Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:23:42 (1357446): wrapper (7.7.26015): starting
08:23:42 (1357446): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 08:23:42] Arguments: --nthreads 4
[2026-01-27 08:23:42] Threads: 4
[2026-01-27 08:23:42] Checking for CVMFS
[2026-01-27 08:23:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 08:23:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 08:23:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 08:23:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 08:23:43] 2.9.2.0 3657875 9516 106496 155577 1 50 22317380 36864000 0 130560 0 5346154 99.989 313976 6287 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 08:23:43] CVMFS is ok
[2026-01-27 08:23:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 08:23:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 08:23:43] Further information can be found at the LHC@home message board.
[2026-01-27 08:23:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 08:23:43] Checking for apptainer binary...
[2026-01-27 08:23:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 08:23:43] Running /usr/bin/apptainer --version
[2026-01-27 08:23:43] apptainer version 1.4.1-1.1
[2026-01-27 08:23:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 08:23:43] magicA244a
[2026-01-27 08:23:43] apptainer works
[2026-01-27 08:23:43] Set ATHENA_PROC_NUMBER=4
[2026-01-27 08:23:43] Set ATHENA_CORE_NUMBER=4
[2026-01-27 08:23:43] Starting ATLAS job with PandaID=6984043414
[2026-01-27 08:23:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 09:34:09]  *** The last 200 lines of the pilot log: ***
[2026-01-27 09:34:09] 2026-01-27 08:33:37,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 09:34:09] 2026-01-27 08:33:37,468 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 09:34:09] 2026-01-27 08:33:37,468 | INFO     | job 6984043414 has completed (purged errors)
[2026-01-27 09:34:09] 2026-01-27 08:33:37,469 | INFO     | overall cleanup function is called
[2026-01-27 09:34:09] 2026-01-27 08:33:38,475 | INFO     | --- collectZombieJob: --- 10, [1366073]
[2026-01-27 09:34:09] 2026-01-27 08:33:38,475 | INFO     | zombie collector waiting for pid 1366073
[2026-01-27 09:34:09] 2026-01-27 08:33:38,475 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 09:34:09] 2026-01-27 08:33:38,475 | INFO     | collected zombie processes
[2026-01-27 09:34:09] 2026-01-27 08:33:38,475 | INFO     | will attempt to kill all subprocesses of pid=1366073
[2026-01-27 09:34:09] 2026-01-27 08:33:38,519 | INFO     | process IDs to be killed: [1366073] (in reverse order)
[2026-01-27 09:34:09] 2026-01-27 08:33:38,546 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 09:34:09] 2026-01-27 08:33:38,546 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 09:34:09] 2026-01-27 08:33:38,548 | INFO     | did not find any defunct processes belonging to 1366073
[2026-01-27 09:34:09] 2026-01-27 08:33:38,549 | INFO     | did not find any defunct processes belonging to 1366073
[2026-01-27 09:34:09] 2026-01-27 08:33:38,549 | INFO     | ready for new job
[2026-01-27 09:34:09] 2026-01-27 08:33:38,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 09:34:09] 2026-01-27 08:33:38,550 | INFO     | **************************************
[2026-01-27 09:34:09] 2026-01-27 08:33:38,550 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 09:34:09] 2026-01-27 08:33:38,550 | INFO     | **************************************
[2026-01-27 09:34:09] 2026-01-27 08:33:38,550 | INFO     | 
[2026-01-27 09:34:09] 2026-01-27 08:33:38,550 | INFO     | architecture information:
[2026-01-27 09:34:09] 2026-01-27 08:33:38,550 | INFO     | executing command: cat /etc/os-release
[2026-01-27 09:34:09] 2026-01-27 08:33:38,560 | INFO     | cat /etc/os-release:
[2026-01-27 09:34:09] NAME="CentOS Linux"
[2026-01-27 09:34:09] VERSION="7 (Core)"
[2026-01-27 09:34:09] ID="centos"
[2026-01-27 09:34:09] ID_LIKE="rhel fedora"
[2026-01-27 09:34:09] VERSION_ID="7"
[2026-01-27 09:34:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 09:34:09] ANSI_COLOR="0;31"
[2026-01-27 09:34:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 09:34:09] HOME_URL="https://www.centos.org/"
[2026-01-27 09:34:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 09:34:09] 
[2026-01-27 09:34:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 09:34:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 09:34:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 09:34:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 09:34:09] 
[2026-01-27 09:34:09] 2026-01-27 08:33:38,560 | INFO     | **************************************
[2026-01-27 09:34:09] 2026-01-27 08:33:39,063 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 09:34:09] 2026-01-27 08:33:39,076 | INFO     | sufficient remaining disk space (334668759040 B)
[2026-01-27 09:34:09] 2026-01-27 08:33:39,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 09:34:09] 2026-01-27 08:33:39,076 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 09:34:09] 2026-01-27 08:33:39,076 | INFO     | update_server=False
[2026-01-27 09:34:09] 2026-01-27 08:33:39,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 09:34:09] 2026-01-27 08:33:39,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:34:09] 2026-01-27 08:33:39,380 | INFO     | all data control threads have been joined
[2026-01-27 09:34:09] 2026-01-27 08:33:39,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:34:09] 2026-01-27 08:33:39,666 | INFO     | aborting loop
[2026-01-27 09:34:09] 2026-01-27 08:33:39,682 | INFO     | all payload control threads have been joined
[2026-01-27 09:34:09] 2026-01-27 08:33:40,082 | INFO     | [job] queue monitor thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:40,082 | INFO     | [job] retrieve thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:40,145 | INFO     | [payload] failed_post thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:40,386 | INFO     | [data] control thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:40,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 09:34:09] 2026-01-27 08:33:40,588 | INFO     | all job control threads have been joined
[2026-01-27 09:34:09] 2026-01-27 08:33:40,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 09:34:09] 2026-01-27 08:33:40,653 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:40,672 | INFO     | [job] job monitor thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:40,688 | INFO     | [payload] control thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:41,182 | INFO     | [payload] validate_post thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:41,214 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:41,215 | INFO     | [job] validate thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:41,363 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:41,454 | INFO     | [data] copytool_in thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:41,594 | INFO     | [job] control thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:42,493 | INFO     | [data] copytool_out thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:44,633 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:50,054 | INFO     | job.realtimelogging is not enabled
[2026-01-27 09:34:09] 2026-01-27 08:33:51,059 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 09:34:09] 2026-01-27 08:33:58,976 | INFO     | [monitor] cgroup control has ended
[2026-01-27 09:34:09] 2026-01-27 08:33:59,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186149971776)>', '<ExcThread(monitor, started 140185366943488)>']
[2026-01-27 09:34:09] 2026-01-27 08:34:04,912 | INFO     | all workflow threads have been joined
[2026-01-27 09:34:09] 2026-01-27 08:34:04,912 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 09:34:09] 2026-01-27 08:34:04,912 | INFO     | traces error code: 0
[2026-01-27 09:34:09] 2026-01-27 08:34:04,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 09:34:09] 2026-01-27 08:34:09,148 | INFO     | PID=1361557 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 09:34:09] 2026-01-27 08:34:09,148 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 09:34:09] 2026-01-27 08:34:09,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 09:34:09] 2026-01-27 08:34:09,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 09:34:09] 2026-01-27 08:34:09,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 09:34:09] 2026-01-27 08:34:09,149 | INFO     | [monitor] control thread has ended
[2026-01-27 09:34:09] 2026-01-27 08:34:09,198 [wrapper] ==== pilot stdout END ====
[2026-01-27 09:34:09] 2026-01-27 08:34:09,201 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 09:34:09] 2026-01-27 08:34:09,204 [wrapper] pilotpid: 1361557
[2026-01-27 09:34:09] 2026-01-27 08:34:09,206 [wrapper] Pilot exit status: 0
[2026-01-27 09:34:09] 2026-01-27 08:34:09,214 [wrapper] pandaids: 6984043414
[2026-01-27 09:34:09] 2026-01-27 08:34:09,231 [wrapper] cleanup supervisor_pilot 1371225 1361558
[2026-01-27 09:34:09] 2026-01-27 08:34:09,234 [wrapper] Test setup, not cleaning
[2026-01-27 09:34:09] 2026-01-27 08:34:09,236 [wrapper] apfmon messages muted
[2026-01-27 09:34:09] 2026-01-27 08:34:09,239 [wrapper] ==== wrapper stdout END ====
[2026-01-27 09:34:09] 2026-01-27 08:34:09,241 [wrapper] ==== wrapper stderr END ====
[2026-01-27 09:34:09]  *** Error codes and diagnostics ***
[2026-01-27 09:34:09]     "exeErrorCode": 0,
[2026-01-27 09:34:09]     "exeErrorDiag": "",
[2026-01-27 09:34:09]     "pilotErrorCode": 0,
[2026-01-27 09:34:09]     "pilotErrorDiag": "",
[2026-01-27 09:34:09]  *** Listing of results directory ***
[2026-01-27 09:34:09] total 722976
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 09:34:09] -rwx------ 1 boinc boinc     36322 Jan 26 06:14 runpilot2-wrapper.sh
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:15 queuedata.json
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc       100 Jan 27 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 09:34:09] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 08:23 run_atlas
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc       105 Jan 27 08:23 job.xml
[2026-01-27 09:34:09] -rw-r--r-- 2 boinc boinc 531071482 Jan 27 08:23 EVNT.48317909._000026.pool.root.1
[2026-01-27 09:34:09] drwxrwx--x 2 boinc boinc      4096 Jan 27 08:23 shared
[2026-01-27 09:34:09] -rw-r--r-- 2 boinc boinc    597758 Jan 27 08:23 input.tar.gz
[2026-01-27 09:34:09] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:23 start_atlas.sh
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:23 boinc_setup_complete
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc      6438 Jan 27 08:23 init_data.xml
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:23 boinc_lockfile
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc      2498 Jan 27 08:23 pandaJob.out
[2026-01-27 09:34:09] -rw------- 1 boinc boinc   1003573 Jan 27 08:23 agis_schedconf.cvmfs.json
[2026-01-27 09:34:09] -rw------- 1 boinc boinc   1516246 Jan 27 08:23 agis_ddmendpoints.agis.ALL.json
[2026-01-27 09:34:09] -rw------- 1 boinc boinc       427 Jan 27 08:23 workernode_map.json
[2026-01-27 09:34:09] drwx------ 5 boinc boinc      4096 Jan 27 08:23 pilot3
[2026-01-27 09:34:09] -rw------- 1 boinc boinc        95 Jan 27 09:33 pilot_heartbeat.json
[2026-01-27 09:34:09] -rw------- 1 boinc boinc 203501105 Jan 27 09:33 HITS.48317911._000763.pool.root.1
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc       530 Jan 27 09:33 boinc_task_state.xml
[2026-01-27 09:34:09] -rw------- 1 boinc boinc      1019 Jan 27 09:33 memory_monitor_summary.json
[2026-01-27 09:34:09] -rw------- 1 boinc boinc    291946 Jan 27 09:33 log.48317911._000763.job.log.tgz.1
[2026-01-27 09:34:09] -rw------- 1 boinc boinc      6313 Jan 27 09:33 heartbeat.json
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc      8192 Jan 27 09:33 boinc_mmap_file
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc        27 Jan 27 09:33 wrapper_checkpoint.txt
[2026-01-27 09:34:09] -rw------- 1 boinc boinc       747 Jan 27 09:34 pilotlog.txt
[2026-01-27 09:34:09] -rw------- 1 boinc boinc    622211 Jan 27 09:34 log.48317911._000763.job.log.1
[2026-01-27 09:34:09] -rw------- 1 boinc boinc       357 Jan 27 09:34 output.list
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc       620 Jan 27 09:34 runtime_log
[2026-01-27 09:34:09] -rw------- 1 boinc boinc    931840 Jan 27 09:34 result.tar.gz
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc      8916 Jan 27 09:34 runtime_log.err
[2026-01-27 09:34:09] -rw------- 1 boinc boinc       661 Jan 27 09:34 4WIKDmK7T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR78KDmMgrARn.diag
[2026-01-27 09:34:09] -rw-r--r-- 1 boinc boinc     11111 Jan 27 09:34 stderr.txt
[2026-01-27 09:34:09] HITS file was successfully produced:
[2026-01-27 09:34:09] -rw------- 1 boinc boinc 203501105 Jan 27 09:33 shared/HITS.pool.root.1
[2026-01-27 09:34:09]  *** Contents of shared directory: ***
[2026-01-27 09:34:09] total 718880
[2026-01-27 09:34:09] -rw-r--r-- 2 boinc boinc 531071482 Jan 27 08:23 ATLAS.root_0
[2026-01-27 09:34:09] -rw-r--r-- 2 boinc boinc    597758 Jan 27 08:23 input.tar.gz
[2026-01-27 09:34:09] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:23 start_atlas.sh
[2026-01-27 09:34:09] -rw------- 1 boinc boinc 203501105 Jan 27 09:33 HITS.pool.root.1
[2026-01-27 09:34:09] -rw------- 1 boinc boinc    931840 Jan 27 09:34 result.tar.gz
09:34:11 (1357446): run_atlas exited; CPU time 15696.225663
09:34:11 (1357446): called boinc_finish(0)

</stderr_txt>
]]>

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