Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:10:03 (414444): wrapper (7.7.26015): starting
09:10:03 (414444): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 09:10:03] Arguments: --nthreads 4
[2026-01-27 09:10:03] Threads: 4
[2026-01-27 09:10:03] Checking for CVMFS
[2026-01-27 09:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 09:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 09:10:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 09:10:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 09:10:03] 2.9.2.0 2785857 9651 105088 155577 0 50 24580882 36864001 0 130560 0 5069809 99.988 310778 6728 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 09:10:03] CVMFS is ok
[2026-01-27 09:10:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 09:10:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 09:10:03] Further information can be found at the LHC@home message board.
[2026-01-27 09:10:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 09:10:03] Checking for apptainer binary...
[2026-01-27 09:10:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 09:10:03] Running /usr/bin/apptainer --version
[2026-01-27 09:10:03] apptainer version 1.4.1-1.1
[2026-01-27 09:10:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 09:10:03] thA314a
[2026-01-27 09:10:03] apptainer works
[2026-01-27 09:10:03] Set ATHENA_PROC_NUMBER=4
[2026-01-27 09:10:03] Set ATHENA_CORE_NUMBER=4
[2026-01-27 09:10:03] Starting ATLAS job with PandaID=6983771508
[2026-01-27 09:10:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 10:14:35]  *** The last 200 lines of the pilot log: ***
[2026-01-27 10:14:35] 2026-01-27 09:14:03,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | job 6983771508 has completed (purged errors)
[2026-01-27 10:14:35] 2026-01-27 09:14:03,082 | INFO     | overall cleanup function is called
[2026-01-27 10:14:35] 2026-01-27 09:14:03,136 | INFO     | PID=418562 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 10:14:35] 2026-01-27 09:14:04,089 | INFO     | --- collectZombieJob: --- 10, [423078]
[2026-01-27 10:14:35] 2026-01-27 09:14:04,090 | INFO     | zombie collector waiting for pid 423078
[2026-01-27 10:14:35] 2026-01-27 09:14:04,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 10:14:35] 2026-01-27 09:14:04,090 | INFO     | collected zombie processes
[2026-01-27 10:14:35] 2026-01-27 09:14:04,090 | INFO     | will attempt to kill all subprocesses of pid=423078
[2026-01-27 10:14:35] 2026-01-27 09:14:04,140 | INFO     | process IDs to be killed: [423078] (in reverse order)
[2026-01-27 10:14:35] 2026-01-27 09:14:04,173 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 10:14:35] 2026-01-27 09:14:04,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 10:14:35] 2026-01-27 09:14:04,175 | INFO     | did not find any defunct processes belonging to 423078
[2026-01-27 10:14:35] 2026-01-27 09:14:04,177 | INFO     | did not find any defunct processes belonging to 423078
[2026-01-27 10:14:35] 2026-01-27 09:14:04,177 | INFO     | ready for new job
[2026-01-27 10:14:35] 2026-01-27 09:14:04,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 10:14:35] 2026-01-27 09:14:04,178 | INFO     | **************************************
[2026-01-27 10:14:35] 2026-01-27 09:14:04,178 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 10:14:35] 2026-01-27 09:14:04,178 | INFO     | **************************************
[2026-01-27 10:14:35] 2026-01-27 09:14:04,178 | INFO     | 
[2026-01-27 10:14:35] 2026-01-27 09:14:04,178 | INFO     | architecture information:
[2026-01-27 10:14:35] 2026-01-27 09:14:04,178 | INFO     | executing command: cat /etc/os-release
[2026-01-27 10:14:35] 2026-01-27 09:14:04,191 | INFO     | cat /etc/os-release:
[2026-01-27 10:14:35] NAME="CentOS Linux"
[2026-01-27 10:14:35] VERSION="7 (Core)"
[2026-01-27 10:14:35] ID="centos"
[2026-01-27 10:14:35] ID_LIKE="rhel fedora"
[2026-01-27 10:14:35] VERSION_ID="7"
[2026-01-27 10:14:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 10:14:35] ANSI_COLOR="0;31"
[2026-01-27 10:14:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 10:14:35] HOME_URL="https://www.centos.org/"
[2026-01-27 10:14:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 10:14:35] 
[2026-01-27 10:14:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 10:14:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 10:14:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 10:14:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 10:14:35] 
[2026-01-27 10:14:35] 2026-01-27 09:14:04,192 | INFO     | **************************************
[2026-01-27 10:14:35] 2026-01-27 09:14:04,695 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | INFO     | sufficient remaining disk space (233452863488 B)
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | INFO     | update_server=False
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 10:14:35] 2026-01-27 09:14:04,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 10:14:35] 2026-01-27 09:14:04,714 | INFO     | aborting loop
[2026-01-27 10:14:35] 2026-01-27 09:14:04,886 | INFO     | all data control threads have been joined
[2026-01-27 10:14:35] 2026-01-27 09:14:05,049 | INFO     | all payload control threads have been joined
[2026-01-27 10:14:35] 2026-01-27 09:14:05,719 | INFO     | [job] retrieve thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:05,719 | INFO     | [job] queue monitor thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:05,719 | INFO     | [job] job monitor thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:05,821 | INFO     | [data] copytool_in thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:05,891 | INFO     | [data] control thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:06,054 | INFO     | [payload] control thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:06,173 | INFO     | [payload] failed_post thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:06,185 | INFO     | all job control threads have been joined
[2026-01-27 10:14:35] 2026-01-27 09:14:06,296 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:06,719 | INFO     | [data] copytool_out thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:06,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 10:14:35] 2026-01-27 09:14:06,835 | INFO     | [payload] validate_post thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:07,026 | INFO     | [job] validate thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:07,060 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:07,107 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:07,191 | INFO     | [job] control thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:07,211 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:10,732 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 10:14:35] 2026-01-27 09:14:20,043 | INFO     | [monitor] cgroup control has ended
[2026-01-27 10:14:35] 2026-01-27 09:14:21,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636962772800)>', '<ExcThread(monitor, started 140636464334592)>']
[2026-01-27 10:14:35] 2026-01-27 09:14:26,075 | INFO     | all workflow threads have been joined
[2026-01-27 10:14:35] 2026-01-27 09:14:26,075 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 10:14:35] 2026-01-27 09:14:26,075 | INFO     | traces error code: 0
[2026-01-27 10:14:35] 2026-01-27 09:14:26,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 10:14:35] 2026-01-27 09:14:35,314 | INFO     | PID=418562 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 10:14:35] 2026-01-27 09:14:35,314 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 10:14:35] 2026-01-27 09:14:35,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 10:14:35] 2026-01-27 09:14:35,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 10:14:35] 2026-01-27 09:14:35,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 10:14:35] 2026-01-27 09:14:35,315 | CRITICAL | thread 'MainThread' is not alive
[2026-01-27 10:14:35] 2026-01-27 09:14:35,315 | INFO     | [monitor] control thread has ended
[2026-01-27 10:14:35] 2026-01-27 09:14:35,392 [wrapper] ==== pilot stdout END ====
[2026-01-27 10:14:35] 2026-01-27 09:14:35,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 10:14:35] 2026-01-27 09:14:35,399 [wrapper] pilotpid: 418562
[2026-01-27 10:14:35] 2026-01-27 09:14:35,403 [wrapper] Pilot exit status: 0
[2026-01-27 10:14:35] 2026-01-27 09:14:35,414 [wrapper] pandaids: 6983771508
[2026-01-27 10:14:35] 2026-01-27 09:14:35,438 [wrapper] cleanup supervisor_pilot  428587 418563
[2026-01-27 10:14:35] 2026-01-27 09:14:35,442 [wrapper] Test setup, not cleaning
[2026-01-27 10:14:35] 2026-01-27 09:14:35,445 [wrapper] apfmon messages muted
[2026-01-27 10:14:35] 2026-01-27 09:14:35,449 [wrapper] ==== wrapper stdout END ====
[2026-01-27 10:14:35] 2026-01-27 09:14:35,452 [wrapper] ==== wrapper stderr END ====
[2026-01-27 10:14:35]  *** Error codes and diagnostics ***
[2026-01-27 10:14:35]     "exeErrorCode": 0,
[2026-01-27 10:14:35]     "exeErrorDiag": "",
[2026-01-27 10:14:35]     "pilotErrorCode": 0,
[2026-01-27 10:14:35]     "pilotErrorDiag": "",
[2026-01-27 10:14:35]  *** Listing of results directory ***
[2026-01-27 10:14:35] total 668096
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:12 queuedata.json
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 10:14:35] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc       100 Jan 27 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 10:14:35] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 09:10 run_atlas
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc       105 Jan 27 09:10 job.xml
[2026-01-27 10:14:35] -rw-r--r-- 2 boinc boinc 498535605 Jan 27 09:10 EVNT.48310665._000203.pool.root.1
[2026-01-27 10:14:35] -rw-r--r-- 2 boinc boinc    597772 Jan 27 09:10 input.tar.gz
[2026-01-27 10:14:35] -rw-r--r-- 2 boinc boinc     15845 Jan 27 09:10 start_atlas.sh
[2026-01-27 10:14:35] drwxrwx--x 2 boinc boinc      4096 Jan 27 09:10 shared
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc         0 Jan 27 09:10 boinc_setup_complete
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc      6371 Jan 27 09:10 init_data.xml
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc         0 Jan 27 09:10 boinc_lockfile
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc      2524 Jan 27 09:10 pandaJob.out
[2026-01-27 10:14:35] -rw------- 1 boinc boinc   1003573 Jan 27 09:10 agis_schedconf.cvmfs.json
[2026-01-27 10:14:35] -rw------- 1 boinc boinc   1516246 Jan 27 09:10 agis_ddmendpoints.agis.ALL.json
[2026-01-27 10:14:35] -rw------- 1 boinc boinc       428 Jan 27 09:10 workernode_map.json
[2026-01-27 10:14:35] drwx------ 5 boinc boinc      4096 Jan 27 09:10 pilot3
[2026-01-27 10:14:35] -rw------- 1 boinc boinc 179964864 Jan 27 10:13 HITS.48310670._010722.pool.root.1
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc       530 Jan 27 10:13 boinc_task_state.xml
[2026-01-27 10:14:35] -rw------- 1 boinc boinc      1019 Jan 27 10:13 memory_monitor_summary.json
[2026-01-27 10:14:35] -rw------- 1 boinc boinc    278258 Jan 27 10:13 log.48310670._010722.job.log.tgz.1
[2026-01-27 10:14:35] -rw------- 1 boinc boinc      6314 Jan 27 10:14 heartbeat.json
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc      8192 Jan 27 10:14 boinc_mmap_file
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc        27 Jan 27 10:14 wrapper_checkpoint.txt
[2026-01-27 10:14:35] -rw------- 1 boinc boinc       816 Jan 27 10:14 pilotlog.txt
[2026-01-27 10:14:35] -rw------- 1 boinc boinc        95 Jan 27 10:14 pilot_heartbeat.json
[2026-01-27 10:14:35] -rw------- 1 boinc boinc    572455 Jan 27 10:14 log.48310670._010722.job.log.1
[2026-01-27 10:14:35] -rw------- 1 boinc boinc       357 Jan 27 10:14 output.list
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc       620 Jan 27 10:14 runtime_log
[2026-01-27 10:14:35] -rw------- 1 boinc boinc    870400 Jan 27 10:14 result.tar.gz
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc      8901 Jan 27 10:14 runtime_log.err
[2026-01-27 10:14:35] -rw------- 1 boinc boinc       658 Jan 27 10:14 779MDmIKQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg71KDmIgRDYo.diag
[2026-01-27 10:14:35] -rw-r--r-- 1 boinc boinc     12338 Jan 27 10:14 stderr.txt
[2026-01-27 10:14:35] HITS file was successfully produced:
[2026-01-27 10:14:35] -rw------- 1 boinc boinc 179964864 Jan 27 10:13 shared/HITS.pool.root.1
[2026-01-27 10:14:35]  *** Contents of shared directory: ***
[2026-01-27 10:14:35] total 664060
[2026-01-27 10:14:35] -rw-r--r-- 2 boinc boinc 498535605 Jan 27 09:10 ATLAS.root_0
[2026-01-27 10:14:35] -rw-r--r-- 2 boinc boinc    597772 Jan 27 09:10 input.tar.gz
[2026-01-27 10:14:35] -rw-r--r-- 2 boinc boinc     15845 Jan 27 09:10 start_atlas.sh
[2026-01-27 10:14:35] -rw------- 1 boinc boinc 179964864 Jan 27 10:13 HITS.pool.root.1
[2026-01-27 10:14:35] -rw------- 1 boinc boinc    870400 Jan 27 10:14 result.tar.gz
10:14:37 (414444): run_atlas exited; CPU time 14260.955490
10:14:37 (414444): called boinc_finish(0)

</stderr_txt>
]]>

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