-28 08:44:09] -rw-r--r-- 2 boinc boinc 498501777 Jan 28 05:18 ATLAS.root_0
[2026-01-28 08:44:09] -rw-r--r-- 2 boinc boinc     15845 Jan 28 05:18 start_atlas.sh
[2026-01-28 08:44:09] -rw-r--r-- 2 boinc boinc    597768 Jan 28 05:18 input.tar.gz
[2026-01-28 08:44:09] -rw------- 1 boinc boinc 182809773 Jan 28 08:37 HITS.pool.root.1
[2026-01-28 08:44:09] -rw------- 1 boinc boinc   2099200 Jan 28 08:38 result.tar.gz
08:44:11 (1199123): run_atlas exited; CPU time 46272.244946
08:44:11 (1199123): called boinc_finish(0)

</stderr_txt>
]]>

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