Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:56:26 (852274): wrapper (7.7.26015): starting
20:56:26 (852274): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 20:56:26] Arguments: --nthreads 4
[2026-01-27 20:56:26] Threads: 4
[2026-01-27 20:56:26] Checking for CVMFS
[2026-01-27 20:56:26] No cvmfs_config command found, will try listing directly
[2026-01-27 20:56:26] CVMFS is ok
[2026-01-27 20:56:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 20:56:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 20:56:26] Further information can be found at the LHC@home message board.
[2026-01-27 20:56:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 20:56:26] Checking for apptainer binary...
[2026-01-27 20:56:26] which: no apptainer in ((null))
[2026-01-27 20:56:26] apptainer is not installed, using version from CVMFS
[2026-01-27 20:56:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 20:56:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-01-27 20:56:26] apptainer works
[2026-01-27 20:56:26] Set ATHENA_PROC_NUMBER=4
[2026-01-27 20:56:26] Set ATHENA_CORE_NUMBER=4
[2026-01-27 20:56:26] Starting ATLAS job with PandaID=6983773736
[2026-01-27 20:56:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 00:12:48]  *** The last 200 lines of the pilot log: ***
[2026-01-28 00:12:48] 2026-01-27 23:00:13,481 | INFO     | time since job start (11008s) is within the limit (349056.0s)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,055 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,055 | INFO     | reading metadata from: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6983773736/jobReport.json
[2026-01-28 00:12:48] 2026-01-27 23:00:14,058 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot56/slots/0/workernode_map.json
[2026-01-28 00:12:48] 2026-01-27 23:00:14,058 | INFO     | this job has now completed (state=finished)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,058 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,058 | INFO     | log transfer has been attempted: DONE
[2026-01-28 00:12:48] 2026-01-27 23:00:14,058 | INFO     | job 6983773736 has finished - writing final server update
[2026-01-28 00:12:48] 2026-01-27 23:00:14,059 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2057748/.job.ad'
[2026-01-28 00:12:48] 2026-01-27 23:00:14,059 | INFO     | total number of processed events: 400 (read)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,071 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6983773736/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,071 | INFO     | extracted standard info from prmon json
[2026-01-28 00:12:48] 2026-01-27 23:00:14,072 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 00:12:48] 2026-01-27 23:00:14,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 00:12:48] 2026-01-27 23:00:14,072 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 00:12:48] 2026-01-27 23:00:14,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 00:12:48] 2026-01-27 23:00:14,076 | INFO     | fitting pss+swap vs Time
[2026-01-28 00:12:48] 2026-01-27 23:00:14,076 | INFO     | sum of square deviations: 1808350185.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,077 | INFO     | sum of deviations: -160389130.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,077 | INFO     | mean x: 1769549287.5
[2026-01-28 00:12:48] 2026-01-27 23:00:14,078 | INFO     | mean y: 2346886.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,078 | INFO     | intersect: 159294623.81564045
[2026-01-28 00:12:48] 2026-01-27 23:00:14,078 | INFO     | chi2: 1.4502136703791633
[2026-01-28 00:12:48] 2026-01-27 23:00:14,078 | INFO     | sum of square deviations: 1661798600.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,079 | INFO     | sum of deviations: -274300468.99999934
[2026-01-28 00:12:48] 2026-01-27 23:00:14,079 | INFO     | mean x: 1769549135.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,079 | INFO     | mean y: 2346767.4457142856
[2026-01-28 00:12:48] 2026-01-27 23:00:14,080 | INFO     | intersect: 294432798.5983721
[2026-01-28 00:12:48] 2026-01-27 23:00:14,080 | INFO     | chi2: 1.4498678659015547
[2026-01-28 00:12:48] 2026-01-27 23:00:14,080 | INFO     | current chi2=1.4498678659015547 (change=0.023845070879669555 %)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,080 | INFO     | right removable region: 174
[2026-01-28 00:12:48] 2026-01-27 23:00:14,080 | INFO     | sum of square deviations: 1661798600.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,081 | INFO     | sum of deviations: -19328096928.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,081 | INFO     | mean x: 1769549440.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,082 | INFO     | mean y: 2366457.5485714287
[2026-01-28 00:12:48] 2026-01-27 23:00:14,082 | INFO     | intersect: 20583695082.574566
[2026-01-28 00:12:48] 2026-01-27 23:00:14,082 | INFO     | chi2: 0.20087219048416177
[2026-01-28 00:12:48] 2026-01-27 23:00:14,082 | INFO     | current chi2=0.20087219048416177 (change=86.14878658317687 %)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,082 | INFO     | sum of square deviations: 1523386702.5
[2026-01-28 00:12:48] 2026-01-27 23:00:14,083 | INFO     | sum of deviations: -12031402344.0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,083 | INFO     | mean x: 1769549592.5
[2026-01-28 00:12:48] 2026-01-27 23:00:14,083 | INFO     | mean y: 2358393.470588235
[2026-01-28 00:12:48] 2026-01-27 23:00:14,084 | INFO     | intersect: 13977905823.476297
[2026-01-28 00:12:48] 2026-01-27 23:00:14,084 | INFO     | chi2: 0.15657212542806684
[2026-01-28 00:12:48] 2026-01-27 23:00:14,084 | INFO     | current chi2=0.15657212542806684 (change=22.053856708247462 %)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,084 | INFO     | left removable region: 20
[2026-01-28 00:12:48] 2026-01-27 23:00:14,084 | INFO     | sum of square deviations: 1132458442.5
[2026-01-28 00:12:48] 2026-01-27 23:00:14,085 | INFO     | sum of deviations: 1750399849.4999998
[2026-01-28 00:12:48] 2026-01-27 23:00:14,085 | INFO     | mean x: 1769549714.5
[2026-01-28 00:12:48] 2026-01-27 23:00:14,085 | INFO     | mean y: 2341298.1233766233
[2026-01-28 00:12:48] 2026-01-27 23:00:14,085 | INFO     | intersect: -2732787372.1223464
[2026-01-28 00:12:48] 2026-01-27 23:00:14,086 | INFO     | chi2: 0.000807574243366341
[2026-01-28 00:12:48] 2026-01-27 23:00:14,086 | INFO     | current memory leak: 1.55 B/s (using 154 data points, chi2=0.00)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,086 | INFO     | could have reported an average CPU frequency of 2643 MHz (10 samples)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | ..............................
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . Timing measurements:
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . get job = 0 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . initial setup = 6 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . payload setup = 6 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . stage-in = 0 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . payload execution = 10981 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . stage-out = 1 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | . log creation = 0 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,087 | INFO     | ..............................
[2026-01-28 00:12:48] 2026-01-27 23:00:14,233 | INFO     | 
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | job summary report
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | --------------------------------------------------
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | PanDA job id: 6983773736
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | task id: 48318034
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | errors: (none)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | pilot state: finished 
[2026-01-28 00:12:48] 2026-01-27 23:00:14,234 | INFO     | transexitcode: 0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | exeerrorcode: 0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | exeerrordiag: 
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | exitcode: 0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | exitmsg: OK
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | cpuconsumptiontime: 42341 s
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | nevents: 400
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | neventsw: 0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | pid: 861092
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | pgrp: 861092
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | corecount: 4
[2026-01-28 00:12:48] 2026-01-27 23:00:14,235 | INFO     | event service: False
[2026-01-28 00:12:48] 2026-01-27 23:00:14,236 | INFO     | sizes: {0: 2283778, 1: 2284239, 12: 2284239, 10991: 2313335, 10992: 2322355, 10993: 2322411, 10997: 2322733}
[2026-01-28 00:12:48] 2026-01-27 23:00:14,236 | INFO     | --------------------------------------------------
[2026-01-28 00:12:48] 2026-01-27 23:00:14,236 | INFO     | 
[2026-01-28 00:12:48] 2026-01-27 23:00:14,236 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2026-01-28 00:12:48] 2026-01-27 23:00:14,257 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,258 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,258 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,258 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,260 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,260 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 00:12:48] 2026-01-27 23:00:14,260 | INFO     | job 6983773736 has completed (purged errors)
[2026-01-28 00:12:48] 2026-01-27 23:00:14,260 | INFO     | overall cleanup function is called
[2026-01-28 00:12:48] 2026-01-27 23:00:15,268 | INFO     | --- collectZombieJob: --- 10, [861092]
[2026-01-28 00:12:48] 2026-01-27 23:00:15,269 | INFO     | zombie collector waiting for pid 861092
[2026-01-28 00:12:48] 2026-01-27 23:00:15,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 00:12:48] 2026-01-27 23:00:15,269 | INFO     | collected zombie processes
[2026-01-28 00:12:48] 2026-01-27 23:00:15,269 | INFO     | will attempt to kill all subprocesses of pid=861092
[2026-01-28 00:12:48] 2026-01-27 23:00:15,677 | INFO     | process IDs to be killed: [861092] (in reverse order)
[2026-01-28 00:12:48] 2026-01-27 23:00:15,785 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 00:12:48] 2026-01-27 23:00:15,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 00:12:48] 2026-01-27 23:00:15,798 | INFO     | did not find any defunct processes belonging to 861092
[2026-01-28 00:12:48] 2026-01-27 23:00:15,810 | INFO     | did not find any defunct processes belonging to 861092
[2026-01-28 00:12:48] 2026-01-27 23:00:15,810 | INFO     | ready for new job
[2026-01-28 00:12:48] 2026-01-27 23:00:15,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 00:12:48] 2026-01-27 23:00:15,813 | INFO     | **************************************
[2026-01-28 00:12:48] 2026-01-27 23:00:15,813 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 00:12:48] 2026-01-27 23:00:15,813 | INFO     | **************************************
[2026-01-28 00:12:48] 2026-01-27 23:00:15,813 | INFO     | 
[2026-01-28 00:12:48] 2026-01-27 23:00:15,817 | INFO     | architecture information:
[2026-01-28 00:12:48] 2026-01-27 23:00:15,817 | INFO     | executing command: cat /etc/os-release
[2026-01-28 00:12:48] 2026-01-27 23:00:15,835 | INFO     | cat /etc/os-release:
[2026-01-28 00:12:48] NAME="CentOS Linux"
[2026-01-28 00:12:48] VERSION="7 (Core)"
[2026-01-28 00:12:48] ID="centos"
[2026-01-28 00:12:48] ID_LIKE="rhel fedora"
[2026-01-28 00:12:48] VERSION_ID="7"
[2026-01-28 00:12:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 00:12:48] ANSI_COLOR="0;31"
[2026-01-28 00:12:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 00:12:48] HOME_URL="https://www.centos.org/"
[2026-01-28 00:12:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 00:12:48] 
[2026-01-28 00:12:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 00:12:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 00:12:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 00:12:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 00:12:48] 
[2026-01-28 00:12:48] 2026-01-27 23:00:15,835 | INFO     | **************************************
[2026-01-28 00:12:48] 2026-01-27 23:00:16,339 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2026-01-28 00:12:48] 2026-01-27 23:00:16,358 | INFO     | sufficient remaining disk space (661745827840 B)
[2026-01-28 00:12:48] 2026-01-27 23:00:16,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 00:12:48] 2026-01-27 23:00:16,359 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 00:12:48] 2026-01-27 23:00:16,359 | INFO     | update_server=False
[2026-01-28 00:12:48] 2026-01-27 23:00:16,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 00:12:48] 2026-01-27 23:00:16,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 00:12:48] 2026-01-27 23:00:16,359 | INFO     | aborting loop
[2026-01-28 00:12:48] 2026-01-27 23:00:16,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 00:12:48] 2026-01-27 23:00:16,790 | INFO     | all payload control threads have been joined
[2026-01-28 00:12:48] 2026-01-27 23:00:17,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 00:12:48] 2026-01-27 23:00:17,309 | INFO     | all data control threads have been joined
[2026-01-28 00:12:48] 2026-01-27 23:00:17,364 | INFO     | [job] retrieve thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:17,365 | INFO     | [job] job monitor thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:17,415 | INFO     | all job control threads have been joined
[2026-01-28 00:12:48] 2026-01-27 23:00:17,547 | INFO     | [payload] failed_post thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:17,581 | INFO     | [data] copytool_in thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:17,796 | INFO     | [payload] control thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:17,884 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:18,182 | INFO     | [job] validate thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:18,314 | INFO     | [data] control thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:18,421 | INFO     | [job] control thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:18,614 | INFO     | [payload] validate_post thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:18,685 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:18,698 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:19,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 00:12:48] 2026-01-27 23:00:19,216 | INFO     | [data] copytool_out thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:20,187 | INFO     | [job] queue monitor thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:20,361 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:26,757 | INFO     | job.realtimelogging is not enabled
[2026-01-28 00:12:48] 2026-01-27 23:00:27,762 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 00:12:48] 2026-01-27 23:00:47,101 | INFO     | PID=856294 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-28 00:12:48] 2026-01-27 23:00:47,101 | INFO     | .. there are 4 such processes running
[2026-01-28 00:12:48] 2026-01-27 23:00:47,101 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 00:12:48] 2026-01-27 23:00:47,101 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 00:12:48] 2026-01-27 23:00:47,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 00:12:48] 2026-01-27 23:01:01,495 | INFO     | [monitor] cgroup control has ended
[2026-01-28 00:12:48] 2026-01-27 23:01:02,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22702311999296)>', '<ExcThread(monitor, started 22702068074240)>']
[2026-01-28 00:12:48] 2026-01-27 23:01:03,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 00:12:48] 2026-01-27 23:01:03,177 | INFO     | [monitor] control thread has ended
[2026-01-28 00:12:48] 2026-01-27 23:01:07,815 | INFO     | all workflow threads have been joined
[2026-01-28 00:12:48] 2026-01-27 23:01:07,816 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 00:12:48] 2026-01-27 23:01:07,816 | INFO     | traces error code: 0
[2026-01-28 00:12:48] 2026-01-27 23:01:07,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 00:12:48] 2026-01-27 23:01:07,990 [wrapper] ==== pilot stdout END ====
[2026-01-28 00:12:48] 2026-01-27 23:01:07,993 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 00:12:48] 2026-01-27 23:01:07,996 [wrapper] pilotpid: 856294
[2026-01-28 00:12:48] 2026-01-27 23:01:07,999 [wrapper] Pilot exit status: 0
[2026-01-28 00:12:48] 2026-01-27 23:01:08,010 [wrapper] pandaids: 6983773736
[2026-01-28 00:12:48] 2026-01-27 23:01:08,087 [wrapper] cleanup supervisor_pilot  979585 856295
[2026-01-28 00:12:48] 2026-01-27 23:01:08,089 [wrapper] Test setup, not cleaning
[2026-01-28 00:12:48] 2026-01-27 23:01:08,091 [wrapper] apfmon messages muted
[2026-01-28 00:12:48] 2026-01-27 23:01:08,094 [wrapper] ==== wrapper stdout END ====
[2026-01-28 00:12:48] 2026-01-27 23:01:08,097 [wrapper] ==== wrapper stderr END ====
[2026-01-28 00:12:48]  *** Error codes and diagnostics ***
[2026-01-28 00:12:48]     "exeErrorCode": 0,
[2026-01-28 00:12:48]     "exeErrorDiag": "",
[2026-01-28 00:12:48]     "pilotErrorCode": 0,
[2026-01-28 00:12:48]     "pilotErrorDiag": "",
[2026-01-28 00:12:48]  *** Listing of results directory ***
[2026-01-28 00:12:48] total 671172
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-28 00:12:48] -rwx------ 1 boinc boinc     36322 Jan 26 06:15 runpilot2-wrapper.sh
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:15 queuedata.json
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc       100 Jan 27 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 00:12:48] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 20:56 run_atlas
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc       105 Jan 27 20:56 job.xml
[2026-01-28 00:12:48] -rw-r--r-- 2 boinc boinc 496596118 Jan 27 20:56 EVNT.48318032._000036.pool.root.1
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc      6639 Jan 27 20:56 init_data.xml
[2026-01-28 00:12:48] -rw-r--r-- 2 boinc boinc     15845 Jan 27 20:56 start_atlas.sh
[2026-01-28 00:12:48] drwxrwx--x 2 boinc boinc      4096 Jan 27 20:56 shared
[2026-01-28 00:12:48] -rw-r--r-- 2 boinc boinc    597767 Jan 27 20:56 input.tar.gz
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc         0 Jan 27 20:56 boinc_lockfile
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc      2533 Jan 27 20:56 pandaJob.out
[2026-01-28 00:12:48] -rw------- 1 boinc boinc   1005244 Jan 27 20:56 agis_schedconf.cvmfs.json
[2026-01-28 00:12:48] -rw------- 1 boinc boinc       451 Jan 27 20:56 workernode_map.json
[2026-01-28 00:12:48] drwx------ 5 boinc boinc      4096 Jan 27 20:56 pilot3
[2026-01-28 00:12:48] -rw------- 1 boinc boinc 182886625 Jan 27 23:59 HITS.48318034._002864.pool.root.1
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc       529 Jan 27 23:59 boinc_task_state.xml
[2026-01-28 00:12:48] -rw------- 1 boinc boinc        95 Jan 27 23:59 pilot_heartbeat.json
[2026-01-28 00:12:48] -rw------- 1 boinc boinc      1035 Jan 28 00:00 memory_monitor_summary.json
[2026-01-28 00:12:48] -rw------- 1 boinc boinc   1516246 Jan 28 00:00 agis_ddmendpoints.agis.ALL.json
[2026-01-28 00:12:48] -rw------- 1 boinc boinc    362889 Jan 28 00:00 log.48318034._002864.job.log.tgz.1
[2026-01-28 00:12:48] -rw------- 1 boinc boinc      6400 Jan 28 00:00 heartbeat.json
[2026-01-28 00:12:48] -rw------- 1 boinc boinc      4900 Jan 28 00:01 pilotlog.txt
[2026-01-28 00:12:48] -rw------- 1 boinc boinc   1561011 Jan 28 00:01 log.48318034._002864.job.log.1
[2026-01-28 00:12:48] -rw------- 1 boinc boinc       357 Jan 28 00:01 output.list
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc       620 Jan 28 00:01 runtime_log
[2026-01-28 00:12:48] -rw------- 1 boinc boinc   1945600 Jan 28 00:01 result.tar.gz
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc      9205 Jan 28 00:01 runtime_log.err
[2026-01-28 00:12:48] -rw------- 1 boinc boinc       665 Jan 28 00:01 29pLDmU7T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrZ2KDmWpNwHo.diag
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc        26 Jan 28 00:12 wrapper_checkpoint.txt
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc      8192 Jan 28 00:12 boinc_mmap_file
[2026-01-28 00:12:48] -rw-r--r-- 1 boinc boinc     21106 Jan 28 00:12 stderr.txt
[2026-01-28 00:12:48] HITS file was successfully produced:
[2026-01-28 00:12:48] -rw------- 1 boinc boinc 182886625 Jan 27 23:59 shared/HITS.pool.root.1
[2026-01-28 00:12:48]  *** Contents of shared directory: ***
[2026-01-28 00:12:48] total 666072
[2026-01-28 00:12:48] -rw-r--r-- 2 boinc boinc 496596118 Jan 27 20:56 ATLAS.root_0
[2026-01-28 00:12:48] -rw-r--r-- 2 boinc boinc     15845 Jan 27 20:56 start_atlas.sh
[2026-01-28 00:12:48] -rw-r--r-- 2 boinc boinc    597767 Jan 27 20:56 input.tar.gz
[2026-01-28 00:12:48] -rw------- 1 boinc boinc 182886625 Jan 27 23:59 HITS.pool.root.1
[2026-01-28 00:12:48] -rw------- 1 boinc boinc   1945600 Jan 28 00:01 result.tar.gz
00:12:49 (852274): run_atlas exited; CPU time 42867.185399
00:12:49 (852274): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN