Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:15:51 (3980932): wrapper (7.7.26015): starting
12:15:51 (3980932): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 12:15:51] Arguments: --nthreads 3
[2026-01-27 12:15:51] Threads: 3
[2026-01-27 12:15:51] Checking for CVMFS
[2026-01-27 12:15:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:15:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:15:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:15:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:15:52] 2.9.2.0 2524488 9833 95648 155582 0 49 18240900 36864000 0 130560 0 4262017 99.986 316452 4750 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 12:15:52] CVMFS is ok
[2026-01-27 12:15:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:15:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 12:15:52] Further information can be found at the LHC@home message board.
[2026-01-27 12:15:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:15:52] Checking for apptainer binary...
[2026-01-27 12:15:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:15:52] Running /usr/bin/apptainer --version
[2026-01-27 12:15:52] apptainer version 1.4.1-1.1
[2026-01-27 12:15:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:15:52] thA371
[2026-01-27 12:15:52] apptainer works
[2026-01-27 12:15:52] Set ATHENA_PROC_NUMBER=3
[2026-01-27 12:15:52] Set ATHENA_CORE_NUMBER=3
[2026-01-27 12:15:52] Starting ATLAS job with PandaID=6983771561
[2026-01-27 12:15:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:41:31]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:41:31] 2026-01-27 12:40:59,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 13:41:31] 2026-01-27 12:40:59,401 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 13:41:31] 2026-01-27 12:40:59,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:41:31] 2026-01-27 12:40:59,401 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:41:31] 2026-01-27 12:40:59,401 | INFO     | job 6983771561 has completed (purged errors)
[2026-01-27 13:41:31] 2026-01-27 12:40:59,402 | INFO     | overall cleanup function is called
[2026-01-27 13:41:31] 2026-01-27 12:41:00,408 | INFO     | --- collectZombieJob: --- 10, [3989387]
[2026-01-27 13:41:31] 2026-01-27 12:41:00,409 | INFO     | zombie collector waiting for pid 3989387
[2026-01-27 13:41:31] 2026-01-27 12:41:00,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:41:31] 2026-01-27 12:41:00,409 | INFO     | collected zombie processes
[2026-01-27 13:41:31] 2026-01-27 12:41:00,409 | INFO     | will attempt to kill all subprocesses of pid=3989387
[2026-01-27 13:41:31] 2026-01-27 12:41:00,451 | INFO     | process IDs to be killed: [3989387] (in reverse order)
[2026-01-27 13:41:31] 2026-01-27 12:41:00,474 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:41:31] 2026-01-27 12:41:00,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:41:31] 2026-01-27 12:41:00,476 | INFO     | did not find any defunct processes belonging to 3989387
[2026-01-27 13:41:31] 2026-01-27 12:41:00,477 | INFO     | did not find any defunct processes belonging to 3989387
[2026-01-27 13:41:31] 2026-01-27 12:41:00,477 | INFO     | ready for new job
[2026-01-27 13:41:31] 2026-01-27 12:41:00,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:41:31] 2026-01-27 12:41:00,478 | INFO     | **************************************
[2026-01-27 13:41:31] 2026-01-27 12:41:00,478 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:41:31] 2026-01-27 12:41:00,478 | INFO     | **************************************
[2026-01-27 13:41:31] 2026-01-27 12:41:00,478 | INFO     | 
[2026-01-27 13:41:31] 2026-01-27 12:41:00,478 | INFO     | architecture information:
[2026-01-27 13:41:31] 2026-01-27 12:41:00,478 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:41:31] 2026-01-27 12:41:00,487 | INFO     | cat /etc/os-release:
[2026-01-27 13:41:31] NAME="CentOS Linux"
[2026-01-27 13:41:31] VERSION="7 (Core)"
[2026-01-27 13:41:31] ID="centos"
[2026-01-27 13:41:31] ID_LIKE="rhel fedora"
[2026-01-27 13:41:31] VERSION_ID="7"
[2026-01-27 13:41:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:41:31] ANSI_COLOR="0;31"
[2026-01-27 13:41:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:41:31] HOME_URL="https://www.centos.org/"
[2026-01-27 13:41:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:41:31] 
[2026-01-27 13:41:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:41:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:41:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:41:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:41:31] 
[2026-01-27 13:41:31] 2026-01-27 12:41:00,487 | INFO     | **************************************
[2026-01-27 13:41:31] 2026-01-27 12:41:00,990 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:41:31] 2026-01-27 12:41:01,003 | INFO     | sufficient remaining disk space (338748768256 B)
[2026-01-27 13:41:31] 2026-01-27 12:41:01,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:41:31] 2026-01-27 12:41:01,004 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:41:31] 2026-01-27 12:41:01,004 | INFO     | update_server=False
[2026-01-27 13:41:31] 2026-01-27 12:41:01,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:41:31] 2026-01-27 12:41:01,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:41:31] 2026-01-27 12:41:01,779 | INFO     | all payload control threads have been joined
[2026-01-27 13:41:31] 2026-01-27 12:41:01,829 | INFO     | all job control threads have been joined
[2026-01-27 13:41:31] 2026-01-27 12:41:02,000 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:41:31] 2026-01-27 12:41:02,001 | INFO     | aborting loop
[2026-01-27 13:41:31] 2026-01-27 12:41:02,009 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,010 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,035 | INFO     | all data control threads have been joined
[2026-01-27 13:41:31] 2026-01-27 12:41:02,039 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,088 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,159 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:41:31] 2026-01-27 12:41:02,462 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,780 | INFO     | [payload] control thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:02,833 | INFO     | [job] control thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:03,006 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:03,041 | INFO     | [data] control thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:03,271 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:03,331 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:03,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:41:31] 2026-01-27 12:41:03,389 | INFO     | [job] validate thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:03,432 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:04,330 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:07,361 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:41:31] 2026-01-27 12:41:07,719 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:41:31] 2026-01-27 12:41:08,586 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140527326750528)>', '<ExcThread(monitor, started 140526540015360)>']
[2026-01-27 13:41:31] 2026-01-27 12:41:13,612 | INFO     | all workflow threads have been joined
[2026-01-27 13:41:31] 2026-01-27 12:41:13,612 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:41:31] 2026-01-27 12:41:13,612 | INFO     | traces error code: 0
[2026-01-27 13:41:31] 2026-01-27 12:41:13,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:41:31] 2026-01-27 12:41:31,061 | INFO     | PID=3984968 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 13:41:31] 2026-01-27 12:41:31,062 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:41:31] 2026-01-27 12:41:31,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:41:31] 2026-01-27 12:41:31,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:41:31] 2026-01-27 12:41:31,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:41:31] 2026-01-27 12:41:31,062 | INFO     | [monitor] control thread has ended
[2026-01-27 13:41:31] 2026-01-27 12:41:31,108 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:41:31] 2026-01-27 12:41:31,110 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:41:31] 2026-01-27 12:41:31,113 [wrapper] pilotpid: 3984968
[2026-01-27 13:41:31] 2026-01-27 12:41:31,115 [wrapper] Pilot exit status: 0
[2026-01-27 13:41:31] 2026-01-27 12:41:31,122 [wrapper] pandaids: 6983771561
[2026-01-27 13:41:31] 2026-01-27 12:41:31,137 [wrapper] cleanup supervisor_pilot 3994491 3984969
[2026-01-27 13:41:31] 2026-01-27 12:41:31,140 [wrapper] Test setup, not cleaning
[2026-01-27 13:41:31] 2026-01-27 12:41:31,142 [wrapper] apfmon messages muted
[2026-01-27 13:41:31] 2026-01-27 12:41:31,144 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:41:31] 2026-01-27 12:41:31,147 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:41:31]  *** Error codes and diagnostics ***
[2026-01-27 13:41:31]     "exeErrorCode": 0,
[2026-01-27 13:41:31]     "exeErrorDiag": "",
[2026-01-27 13:41:31]     "pilotErrorCode": 0,
[2026-01-27 13:41:31]     "pilotErrorDiag": "",
[2026-01-27 13:41:31]  *** Listing of results directory ***
[2026-01-27 13:41:31] total 674856
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:12 queuedata.json
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 13:41:31] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:41:31] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:15 run_atlas
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:15 job.xml
[2026-01-27 13:41:31] -rw-r--r-- 2 boinc boinc 502416453 Jan 27 12:15 EVNT.48317889._000006.pool.root.1
[2026-01-27 13:41:31] -rw-r--r-- 2 boinc boinc    597752 Jan 27 12:15 input.tar.gz
[2026-01-27 13:41:31] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:15 start_atlas.sh
[2026-01-27 13:41:31] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:15 shared
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:15 boinc_setup_complete
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc      6439 Jan 27 12:15 init_data.xml
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:15 boinc_lockfile
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc      2515 Jan 27 12:15 pandaJob.out
[2026-01-27 13:41:31] -rw------- 1 boinc boinc   1002845 Jan 27 12:15 agis_schedconf.cvmfs.json
[2026-01-27 13:41:31] -rw------- 1 boinc boinc   1516246 Jan 27 12:15 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:41:31] -rw------- 1 boinc boinc       419 Jan 27 12:16 workernode_map.json
[2026-01-27 13:41:31] drwx------ 5 boinc boinc      4096 Jan 27 12:16 pilot3
[2026-01-27 13:41:31] -rw------- 1 boinc boinc 182719112 Jan 27 13:40 HITS.48317892._000517.pool.root.1
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc       530 Jan 27 13:40 boinc_task_state.xml
[2026-01-27 13:41:31] -rw------- 1 boinc boinc      1015 Jan 27 13:40 memory_monitor_summary.json
[2026-01-27 13:41:31] -rw------- 1 boinc boinc    251487 Jan 27 13:40 log.48317892._000517.job.log.tgz.1
[2026-01-27 13:41:31] -rw------- 1 boinc boinc      6291 Jan 27 13:40 heartbeat.json
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc        27 Jan 27 13:41 wrapper_checkpoint.txt
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc      8192 Jan 27 13:41 boinc_mmap_file
[2026-01-27 13:41:31] -rw------- 1 boinc boinc       747 Jan 27 13:41 pilotlog.txt
[2026-01-27 13:41:31] -rw------- 1 boinc boinc        95 Jan 27 13:41 pilot_heartbeat.json
[2026-01-27 13:41:31] -rw------- 1 boinc boinc    745073 Jan 27 13:41 log.48317892._000517.job.log.1
[2026-01-27 13:41:31] -rw------- 1 boinc boinc       357 Jan 27 13:41 output.list
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc       620 Jan 27 13:41 runtime_log
[2026-01-27 13:41:31] -rw------- 1 boinc boinc   1013760 Jan 27 13:41 result.tar.gz
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc      8896 Jan 27 13:41 runtime_log.err
[2026-01-27 13:41:31] -rw------- 1 boinc boinc       657 Jan 27 13:41 lfbNDmTKQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAi8KDmBvX9Km.diag
[2026-01-27 13:41:31] -rw-r--r-- 1 boinc boinc     11209 Jan 27 13:41 stderr.txt
[2026-01-27 13:41:31] HITS file was successfully produced:
[2026-01-27 13:41:31] -rw------- 1 boinc boinc 182719112 Jan 27 13:40 shared/HITS.pool.root.1
[2026-01-27 13:41:31]  *** Contents of shared directory: ***
[2026-01-27 13:41:31] total 670684
[2026-01-27 13:41:31] -rw-r--r-- 2 boinc boinc 502416453 Jan 27 12:15 ATLAS.root_0
[2026-01-27 13:41:31] -rw-r--r-- 2 boinc boinc    597752 Jan 27 12:15 input.tar.gz
[2026-01-27 13:41:31] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:15 start_atlas.sh
[2026-01-27 13:41:31] -rw------- 1 boinc boinc 182719112 Jan 27 13:40 HITS.pool.root.1
[2026-01-27 13:41:31] -rw------- 1 boinc boinc   1013760 Jan 27 13:41 result.tar.gz
13:41:33 (3980932): run_atlas exited; CPU time 14614.338850
13:41:33 (3980932): called boinc_finish(0)

</stderr_txt>
]]>

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