Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:45:19 (371637): wrapper (7.7.26015): starting
07:45:19 (371637): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 07:45:19] Arguments: --nthreads 4
[2026-01-27 07:45:19] Threads: 4
[2026-01-27 07:45:19] Checking for CVMFS
[2026-01-27 07:45:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 07:45:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 07:45:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 07:45:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 07:45:19] 2.9.2.0 2800210 9352 100024 155575 2 50 34529897 36864000 0 130560 0 4820060 99.988 298576 6972 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 07:45:19] CVMFS is ok
[2026-01-27 07:45:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 07:45:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 07:45:19] Further information can be found at the LHC@home message board.
[2026-01-27 07:45:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 07:45:19] Checking for apptainer binary...
[2026-01-27 07:45:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 07:45:19] Running /usr/bin/apptainer --version
[2026-01-27 07:45:19] apptainer version 1.4.1-1.1
[2026-01-27 07:45:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 07:45:19] thA319
[2026-01-27 07:45:19] apptainer works
[2026-01-27 07:45:19] Set ATHENA_PROC_NUMBER=4
[2026-01-27 07:45:19] Set ATHENA_CORE_NUMBER=4
[2026-01-27 07:45:19] Starting ATLAS job with PandaID=6983450162
[2026-01-27 07:45:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 09:11:43]  *** The last 200 lines of the pilot log: ***
[2026-01-27 09:11:43] 2026-01-27 08:10:45,698 | INFO     | --- collectZombieJob: --- 10, [380254]
[2026-01-27 09:11:43] 2026-01-27 08:10:45,698 | INFO     | zombie collector waiting for pid 380254
[2026-01-27 09:11:43] 2026-01-27 08:10:45,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 09:11:43] 2026-01-27 08:10:45,698 | INFO     | collected zombie processes
[2026-01-27 09:11:43] 2026-01-27 08:10:45,698 | INFO     | will attempt to kill all subprocesses of pid=380254
[2026-01-27 09:11:43] 2026-01-27 08:10:45,747 | INFO     | process IDs to be killed: [380254] (in reverse order)
[2026-01-27 09:11:43] 2026-01-27 08:10:45,780 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 09:11:43] 2026-01-27 08:10:45,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 09:11:43] 2026-01-27 08:10:45,782 | INFO     | did not find any defunct processes belonging to 380254
[2026-01-27 09:11:43] 2026-01-27 08:10:45,784 | INFO     | did not find any defunct processes belonging to 380254
[2026-01-27 09:11:43] 2026-01-27 08:10:45,784 | INFO     | ready for new job
[2026-01-27 09:11:43] 2026-01-27 08:10:45,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 09:11:43] 2026-01-27 08:10:45,785 | INFO     | **************************************
[2026-01-27 09:11:43] 2026-01-27 08:10:45,785 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 09:11:43] 2026-01-27 08:10:45,785 | INFO     | **************************************
[2026-01-27 09:11:43] 2026-01-27 08:10:45,785 | INFO     | 
[2026-01-27 09:11:43] 2026-01-27 08:10:45,785 | INFO     | architecture information:
[2026-01-27 09:11:43] 2026-01-27 08:10:45,785 | INFO     | executing command: cat /etc/os-release
[2026-01-27 09:11:43] 2026-01-27 08:10:45,798 | INFO     | cat /etc/os-release:
[2026-01-27 09:11:43] NAME="CentOS Linux"
[2026-01-27 09:11:43] VERSION="7 (Core)"
[2026-01-27 09:11:43] ID="centos"
[2026-01-27 09:11:43] ID_LIKE="rhel fedora"
[2026-01-27 09:11:43] VERSION_ID="7"
[2026-01-27 09:11:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 09:11:43] ANSI_COLOR="0;31"
[2026-01-27 09:11:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 09:11:43] HOME_URL="https://www.centos.org/"
[2026-01-27 09:11:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 09:11:43] 
[2026-01-27 09:11:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 09:11:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 09:11:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 09:11:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 09:11:43] 
[2026-01-27 09:11:43] 2026-01-27 08:10:45,798 | INFO     | **************************************
[2026-01-27 09:11:43] 2026-01-27 08:10:46,302 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | INFO     | sufficient remaining disk space (318713626624 B)
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | INFO     | update_server=False
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | INFO     | aborting loop
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:11:43] 2026-01-27 08:10:46,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 09:11:43] 2026-01-27 08:10:46,693 | INFO     | all data control threads have been joined
[2026-01-27 09:11:43] 2026-01-27 08:10:47,180 | INFO     | all payload control threads have been joined
[2026-01-27 09:11:43] 2026-01-27 08:10:47,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 09:11:43] 2026-01-27 08:10:47,325 | INFO     | [job] retrieve thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,325 | INFO     | [job] job monitor thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,325 | INFO     | [job] queue monitor thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,699 | INFO     | [data] control thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,720 | INFO     | [job] validate thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,854 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,890 | INFO     | [payload] failed_post thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:47,890 | INFO     | job.realtimelogging is not enabled
[2026-01-27 09:11:43] 2026-01-27 08:10:47,902 | INFO     | all job control threads have been joined
[2026-01-27 09:11:43] 2026-01-27 08:10:47,953 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:48,015 | INFO     | [data] copytool_in thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:48,186 | INFO     | [payload] control thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:48,323 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:48,760 | INFO     | [payload] validate_post thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:48,896 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:48,907 | INFO     | [job] control thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:49,234 | INFO     | [data] copytool_out thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:10:50,327 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 09:11:43] 2026-01-27 08:11:16,076 | INFO     | PID=375747 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 09:11:43] 2026-01-27 08:11:16,077 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 09:11:43] 2026-01-27 08:11:16,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 09:11:43] 2026-01-27 08:11:16,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 09:11:43] 2026-01-27 08:11:37,724 | INFO     | [monitor] cgroup control has ended
[2026-01-27 09:11:43] 2026-01-27 08:11:37,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140478464714560)>', '<ExcThread(monitor, started 140477667976960)>']
[2026-01-27 09:11:43] 2026-01-27 08:11:38,195 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 09:11:43] 2026-01-27 08:11:38,195 | INFO     | [monitor] control thread has ended
[2026-01-27 09:11:43] 2026-01-27 08:11:42,974 | INFO     | all workflow threads have been joined
[2026-01-27 09:11:43] 2026-01-27 08:11:42,974 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 09:11:43] 2026-01-27 08:11:42,974 | INFO     | traces error code: 0
[2026-01-27 09:11:43] 2026-01-27 08:11:42,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 09:11:43] 2026-01-27 08:11:43,043 [wrapper] ==== pilot stdout END ====
[2026-01-27 09:11:43] 2026-01-27 08:11:43,046 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 09:11:43] 2026-01-27 08:11:43,050 [wrapper] pilotpid: 375747
[2026-01-27 09:11:43] 2026-01-27 08:11:43,054 [wrapper] Pilot exit status: 0
[2026-01-27 09:11:43] 2026-01-27 08:11:43,065 [wrapper] pandaids: 6983450162
[2026-01-27 09:11:43] 2026-01-27 08:11:43,089 [wrapper] cleanup supervisor_pilot  386196 375748
[2026-01-27 09:11:43] 2026-01-27 08:11:43,093 [wrapper] Test setup, not cleaning
[2026-01-27 09:11:43] 2026-01-27 08:11:43,097 [wrapper] apfmon messages muted
[2026-01-27 09:11:43] 2026-01-27 08:11:43,100 [wrapper] ==== wrapper stdout END ====
[2026-01-27 09:11:43] 2026-01-27 08:11:43,104 [wrapper] ==== wrapper stderr END ====
[2026-01-27 09:11:43]  *** Error codes and diagnostics ***
[2026-01-27 09:11:43]     "exeErrorCode": 0,
[2026-01-27 09:11:43]     "exeErrorDiag": "",
[2026-01-27 09:11:43]     "pilotErrorCode": 0,
[2026-01-27 09:11:43]     "pilotErrorDiag": "",
[2026-01-27 09:11:43]  *** Listing of results directory ***
[2026-01-27 09:11:43] total 450304
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-27 09:11:43] -rwx------ 1 boinc boinc     36322 Jan 25 21:49 runpilot2-wrapper.sh
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc      5111 Jan 25 21:51 queuedata.json
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc       100 Jan 27 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 09:11:43] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 07:45 run_atlas
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc       105 Jan 27 07:45 job.xml
[2026-01-27 09:11:43] -rw-r--r-- 2 boinc boinc 269153129 Jan 27 07:45 EVNT.48329419._000005.pool.root.1
[2026-01-27 09:11:43] -rw-r--r-- 2 boinc boinc    597775 Jan 27 07:45 input.tar.gz
[2026-01-27 09:11:43] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:45 start_atlas.sh
[2026-01-27 09:11:43] drwxrwx--x 2 boinc boinc      4096 Jan 27 07:45 shared
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:45 boinc_setup_complete
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc      6369 Jan 27 07:45 init_data.xml
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:45 boinc_lockfile
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc      2608 Jan 27 07:45 pandaJob.out
[2026-01-27 09:11:43] -rw------- 1 boinc boinc   1004335 Jan 27 07:45 agis_schedconf.cvmfs.json
[2026-01-27 09:11:43] -rw------- 1 boinc boinc   1516246 Jan 27 07:45 agis_ddmendpoints.agis.ALL.json
[2026-01-27 09:11:43] -rw------- 1 boinc boinc       427 Jan 27 07:45 workernode_map.json
[2026-01-27 09:11:43] drwx------ 5 boinc boinc      4096 Jan 27 07:45 pilot3
[2026-01-27 09:11:43] -rw------- 1 boinc boinc 186015456 Jan 27 09:10 HITS.48329421._000105.pool.root.1
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc       529 Jan 27 09:10 boinc_task_state.xml
[2026-01-27 09:11:43] -rw------- 1 boinc boinc      1035 Jan 27 09:10 memory_monitor_summary.json
[2026-01-27 09:11:43] -rw------- 1 boinc boinc    262349 Jan 27 09:10 log.48329421._000105.job.log.tgz.1
[2026-01-27 09:11:43] -rw------- 1 boinc boinc      6304 Jan 27 09:10 heartbeat.json
[2026-01-27 09:11:43] -rw------- 1 boinc boinc        95 Jan 27 09:11 pilot_heartbeat.json
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc        27 Jan 27 09:11 wrapper_checkpoint.txt
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc      8192 Jan 27 09:11 boinc_mmap_file
[2026-01-27 09:11:43] -rw------- 1 boinc boinc      4819 Jan 27 09:11 pilotlog.txt
[2026-01-27 09:11:43] -rw------- 1 boinc boinc    745484 Jan 27 09:11 log.48329421._000105.job.log.1
[2026-01-27 09:11:43] -rw------- 1 boinc boinc       357 Jan 27 09:11 output.list
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc       620 Jan 27 09:11 runtime_log
[2026-01-27 09:11:43] -rw------- 1 boinc boinc   1024000 Jan 27 09:11 result.tar.gz
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc      8896 Jan 27 09:11 runtime_log.err
[2026-01-27 09:11:43] -rw------- 1 boinc boinc       657 Jan 27 09:11 0pUKDmLEM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHo1KDmuzQekn.diag
[2026-01-27 09:11:43] -rw-r--r-- 1 boinc boinc     10695 Jan 27 09:11 stderr.txt
[2026-01-27 09:11:43] HITS file was successfully produced:
[2026-01-27 09:11:43] -rw------- 1 boinc boinc 186015456 Jan 27 09:10 shared/HITS.pool.root.1
[2026-01-27 09:11:43]  *** Contents of shared directory: ***
[2026-01-27 09:11:43] total 446108
[2026-01-27 09:11:43] -rw-r--r-- 2 boinc boinc 269153129 Jan 27 07:45 ATLAS.root_0
[2026-01-27 09:11:43] -rw-r--r-- 2 boinc boinc    597775 Jan 27 07:45 input.tar.gz
[2026-01-27 09:11:43] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:45 start_atlas.sh
[2026-01-27 09:11:43] -rw------- 1 boinc boinc 186015456 Jan 27 09:10 HITS.pool.root.1
[2026-01-27 09:11:43] -rw------- 1 boinc boinc   1024000 Jan 27 09:11 result.tar.gz
09:12:05 (371637): run_atlas exited; CPU time 19443.158439
09:12:05 (371637): called boinc_finish(0)

</stderr_txt>
]]>

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