Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:58:18 (2907078): wrapper (7.7.26015): starting
12:58:18 (2907078): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 12:58:19] Arguments: --nthreads 8
[2026-01-26 12:58:19] Threads: 8
[2026-01-26 12:58:19] Checking for CVMFS
[2026-01-26 12:58:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 12:58:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 12:58:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 12:58:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 12:58:21] 2.13.3.0 7385 118157 240028 155555 2 726 19363283 32503808 44327 16776704 0 1332902238 99.606 1393095813 49395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 12:58:21] CVMFS is ok
[2026-01-26 12:58:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 12:58:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 12:58:21] Further information can be found at the LHC@home message board.
[2026-01-26 12:58:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:58:21] Checking for apptainer binary...
[2026-01-26 12:58:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 12:58:21] Running /usr/bin/apptainer --version
[2026-01-26 12:58:21] apptainer version 1.4.5-2.el9
[2026-01-26 12:58:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:58:22] c8-7-1.aglt2.org
[2026-01-26 12:58:22] apptainer works
[2026-01-26 12:58:22] Set ATHENA_PROC_NUMBER=8
[2026-01-26 12:58:22] Set ATHENA_CORE_NUMBER=8
[2026-01-26 12:58:22] Starting ATLAS job with PandaID=6983328354
[2026-01-26 12:58:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 14:23:24]  *** The last 200 lines of the pilot log: ***
[2026-01-26 14:23:24]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6983328354/log.48318034._001330.job.log.tgz.1
[2026-01-26 14:23:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/cb/log.48318034._001330.job.log.tgz.1
[2026-01-26 14:23:24]  workdir=None
[2026-01-26 14:23:24] ]
[2026-01-26 14:23:24] 2026-01-26 19:22:25,875 | INFO     | time since job start (4935s) is within the limit (349056.0s)
[2026-01-26 14:23:24] 2026-01-26 19:22:25,896 | INFO     | transferring file log.48318034._001330.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6983328354/log.48318034._001330.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 14:23:24] 2026-01-26 19:22:25,896 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6983328354/log.48318034._001330.job.log.tgz.1 /tmp/boinchome/slots/1/log.48318034._001330.job
[2026-01-26 14:23:24] 2026-01-26 19:22:25,959 | INFO     | adding to output.list: log.48318034._001330.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/cb/log.48318034._001330.job.log.tg
[2026-01-26 14:23:24] 2026-01-26 19:22:25,959 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 14:23:24] 2026-01-26 19:22:25,959 | INFO     | summary of transferred files:
[2026-01-26 14:23:24] 2026-01-26 19:22:25,959 | INFO     |  -- lfn=log.48318034._001330.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 14:23:24] 2026-01-26 19:22:25,960 | INFO     | stage-out finished correctly
[2026-01-26 14:23:24] 2026-01-26 19:22:27,889 | INFO     | time since job start (4937s) is within the limit (349056.0s)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,698 | WARNING  | process 2939529 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 14:23:24] 2026-01-26 19:22:28,698 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6983328354/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,699 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3984627 B
[2026-01-26 14:23:24] 2026-01-26 19:22:28,699 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16791 B
[2026-01-26 14:23:24] 2026-01-26 19:22:28,699 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-26 14:23:24] 2026-01-26 19:22:28,720 | INFO     | sufficient remaining disk space (88592089088 B)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,723 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,724 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6983328354: 4286684 B (within 5033164800 B limit)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,724 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6983328354/HITS.48318034._001330.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,724 | INFO     | total size of present files: 0 B (workdir size: 4286684 B)
[2026-01-26 14:23:24] 2026-01-26 19:22:28,724 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6983328354/HITS.48318034._001330.pool.root.1 since it does not exist
[2026-01-26 14:23:24] 2026-01-26 19:22:28,762 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 14:23:24] 2026-01-26 19:22:29,372 | INFO     | number of running child processes to parent process 2939529: 1
[2026-01-26 14:23:24] 2026-01-26 19:22:29,372 | INFO     | maximum number of monitored processes: 6
[2026-01-26 14:23:24] 2026-01-26 19:22:29,909 | INFO     | time since job start (4939s) is within the limit (349056.0s)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,219 | INFO     | job 6983328354 has state=finished
[2026-01-26 14:23:24] 2026-01-26 19:22:30,219 | INFO     | preparing for final server update for job 6983328354 in state='finished'
[2026-01-26 14:23:24] 2026-01-26 19:22:30,219 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-6983328354/jobReport.json
[2026-01-26 14:23:24] 2026-01-26 19:22:30,221 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-01-26 14:23:24] 2026-01-26 19:22:30,258 | INFO     | this job has now completed (state=finished)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,258 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,258 | INFO     | log transfer has been attempted: DONE
[2026-01-26 14:23:24] 2026-01-26 19:22:30,258 | INFO     | job 6983328354 has finished - writing final server update
[2026-01-26 14:23:24] 2026-01-26 19:22:30,259 | INFO     | total number of processed events: 400 (read)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,287 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6983328354/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,287 | INFO     | extracted standard info from prmon json
[2026-01-26 14:23:24] 2026-01-26 19:22:30,287 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 14:23:24] 2026-01-26 19:22:30,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 14:23:24] 2026-01-26 19:22:30,295 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 14:23:24] 2026-01-26 19:22:30,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 14:23:24] 2026-01-26 19:22:30,296 | INFO     | fitting pss+swap vs Time
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | sum of square deviations: 120607251.78082201
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | sum of deviations: 379821795.6986302
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | mean x: 1769453003.0547945
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | mean y: 2510778.5753424657
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | intersect: -5569930406.354087
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | chi2: 0.018280381746494826
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | current memory leak: 3.15 B/s (using 73 data points, chi2=0.02)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | could have reported an average CPU frequency of 3659 MHz (6 samples)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,297 | INFO     | ..............................
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . Timing measurements:
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . get job = 0 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . initial setup = 42 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . payload setup = 40 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . stage-in = 0 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . payload execution = 4878 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . stage-out = 0 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | . log creation = 0 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,298 | INFO     | ..............................
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | 
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | job summary report
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | --------------------------------------------------
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | PanDA job id: 6983328354
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | task id: 48318034
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | errors: (none)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | pilot state: finished 
[2026-01-26 14:23:24] 2026-01-26 19:22:30,816 | INFO     | transexitcode: 0
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | exeerrorcode: 0
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | exeerrordiag: 
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | exitcode: 0
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | exitmsg: OK
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | cpuconsumptiontime: 24490 s
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | nevents: 400
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | neventsw: 0
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | pid: 2939529
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | pgrp: 2939529
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | corecount: 8
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | event service: False
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | sizes: {0: 2283768, 1: 2284229, 12: 2284229, 4922: 2310466, 4923: 2319464, 4926: 2319548, 4928: 2319870}
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | --------------------------------------------------
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | 
[2026-01-26 14:23:24] 2026-01-26 19:22:30,817 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,937 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | job 6983328354 has completed (purged errors)
[2026-01-26 14:23:24] 2026-01-26 19:22:30,938 | INFO     | overall cleanup function is called
[2026-01-26 14:23:24] 2026-01-26 19:22:31,950 | INFO     | --- collectZombieJob: --- 10, [2939529]
[2026-01-26 14:23:24] 2026-01-26 19:22:31,954 | INFO     | zombie collector waiting for pid 2939529
[2026-01-26 14:23:24] 2026-01-26 19:22:31,954 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 14:23:24] 2026-01-26 19:22:31,954 | INFO     | collected zombie processes
[2026-01-26 14:23:24] 2026-01-26 19:22:31,954 | INFO     | will attempt to kill all subprocesses of pid=2939529
[2026-01-26 14:23:24] 2026-01-26 19:22:32,160 | INFO     | PID=2918628 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-26 14:23:24] 2026-01-26 19:22:32,161 | INFO     | .. there are 54 such processes running
[2026-01-26 14:23:24] 2026-01-26 19:22:32,614 | INFO     | process IDs to be killed: [2939529] (in reverse order)
[2026-01-26 14:23:24] 2026-01-26 19:22:32,839 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 14:23:24] 2026-01-26 19:22:32,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 14:23:24] 2026-01-26 19:22:32,869 | INFO     | did not find any defunct processes belonging to 2939529
[2026-01-26 14:23:24] 2026-01-26 19:22:32,905 | INFO     | did not find any defunct processes belonging to 2939529
[2026-01-26 14:23:24] 2026-01-26 19:22:32,906 | INFO     | ready for new job
[2026-01-26 14:23:24] 2026-01-26 19:22:32,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 14:23:24] 2026-01-26 19:22:32,907 | INFO     | **************************************
[2026-01-26 14:23:24] 2026-01-26 19:22:32,907 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 14:23:24] 2026-01-26 19:22:32,907 | INFO     | **************************************
[2026-01-26 14:23:24] 2026-01-26 19:22:32,907 | INFO     | 
[2026-01-26 14:23:24] 2026-01-26 19:22:32,911 | INFO     | architecture information:
[2026-01-26 14:23:24] 2026-01-26 19:22:32,919 | INFO     | executing command: cat /etc/os-release
[2026-01-26 14:23:24] 2026-01-26 19:22:32,933 | INFO     | cat /etc/os-release:
[2026-01-26 14:23:24] NAME="CentOS Linux"
[2026-01-26 14:23:24] VERSION="7 (Core)"
[2026-01-26 14:23:24] ID="centos"
[2026-01-26 14:23:24] ID_LIKE="rhel fedora"
[2026-01-26 14:23:24] VERSION_ID="7"
[2026-01-26 14:23:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 14:23:24] ANSI_COLOR="0;31"
[2026-01-26 14:23:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 14:23:24] HOME_URL="https://www.centos.org/"
[2026-01-26 14:23:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 14:23:24] 
[2026-01-26 14:23:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 14:23:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 14:23:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 14:23:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 14:23:24] 
[2026-01-26 14:23:24] 2026-01-26 19:22:32,933 | INFO     | **************************************
[2026-01-26 14:23:24] 2026-01-26 19:22:33,445 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-26 14:23:24] 2026-01-26 19:22:33,459 | INFO     | sufficient remaining disk space (88595234816 B)
[2026-01-26 14:23:24] 2026-01-26 19:22:33,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 14:23:24] 2026-01-26 19:22:33,460 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 14:23:24] 2026-01-26 19:22:33,460 | INFO     | update_server=False
[2026-01-26 14:23:24] 2026-01-26 19:22:33,460 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 14:23:24] 2026-01-26 19:22:33,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 14:23:24] 2026-01-26 19:22:33,461 | INFO     | aborting loop
[2026-01-26 14:23:24] 2026-01-26 19:22:33,480 | INFO     | all payload control threads have been joined
[2026-01-26 14:23:24] 2026-01-26 19:22:34,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 14:23:24] 2026-01-26 19:22:34,387 | INFO     | all data control threads have been joined
[2026-01-26 14:23:24] 2026-01-26 19:22:34,465 | INFO     | [job] retrieve thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:34,467 | INFO     | [job] job monitor thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:34,486 | INFO     | [payload] control thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:34,497 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:34,527 | INFO     | [data] copytool_in thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:34,841 | INFO     | all job control threads have been joined
[2026-01-26 14:23:24] 2026-01-26 19:22:34,876 | INFO     | [payload] failed_post thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:34,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 14:23:24] 2026-01-26 19:22:35,101 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:35,393 | INFO     | [data] control thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:35,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 14:23:24] 2026-01-26 19:22:35,710 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:35,809 | INFO     | [payload] validate_post thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:35,847 | INFO     | [job] control thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:35,948 | INFO     | [job] validate thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:36,079 | INFO     | [data] copytool_out thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:36,463 | INFO     | [job] queue monitor thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:38,906 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:22:43,762 | INFO     | job.realtimelogging is not enabled
[2026-01-26 14:23:24] 2026-01-26 19:22:44,768 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 14:23:24] 2026-01-26 19:23:05,476 | INFO     | PID=2918628 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 14:23:24] 2026-01-26 19:23:05,477 | INFO     | .. there are 54 such processes running
[2026-01-26 14:23:24] 2026-01-26 19:23:05,477 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 14:23:24] 2026-01-26 19:23:05,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 14:23:24] 2026-01-26 19:23:05,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 14:23:24] 2026-01-26 19:23:17,815 | INFO     | [monitor] cgroup control has ended
[2026-01-26 14:23:24] 2026-01-26 19:23:18,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140261372634944)>', '<ExcThread(monitor, started 140260881200896)>']
[2026-01-26 14:23:24] 2026-01-26 19:23:19,566 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 14:23:24] 2026-01-26 19:23:19,566 | INFO     | [monitor] control thread has ended
[2026-01-26 14:23:24] 2026-01-26 19:23:23,852 | INFO     | all workflow threads have been joined
[2026-01-26 14:23:24] 2026-01-26 19:23:23,852 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 14:23:24] 2026-01-26 19:23:23,852 | INFO     | traces error code: 0
[2026-01-26 14:23:24] 2026-01-26 19:23:23,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 14:23:24] 2026-01-26 19:23:24,060 [wrapper] ==== pilot stdout END ====
[2026-01-26 14:23:24] 2026-01-26 19:23:24,062 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 14:23:24] 2026-01-26 19:23:24,064 [wrapper] pilotpid: 2918628
[2026-01-26 14:23:24] 2026-01-26 19:23:24,069 [wrapper] Pilot exit status: 0
[2026-01-26 14:23:24] 2026-01-26 19:23:24,096 [wrapper] pandaids: 6983328354
[2026-01-26 14:23:24] 2026-01-26 19:23:24,233 [wrapper] cleanup supervisor_pilot 3760309 2918629
[2026-01-26 14:23:24] 2026-01-26 19:23:24,236 [wrapper] Test setup, not cleaning
[2026-01-26 14:23:24] 2026-01-26 19:23:24,238 [wrapper] apfmon messages muted
[2026-01-26 14:23:24] 2026-01-26 19:23:24,252 [wrapper] ==== wrapper stdout END ====
[2026-01-26 14:23:24] 2026-01-26 19:23:24,254 [wrapper] ==== wrapper stderr END ====
[2026-01-26 14:23:24]  *** Error codes and diagnostics ***
[2026-01-26 14:23:24]     "exeErrorCode": 0,
[2026-01-26 14:23:24]     "exeErrorDiag": "",
[2026-01-26 14:23:24]     "pilotErrorCode": 0,
[2026-01-26 14:23:24]     "pilotErrorDiag": "",
[2026-01-26 14:23:24]  *** Listing of results directory ***
[2026-01-26 14:23:24] total 682616
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 13:47 pilot3.tar.gz
[2026-01-26 14:23:24] -rwx------. 1 boincer umatlas     36322 Jan 25 13:49 runpilot2-wrapper.sh
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 13:51 queuedata.json
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas       100 Jan 26 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 14:23:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 12:58 run_atlas
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas       105 Jan 26 12:58 job.xml
[2026-01-26 14:23:24] -rw-r--r--. 2 boincer umatlas 502047576 Jan 26 12:58 EVNT.48318032._000027.pool.root.1
[2026-01-26 14:23:24] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 12:58 start_atlas.sh
[2026-01-26 14:23:24] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 12:58 shared
[2026-01-26 14:23:24] -rw-r--r--. 2 boincer umatlas    597767 Jan 26 12:58 input.tar.gz
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas         0 Jan 26 12:58 boinc_lockfile
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas      2533 Jan 26 12:58 pandaJob.out
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas        57 Jan 26 12:58 setup.sh.local
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas   1006384 Jan 26 12:59 agis_schedconf.cvmfs.json
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas   1516246 Jan 26 12:59 agis_ddmendpoints.agis.ALL.json
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas       430 Jan 26 13:00 workernode_map.json
[2026-01-26 14:23:24] drwx------. 5 boincer umatlas      4096 Jan 26 13:00 pilot3
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas      7171 Jan 26 14:20 init_data.xml
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas 190973979 Jan 26 14:21 HITS.48318034._001330.pool.root.1
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas       531 Jan 26 14:21 boinc_task_state.xml
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas      1034 Jan 26 14:22 memory_monitor_summary.json
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas    351509 Jan 26 14:22 log.48318034._001330.job.log.tgz.1
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas      6324 Jan 26 14:22 heartbeat.json
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas        95 Jan 26 14:23 pilot_heartbeat.json
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas        27 Jan 26 14:23 wrapper_checkpoint.txt
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 14:23 boinc_mmap_file
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas      4892 Jan 26 14:23 pilotlog.txt
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas    667511 Jan 26 14:23 log.48318034._001330.job.log.1
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas       357 Jan 26 14:23 output.list
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas       620 Jan 26 14:23 runtime_log
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas   1034240 Jan 26 14:23 result.tar.gz
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas       650 Jan 26 14:23 uxIODmFMK48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmx97KDm0Yiy0m.diag
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas      9331 Jan 26 14:23 runtime_log.err
[2026-01-26 14:23:24] -rw-r--r--. 1 boincer umatlas     22621 Jan 26 14:23 stderr.txt
[2026-01-26 14:23:24] HITS file was successfully produced:
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas 190973979 Jan 26 14:21 shared/HITS.pool.root.1
[2026-01-26 14:23:24]  *** Contents of shared directory: ***
[2026-01-26 14:23:24] total 678400
[2026-01-26 14:23:24] -rw-r--r--. 2 boincer umatlas 502047576 Jan 26 12:58 ATLAS.root_0
[2026-01-26 14:23:24] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 12:58 start_atlas.sh
[2026-01-26 14:23:24] -rw-r--r--. 2 boincer umatlas    597767 Jan 26 12:58 input.tar.gz
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas 190973979 Jan 26 14:21 HITS.pool.root.1
[2026-01-26 14:23:24] -rw-------. 1 boincer umatlas   1034240 Jan 26 14:23 result.tar.gz
14:23:26 (2907078): run_atlas exited; CPU time 24672.777183
14:23:26 (2907078): called boinc_finish(0)

</stderr_txt>
]]>

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