Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:34 (788): wrapper (7.7.26015): starting
04:21:34 (788): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 04:21:34] Arguments: --nthreads 8
[2026-01-27 04:21:34] Threads: 8
[2026-01-27 04:21:34] Checking for CVMFS
[2026-01-27 04:21:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:21:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:21:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:21:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:21:37] 2.11.2.0 18604 60780 133560 155571 1 53 24462514 25165824 899 130560 0 22005957 99.835 15123308 3216 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 04:21:37] CVMFS is ok
[2026-01-27 04:21:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:21:37] Checking for apptainer binary...
[2026-01-27 04:21:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:21:37] Running /usr/bin/apptainer --version
[2026-01-27 04:21:37] apptainer version 1.3.2-1.el7
[2026-01-27 04:21:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:22:01] cg-vwn461.simple-grid.lan
[2026-01-27 04:22:01] apptainer works
[2026-01-27 04:22:02] Set ATHENA_PROC_NUMBER=8
[2026-01-27 04:22:02] Set ATHENA_CORE_NUMBER=8
[2026-01-27 04:22:02] Starting ATLAS job with PandaID=6983602285
[2026-01-27 04:22:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 09:39:23]  *** The last 200 lines of the pilot log: ***
[2026-01-27 09:39:23] 2026-01-27 08:38:16,389 | INFO     | job 6983602285 has finished - writing final server update
[2026-01-27 09:39:23] 2026-01-27 08:38:16,389 | INFO     | total number of processed events: 400 (read)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,391 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-6983602285/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,391 | INFO     | extracted standard info from prmon json
[2026-01-27 09:39:23] 2026-01-27 08:38:16,392 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 09:39:23] 2026-01-27 08:38:16,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 09:39:23] 2026-01-27 08:38:16,392 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 09:39:23] 2026-01-27 08:38:16,392 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 09:39:23] 2026-01-27 08:38:16,398 | INFO     | fitting pss+swap vs Time
[2026-01-27 09:39:23] 2026-01-27 08:38:16,398 | INFO     | sum of square deviations: 8372156975.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,401 | INFO     | sum of deviations: 137340917053.5
[2026-01-27 09:39:23] 2026-01-27 08:38:16,401 | INFO     | mean x: 1769493957.5
[2026-01-27 09:39:23] 2026-01-27 08:38:16,401 | INFO     | mean y: 2469109.8633333333
[2026-01-27 09:39:23] 2026-01-27 08:38:16,407 | INFO     | intersect: -29025166608.07266
[2026-01-27 09:39:23] 2026-01-27 08:38:16,407 | INFO     | chi2: 8.420752037613273
[2026-01-27 09:39:23] 2026-01-27 08:38:16,408 | INFO     | sum of square deviations: 7960484140.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,411 | INFO     | sum of deviations: 154825412171.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,411 | INFO     | mean x: 1769493805.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,411 | INFO     | mean y: 2475486.7220338983
[2026-01-27 09:39:23] 2026-01-27 08:38:16,411 | INFO     | intersect: -34412844344.96299
[2026-01-27 09:39:23] 2026-01-27 08:38:16,412 | INFO     | chi2: 7.713166690062806
[2026-01-27 09:39:23] 2026-01-27 08:38:16,412 | INFO     | current chi2=7.713166690062806 (change=8.402875947301023 %)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,412 | INFO     | right removable region: 294
[2026-01-27 09:39:23] 2026-01-27 08:38:16,412 | INFO     | sum of square deviations: 7960484140.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,415 | INFO     | sum of deviations: 32072513571.000008
[2026-01-27 09:39:23] 2026-01-27 08:38:16,415 | INFO     | mean x: 1769494110.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,415 | INFO     | mean y: 2508081.688135593
[2026-01-27 09:39:23] 2026-01-27 08:38:16,416 | INFO     | intersect: -7126722108.17059
[2026-01-27 09:39:23] 2026-01-27 08:38:16,416 | INFO     | chi2: 3.5310359383360606
[2026-01-27 09:39:23] 2026-01-27 08:38:16,416 | INFO     | current chi2=3.5310359383360606 (change=58.06745142757017 %)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,417 | INFO     | sum of square deviations: 7562532492.5
[2026-01-27 09:39:23] 2026-01-27 08:38:16,419 | INFO     | sum of deviations: -44443053101.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,420 | INFO     | mean x: 1769494262.5
[2026-01-27 09:39:23] 2026-01-27 08:38:16,420 | INFO     | mean y: 2537352.420689655
[2026-01-27 09:39:23] 2026-01-27 08:38:16,420 | INFO     | intersect: 10401398785.174044
[2026-01-27 09:39:23] 2026-01-27 08:38:16,420 | INFO     | chi2: 1.0273734919156596
[2026-01-27 09:39:23] 2026-01-27 08:38:16,420 | INFO     | current chi2=1.0273734919156596 (change=70.90447364860887 %)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,421 | INFO     | sum of square deviations: 7178069470.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,424 | INFO     | sum of deviations: -54679456939.99999
[2026-01-27 09:39:23] 2026-01-27 08:38:16,424 | INFO     | mean x: 1769494415.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,424 | INFO     | mean y: 2541390.09122807
[2026-01-27 09:39:23] 2026-01-27 08:38:16,424 | INFO     | intersect: 13481791496.953594
[2026-01-27 09:39:23] 2026-01-27 08:38:16,424 | INFO     | chi2: 0.9514498848931595
[2026-01-27 09:39:23] 2026-01-27 08:38:16,424 | INFO     | current chi2=0.9514498848931595 (change=7.390068715996511 %)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,425 | INFO     | left removable region: 30
[2026-01-27 09:39:23] 2026-01-27 08:38:16,425 | INFO     | sum of square deviations: 5705372090.0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,440 | INFO     | sum of deviations: -13095057514.000002
[2026-01-27 09:39:23] 2026-01-27 08:38:16,441 | INFO     | mean x: 1769494689.5
[2026-01-27 09:39:23] 2026-01-27 08:38:16,441 | INFO     | mean y: 2539692.484848485
[2026-01-27 09:39:23] 2026-01-27 08:38:16,441 | INFO     | intersect: 4063911039.38329
[2026-01-27 09:39:23] 2026-01-27 08:38:16,441 | INFO     | chi2: 0.10557175361413454
[2026-01-27 09:39:23] 2026-01-27 08:38:16,442 | INFO     | current memory leak: -2.30 B/s (using 264 data points, chi2=0.11)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,442 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | ..............................
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | . Timing measurements:
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | . get job = 0 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | . initial setup = 126 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | . payload setup = 163 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | . stage-in = 0 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,443 | INFO     | . payload execution = 18387 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,444 | INFO     | . stage-out = 4 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,444 | INFO     | . log creation = 1 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,444 | INFO     | ..............................
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | 
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | job summary report
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | --------------------------------------------------
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | PanDA job id: 6983602285
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | task id: 48329598
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | errors: (none)
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 09:39:23] 2026-01-27 08:38:16,600 | INFO     | pilot state: finished 
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | transexitcode: 0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | exeerrorcode: 0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | exeerrordiag: 
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | exitcode: 0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | exitmsg: OK
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | cpuconsumptiontime: 81947 s
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | nevents: 400
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | neventsw: 0
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | pid: 9217
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | pgrp: 9217
[2026-01-27 09:39:23] 2026-01-27 08:38:16,601 | INFO     | corecount: 8
[2026-01-27 09:39:23] 2026-01-27 08:38:16,602 | INFO     | event service: False
[2026-01-27 09:39:23] 2026-01-27 08:38:16,602 | INFO     | sizes: {0: 2283267, 1: 2283953, 2: 2284414, 12: 2284414, 18554: 2316981, 18555: 2316980, 18559: 2326164, 18561: 2326414}
[2026-01-27 09:39:23] 2026-01-27 08:38:16,602 | INFO     | --------------------------------------------------
[2026-01-27 09:39:23] 2026-01-27 08:38:16,602 | INFO     | 
[2026-01-27 09:39:23] 2026-01-27 08:38:16,602 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2026-01-27 09:39:23] 2026-01-27 08:38:16,900 | INFO     | time since job start (18574s) is within the limit (349056.0s)
[2026-01-27 09:39:23] 2026-01-27 08:38:17,058 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,058 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,058 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | job 6983602285 has completed (purged errors)
[2026-01-27 09:39:23] 2026-01-27 08:38:17,060 | INFO     | overall cleanup function is called
[2026-01-27 09:39:23] 2026-01-27 08:38:18,069 | INFO     | --- collectZombieJob: --- 10, [9217]
[2026-01-27 09:39:23] 2026-01-27 08:38:18,069 | INFO     | zombie collector waiting for pid 9217
[2026-01-27 09:39:23] 2026-01-27 08:38:18,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 09:39:23] 2026-01-27 08:38:18,069 | INFO     | collected zombie processes
[2026-01-27 09:39:23] 2026-01-27 08:38:18,069 | INFO     | will attempt to kill all subprocesses of pid=9217
[2026-01-27 09:39:23] 2026-01-27 08:38:18,154 | INFO     | process IDs to be killed: [9217] (in reverse order)
[2026-01-27 09:39:23] 2026-01-27 08:38:19,144 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 09:39:23] 2026-01-27 08:38:19,144 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 09:39:23] 2026-01-27 08:38:19,147 | INFO     | did not find any defunct processes belonging to 9217
[2026-01-27 09:39:23] 2026-01-27 08:38:19,148 | INFO     | did not find any defunct processes belonging to 9217
[2026-01-27 09:39:23] 2026-01-27 08:38:19,149 | INFO     | ready for new job
[2026-01-27 09:39:23] 2026-01-27 08:38:19,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 09:39:23] 2026-01-27 08:38:19,151 | INFO     | **************************************
[2026-01-27 09:39:23] 2026-01-27 08:38:19,151 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 09:39:23] 2026-01-27 08:38:19,151 | INFO     | **************************************
[2026-01-27 09:39:23] 2026-01-27 08:38:19,151 | INFO     | 
[2026-01-27 09:39:23] 2026-01-27 08:38:19,152 | INFO     | pilot is running in a VM
[2026-01-27 09:39:23] 2026-01-27 08:38:19,152 | INFO     | architecture information:
[2026-01-27 09:39:23] 2026-01-27 08:38:19,162 | INFO     | executing command: cat /etc/os-release
[2026-01-27 09:39:23] 2026-01-27 08:38:19,475 | INFO     | cat /etc/os-release:
[2026-01-27 09:39:23] NAME="CentOS Linux"
[2026-01-27 09:39:23] VERSION="7 (Core)"
[2026-01-27 09:39:23] ID="centos"
[2026-01-27 09:39:23] ID_LIKE="rhel fedora"
[2026-01-27 09:39:23] VERSION_ID="7"
[2026-01-27 09:39:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 09:39:23] ANSI_COLOR="0;31"
[2026-01-27 09:39:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 09:39:23] HOME_URL="https://www.centos.org/"
[2026-01-27 09:39:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 09:39:23] 
[2026-01-27 09:39:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 09:39:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 09:39:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 09:39:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 09:39:23] 
[2026-01-27 09:39:23] 2026-01-27 08:38:19,475 | INFO     | **************************************
[2026-01-27 09:39:23] 2026-01-27 08:38:19,979 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2026-01-27 09:39:23] 2026-01-27 08:38:20,282 | INFO     | sufficient remaining disk space (495321088000 B)
[2026-01-27 09:39:23] 2026-01-27 08:38:20,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 09:39:23] 2026-01-27 08:38:20,282 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 09:39:23] 2026-01-27 08:38:20,282 | INFO     | update_server=False
[2026-01-27 09:39:23] 2026-01-27 08:38:20,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 09:39:23] 2026-01-27 08:38:20,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:39:23] 2026-01-27 08:38:20,283 | INFO     | aborting loop
[2026-01-27 09:39:23] 2026-01-27 08:38:20,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 09:39:23] 2026-01-27 08:38:20,710 | INFO     | all data control threads have been joined
[2026-01-27 09:39:23] 2026-01-27 08:38:21,288 | INFO     | [job] retrieve thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:21,288 | INFO     | [job] job monitor thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:21,435 | INFO     | all job control threads have been joined
[2026-01-27 09:39:23] 2026-01-27 08:38:21,582 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:21,600 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:21,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:39:23] 2026-01-27 08:38:21,716 | INFO     | [data] control thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:21,737 | INFO     | all payload control threads have been joined
[2026-01-27 09:39:23] 2026-01-27 08:38:22,013 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,298 | INFO     | [data] copytool_out thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 09:39:23] 2026-01-27 08:38:22,382 | INFO     | [payload] validate_post thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,406 | INFO     | [payload] failed_post thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,432 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,433 | INFO     | [data] copytool_in thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,441 | INFO     | [job] control thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,625 | INFO     | [job] queue monitor thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,743 | INFO     | [payload] control thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:22,758 | INFO     | [job] validate thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:26,330 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 09:39:23] 2026-01-27 08:38:50,053 | INFO     | PID=4784 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 09:39:23] 2026-01-27 08:38:50,053 | INFO     | .. there are 2 such processes running
[2026-01-27 09:39:23] 2026-01-27 08:38:50,054 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 09:39:23] 2026-01-27 08:38:50,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 09:39:23] 2026-01-27 08:38:50,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 09:39:23] 2026-01-27 08:39:13,505 | INFO     | [monitor] cgroup control has ended
[2026-01-27 09:39:23] 2026-01-27 08:39:14,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649601091392)>', '<ExcThread(monitor, started 140649038870272)>']
[2026-01-27 09:39:23] 2026-01-27 08:39:15,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 09:39:23] 2026-01-27 08:39:15,204 | INFO     | [monitor] control thread has ended
[2026-01-27 09:39:23] 2026-01-27 08:39:19,802 | INFO     | all workflow threads have been joined
[2026-01-27 09:39:23] 2026-01-27 08:39:19,802 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 09:39:23] 2026-01-27 08:39:19,802 | INFO     | traces error code: 0
[2026-01-27 09:39:23] 2026-01-27 08:39:19,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 09:39:23] 2026-01-27 08:39:20,268 [wrapper] ==== pilot stdout END ====
[2026-01-27 09:39:23] 2026-01-27 08:39:20,387 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 09:39:23] 2026-01-27 08:39:20,512 [wrapper] pilotpid: 4784
[2026-01-27 09:39:23] 2026-01-27 08:39:20,645 [wrapper] Pilot exit status: 0
[2026-01-27 09:39:23] 2026-01-27 08:39:21,033 [wrapper] pandaids: 6983602285
[2026-01-27 09:39:23] 2026-01-27 08:39:22,039 [wrapper] cleanup supervisor_pilot 32044 4785
[2026-01-27 09:39:23] 2026-01-27 08:39:22,128 [wrapper] Test setup, not cleaning
[2026-01-27 09:39:23] 2026-01-27 08:39:22,178 [wrapper] apfmon messages muted
[2026-01-27 09:39:23] 2026-01-27 08:39:22,230 [wrapper] ==== wrapper stdout END ====
[2026-01-27 09:39:23] 2026-01-27 08:39:22,316 [wrapper] ==== wrapper stderr END ====
[2026-01-27 09:39:23]  *** Error codes and diagnostics ***
[2026-01-27 09:39:23]     "exeErrorCode": 0,
[2026-01-27 09:39:23]     "exeErrorDiag": "",
[2026-01-27 09:39:23]     "pilotErrorCode": 0,
[2026-01-27 09:39:23]     "pilotErrorDiag": "",
[2026-01-27 09:39:23]  *** Listing of results directory ***
[2026-01-27 09:39:23] total 469088
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 09:39:23] -rwx------. 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc       100 Jan 27 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 09:39:23] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 04:21 run_atlas
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc       105 Jan 27 04:21 job.xml
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc      6392 Jan 27 04:21 init_data.xml
[2026-01-27 09:39:23] -rw-r--r--. 2 boinc boinc 273434957 Jan 27 04:21 EVNT.48329596._000004.pool.root.1
[2026-01-27 09:39:23] -rw-r--r--. 2 boinc boinc     15845 Jan 27 04:21 start_atlas.sh
[2026-01-27 09:39:23] drwxrwx--x. 2 boinc boinc        68 Jan 27 04:21 shared
[2026-01-27 09:39:23] -rw-r--r--. 2 boinc boinc    597777 Jan 27 04:21 input.tar.gz
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc         0 Jan 27 04:21 boinc_lockfile
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc      2607 Jan 27 04:22 pandaJob.out
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc       413 Jan 27 04:28 workernode_map.json
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc   1006433 Jan 27 04:28 agis_schedconf.cvmfs.json
[2026-01-27 09:39:23] drwx------. 5 boinc boinc      4096 Jan 27 04:28 pilot3
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc 196691964 Jan 27 09:36 HITS.48329598._000100.pool.root.1
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc       530 Jan 27 09:37 boinc_task_state.xml
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc      1020 Jan 27 09:38 memory_monitor_summary.json
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc   1516246 Jan 27 09:38 agis_ddmendpoints.agis.ALL.json
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc    536795 Jan 27 09:38 log.48329598._000100.job.log.tgz.1
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc      6313 Jan 27 09:38 heartbeat.json
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc        95 Jan 27 09:38 pilot_heartbeat.json
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc        28 Jan 27 09:39 wrapper_checkpoint.txt
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc      8192 Jan 27 09:39 boinc_mmap_file
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc      4880 Jan 27 09:39 pilotlog.txt
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc   2606983 Jan 27 09:39 log.48329598._000100.job.log.1
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc       357 Jan 27 09:39 output.list
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc       620 Jan 27 09:39 runtime_log
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc   3164160 Jan 27 09:39 result.tar.gz
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc      8832 Jan 27 09:39 runtime_log.err
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc       655 Jan 27 09:39 5UAMDmONQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmup8KDmzd3wWn.diag
[2026-01-27 09:39:23] -rw-r--r--. 1 boinc boinc     20714 Jan 27 09:39 stderr.txt
[2026-01-27 09:39:23] HITS file was successfully produced:
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc 196691964 Jan 27 09:36 shared/HITS.pool.root.1
[2026-01-27 09:39:23]  *** Contents of shared directory: ***
[2026-01-27 09:39:23] total 462804
[2026-01-27 09:39:23] -rw-r--r--. 2 boinc boinc 273434957 Jan 27 04:21 ATLAS.root_0
[2026-01-27 09:39:23] -rw-r--r--. 2 boinc boinc     15845 Jan 27 04:21 start_atlas.sh
[2026-01-27 09:39:23] -rw-r--r--. 2 boinc boinc    597777 Jan 27 04:21 input.tar.gz
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc 196691964 Jan 27 09:36 HITS.pool.root.1
[2026-01-27 09:39:23] -rw-------. 1 boinc boinc   3164160 Jan 27 09:39 result.tar.gz
09:39:25 (788): run_atlas exited; CPU time 82142.478205
09:39:25 (788): called boinc_finish(0)

</stderr_txt>
]]>

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