Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:49:21 (1301540): wrapper (7.7.26015): starting
12:49:21 (1301540): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 12:49:21] Arguments: --nthreads 8
[2026-01-26 12:49:21] Threads: 8
[2026-01-26 12:49:21] Checking for CVMFS
[2026-01-26 12:49:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 12:49:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 12:49:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 12:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 12:49:22] 2.13.3.0 9597 47459 188496 155555 0 736 39426501 40960000 32989 16776704 0 321759697 99.716 239436632 46364 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 12:49:22] CVMFS is ok
[2026-01-26 12:49:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 12:49:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 12:49:22] Further information can be found at the LHC@home message board.
[2026-01-26 12:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:49:22] Checking for apptainer binary...
[2026-01-26 12:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 12:49:22] Running /usr/bin/apptainer --version
[2026-01-26 12:49:22] apptainer version 1.4.5-2.el9
[2026-01-26 12:49:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:49:23] c-208-38.aglt2.org
[2026-01-26 12:49:23] apptainer works
[2026-01-26 12:49:23] Set ATHENA_PROC_NUMBER=8
[2026-01-26 12:49:23] Set ATHENA_CORE_NUMBER=8
[2026-01-26 12:49:23] Starting ATLAS job with PandaID=6984042496
[2026-01-26 12:49:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 16:08:33]  *** The last 200 lines of the pilot log: ***
[2026-01-26 16:08:33] 2026-01-26 21:07:55,780 | INFO     | job 6984042496 has state=finished
[2026-01-26 16:08:33] 2026-01-26 21:07:55,781 | INFO     | preparing for final server update for job 6984042496 in state='finished'
[2026-01-26 16:08:33] 2026-01-26 21:07:55,781 | INFO     | reading metadata from: /tmp/boinchome/slots/5/PanDA_Pilot-6984042496/jobReport.json
[2026-01-26 16:08:33] 2026-01-26 21:07:55,782 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/5/workernode_map.json
[2026-01-26 16:08:33] 2026-01-26 21:07:55,782 | INFO     | this job has now completed (state=finished)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,782 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,783 | INFO     | log transfer has been attempted: DONE
[2026-01-26 16:08:33] 2026-01-26 21:07:55,783 | INFO     | job 6984042496 has finished - writing final server update
[2026-01-26 16:08:33] 2026-01-26 21:07:55,783 | INFO     | total number of processed events: 400 (read)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,804 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6984042496/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,804 | INFO     | extracted standard info from prmon json
[2026-01-26 16:08:33] 2026-01-26 21:07:55,806 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 16:08:33] 2026-01-26 21:07:55,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 16:08:33] 2026-01-26 21:07:55,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 16:08:33] 2026-01-26 21:07:55,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 16:08:33] 2026-01-26 21:07:55,808 | INFO     | fitting pss+swap vs Time
[2026-01-26 16:08:33] 2026-01-26 21:07:55,808 | INFO     | sum of square deviations: 2263993256.453608
[2026-01-26 16:08:33] 2026-01-26 21:07:55,809 | INFO     | sum of deviations: 56155828060.36083
[2026-01-26 16:08:33] 2026-01-26 21:07:55,809 | INFO     | mean x: 1769455715.5154638
[2026-01-26 16:08:33] 2026-01-26 21:07:55,809 | INFO     | mean y: 2441093.5463917525
[2026-01-26 16:08:33] 2026-01-26 21:07:55,809 | INFO     | intersect: -43886934741.6794
[2026-01-26 16:08:33] 2026-01-26 21:07:55,809 | INFO     | chi2: 3.6353570703757905
[2026-01-26 16:08:33] 2026-01-26 21:07:55,809 | INFO     | sum of square deviations: 2093414228.9523907
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | sum of deviations: 66475035711.4762
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | mean x: 1769455563.015873
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | mean y: 2450090.1746031744
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | intersect: -56185484487.977844
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | chi2: 2.953772275772964
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | current chi2=2.953772275772964 (change=18.74877161742933 %)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,810 | INFO     | right removable region: 188
[2026-01-26 16:08:33] 2026-01-26 21:07:55,811 | INFO     | sum of square deviations: 2093412398.9523907
[2026-01-26 16:08:33] 2026-01-26 21:07:55,811 | INFO     | sum of deviations: 5965837717.634914
[2026-01-26 16:08:33] 2026-01-26 21:07:55,811 | INFO     | mean x: 1769455868.015873
[2026-01-26 16:08:33] 2026-01-26 21:07:55,811 | INFO     | mean y: 2485784.7883597882
[2026-01-26 16:08:33] 2026-01-26 21:07:55,811 | INFO     | intersect: -5040135803.954603
[2026-01-26 16:08:33] 2026-01-26 21:07:55,812 | INFO     | chi2: 0.9209798577147013
[2026-01-26 16:08:33] 2026-01-26 21:07:55,812 | INFO     | current chi2=0.9209798577147013 (change=74.66604133003368 %)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,812 | INFO     | sum of square deviations: 1931622403.9510882
[2026-01-26 16:08:33] 2026-01-26 21:07:55,812 | INFO     | sum of deviations: -6932288576.940218
[2026-01-26 16:08:33] 2026-01-26 21:07:55,812 | INFO     | mean x: 1769456020.5163043
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | mean y: 2497880.1467391304
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | intersect: 6352796848.171069
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | chi2: 0.7445725625145139
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | current chi2=0.7445725625145139 (change=19.154305463088033 %)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | left removable region: 20
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | sum of square deviations: 1470262323.9464278
[2026-01-26 16:08:33] 2026-01-26 21:07:55,813 | INFO     | sum of deviations: 3894432028.696429
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | mean x: 1769456142.517857
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | mean y: 2509225.2678571427
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | intersect: -4684427631.209915
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | chi2: 0.008787351764809496
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | current memory leak: 2.65 B/s (using 168 data points, chi2=0.01)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | could have reported an average CPU frequency of 3799 MHz (10 samples)
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | ..............................
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . Timing measurements:
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . get job = 0 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . initial setup = 11 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . payload setup = 11 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . stage-in = 0 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . payload execution = 11843 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . stage-out = 4 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,814 | INFO     | . log creation = 1 s
[2026-01-26 16:08:33] 2026-01-26 21:07:55,815 | INFO     | ..............................
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | 
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | job summary report
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | --------------------------------------------------
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | PanDA job id: 6984042496
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | task id: 47929392
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | errors: (none)
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | pilot state: finished 
[2026-01-26 16:08:33] 2026-01-26 21:07:56,003 | INFO     | transexitcode: 0
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | exeerrorcode: 0
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | exeerrordiag: 
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | exitcode: 0
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | exitmsg: OK
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | cpuconsumptiontime: 22971 s
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | nevents: 400
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | neventsw: 0
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | pid: 1313840
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | pgrp: 1313840
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | corecount: 8
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | event service: False
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | sizes: {0: 2284280, 11: 2284280, 11859: 2313653, 11865: 2322651, 11868: 2322901}
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | --------------------------------------------------
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | 
[2026-01-26 16:08:33] 2026-01-26 21:07:56,004 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,134 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | job 6984042496 has completed (purged errors)
[2026-01-26 16:08:33] 2026-01-26 21:07:56,135 | INFO     | overall cleanup function is called
[2026-01-26 16:08:33] 2026-01-26 21:07:57,203 | INFO     | --- collectZombieJob: --- 10, [1313840]
[2026-01-26 16:08:33] 2026-01-26 21:07:57,203 | INFO     | zombie collector waiting for pid 1313840
[2026-01-26 16:08:33] 2026-01-26 21:07:57,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 16:08:33] 2026-01-26 21:07:57,203 | INFO     | collected zombie processes
[2026-01-26 16:08:33] 2026-01-26 21:07:57,203 | INFO     | will attempt to kill all subprocesses of pid=1313840
[2026-01-26 16:08:33] 2026-01-26 21:07:57,658 | INFO     | PID=1307017 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 16:08:33] 2026-01-26 21:07:57,658 | INFO     | .. there are 34 such processes running
[2026-01-26 16:08:33] 2026-01-26 21:07:59,442 | INFO     | process IDs to be killed: [1313840] (in reverse order)
[2026-01-26 16:08:33] 2026-01-26 21:08:00,093 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 16:08:33] 2026-01-26 21:08:00,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 16:08:33] 2026-01-26 21:08:00,187 | INFO     | did not find any defunct processes belonging to 1313840
[2026-01-26 16:08:33] 2026-01-26 21:08:00,345 | INFO     | did not find any defunct processes belonging to 1313840
[2026-01-26 16:08:33] 2026-01-26 21:08:00,345 | INFO     | ready for new job
[2026-01-26 16:08:33] 2026-01-26 21:08:00,345 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 16:08:33] 2026-01-26 21:08:00,405 | INFO     | **************************************
[2026-01-26 16:08:33] 2026-01-26 21:08:00,405 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 16:08:33] 2026-01-26 21:08:00,405 | INFO     | **************************************
[2026-01-26 16:08:33] 2026-01-26 21:08:00,405 | INFO     | 
[2026-01-26 16:08:33] 2026-01-26 21:08:00,431 | INFO     | architecture information:
[2026-01-26 16:08:33] 2026-01-26 21:08:00,452 | INFO     | executing command: cat /etc/os-release
[2026-01-26 16:08:33] 2026-01-26 21:08:00,555 | INFO     | cat /etc/os-release:
[2026-01-26 16:08:33] NAME="CentOS Linux"
[2026-01-26 16:08:33] VERSION="7 (Core)"
[2026-01-26 16:08:33] ID="centos"
[2026-01-26 16:08:33] ID_LIKE="rhel fedora"
[2026-01-26 16:08:33] VERSION_ID="7"
[2026-01-26 16:08:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 16:08:33] ANSI_COLOR="0;31"
[2026-01-26 16:08:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 16:08:33] HOME_URL="https://www.centos.org/"
[2026-01-26 16:08:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 16:08:33] 
[2026-01-26 16:08:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 16:08:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 16:08:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 16:08:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 16:08:33] 
[2026-01-26 16:08:33] 2026-01-26 21:08:00,556 | INFO     | **************************************
[2026-01-26 16:08:33] 2026-01-26 21:08:01,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-26 16:08:33] 2026-01-26 21:08:01,114 | INFO     | sufficient remaining disk space (169084977152 B)
[2026-01-26 16:08:33] 2026-01-26 21:08:01,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 16:08:33] 2026-01-26 21:08:01,114 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 16:08:33] 2026-01-26 21:08:01,114 | INFO     | update_server=False
[2026-01-26 16:08:33] 2026-01-26 21:08:01,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 16:08:33] 2026-01-26 21:08:01,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 16:08:33] 2026-01-26 21:08:01,116 | INFO     | all data control threads have been joined
[2026-01-26 16:08:33] 2026-01-26 21:08:01,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:08:33] 2026-01-26 21:08:01,131 | INFO     | all job control threads have been joined
[2026-01-26 16:08:33] 2026-01-26 21:08:01,596 | INFO     | all payload control threads have been joined
[2026-01-26 16:08:33] 2026-01-26 21:08:01,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 16:08:33] 2026-01-26 21:08:02,095 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:08:33] 2026-01-26 21:08:02,095 | INFO     | aborting loop
[2026-01-26 16:08:33] 2026-01-26 21:08:02,121 | INFO     | [job] retrieve thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,122 | INFO     | [data] control thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,124 | INFO     | [job] queue monitor thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,137 | INFO     | [job] control thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,227 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,602 | INFO     | [payload] control thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,667 | INFO     | [payload] validate_post thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,729 | INFO     | [payload] failed_post thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:02,899 | INFO     | [job] validate thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:03,101 | INFO     | [job] job monitor thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:03,123 | INFO     | [data] copytool_out thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:03,350 | INFO     | [data] copytool_in thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:03,354 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:03,354 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:03,436 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:05,837 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 16:08:33] 2026-01-26 21:08:16,580 | INFO     | [monitor] cgroup control has ended
[2026-01-26 16:08:33] 2026-01-26 21:08:16,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668658001728)>', '<ExcThread(monitor, started 139668284753664)>']
[2026-01-26 16:08:33] 2026-01-26 21:08:21,851 | INFO     | all workflow threads have been joined
[2026-01-26 16:08:33] 2026-01-26 21:08:21,851 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 16:08:33] 2026-01-26 21:08:21,851 | INFO     | traces error code: 0
[2026-01-26 16:08:33] 2026-01-26 21:08:21,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 16:08:33] 2026-01-26 21:08:30,872 | INFO     | PID=1307017 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 16:08:33] 2026-01-26 21:08:30,873 | INFO     | .. there are 34 such processes running
[2026-01-26 16:08:33] 2026-01-26 21:08:30,873 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 16:08:33] 2026-01-26 21:08:30,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 16:08:33] 2026-01-26 21:08:30,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 16:08:33] 2026-01-26 21:08:30,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 16:08:33] 2026-01-26 21:08:30,874 | INFO     | [monitor] control thread has ended
[2026-01-26 16:08:33] 2026-01-26 21:08:32,454 [wrapper] ==== pilot stdout END ====
[2026-01-26 16:08:33] 2026-01-26 21:08:32,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 16:08:33] 2026-01-26 21:08:32,494 [wrapper] pilotpid: 1307017
[2026-01-26 16:08:33] 2026-01-26 21:08:32,517 [wrapper] Pilot exit status: 0
[2026-01-26 16:08:33] 2026-01-26 21:08:32,657 [wrapper] pandaids: 6984042496
[2026-01-26 16:08:33] 2026-01-26 21:08:32,842 [wrapper] cleanup supervisor_pilot 2664347 1307018
[2026-01-26 16:08:33] 2026-01-26 21:08:32,853 [wrapper] Test setup, not cleaning
[2026-01-26 16:08:33] 2026-01-26 21:08:32,860 [wrapper] apfmon messages muted
[2026-01-26 16:08:33] 2026-01-26 21:08:32,868 [wrapper] ==== wrapper stdout END ====
[2026-01-26 16:08:33] 2026-01-26 21:08:32,889 [wrapper] ==== wrapper stderr END ====
[2026-01-26 16:08:33]  *** Error codes and diagnostics ***
[2026-01-26 16:08:33]     "exeErrorCode": 0,
[2026-01-26 16:08:33]     "exeErrorDiag": "",
[2026-01-26 16:08:33]     "pilotErrorCode": 0,
[2026-01-26 16:08:33]     "pilotErrorDiag": "",
[2026-01-26 16:08:33]  *** Listing of results directory ***
[2026-01-26 16:08:33] total 435536
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas      5111 Jan 26 00:14 queuedata.json
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-26 16:08:33] -rwx------. 1 boincer umatlas     36322 Jan 26 00:14 runpilot2-wrapper.sh
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas       100 Jan 26 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 16:08:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 12:49 run_atlas
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas       105 Jan 26 12:49 job.xml
[2026-01-26 16:08:33] -rw-r--r--. 2 boincer umatlas 252528317 Jan 26 12:49 EVNT.47929390._000201.pool.root.1
[2026-01-26 16:08:33] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 12:49 start_atlas.sh
[2026-01-26 16:08:33] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 12:49 shared
[2026-01-26 16:08:33] -rw-r--r--. 2 boincer umatlas    597750 Jan 26 12:49 input.tar.gz
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas         0 Jan 26 12:49 boinc_lockfile
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas      2550 Jan 26 12:49 pandaJob.out
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas        57 Jan 26 12:49 setup.sh.local
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas   1006384 Jan 26 12:49 agis_schedconf.cvmfs.json
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas       432 Jan 26 12:49 workernode_map.json
[2026-01-26 16:08:33] drwx------. 5 boincer umatlas      4096 Jan 26 12:49 pilot3
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas      7186 Jan 26 16:00 init_data.xml
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas 185707883 Jan 26 16:06 HITS.47929392._005197.pool.root.1
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas       530 Jan 26 16:06 boinc_task_state.xml
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas      1047 Jan 26 16:07 memory_monitor_summary.json
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas   1516246 Jan 26 16:07 agis_ddmendpoints.agis.ALL.json
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas    425704 Jan 26 16:07 log.47929392._005197.job.log.tgz.1
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas      6356 Jan 26 16:07 heartbeat.json
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas        95 Jan 26 16:08 pilot_heartbeat.json
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas       823 Jan 26 16:08 pilotlog.txt
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas        28 Jan 26 16:08 wrapper_checkpoint.txt
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 16:08 boinc_mmap_file
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas   1485349 Jan 26 16:08 log.47929392._005197.job.log.1
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas       357 Jan 26 16:08 output.list
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas       620 Jan 26 16:08 runtime_log
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas   1925120 Jan 26 16:08 result.tar.gz
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas      9342 Jan 26 16:08 runtime_log.err
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas       659 Jan 26 16:08 7aVNDmy6T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyV2KDmdmxnxm.diag
[2026-01-26 16:08:33] -rw-r--r--. 1 boincer umatlas     21385 Jan 26 16:08 stderr.txt
[2026-01-26 16:08:33] HITS file was successfully produced:
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas 185707883 Jan 26 16:06 shared/HITS.pool.root.1
[2026-01-26 16:08:33]  *** Contents of shared directory: ***
[2026-01-26 16:08:33] total 430452
[2026-01-26 16:08:33] -rw-r--r--. 2 boincer umatlas 252528317 Jan 26 12:49 ATLAS.root_0
[2026-01-26 16:08:33] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 12:49 start_atlas.sh
[2026-01-26 16:08:33] -rw-r--r--. 2 boincer umatlas    597750 Jan 26 12:49 input.tar.gz
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas 185707883 Jan 26 16:06 HITS.pool.root.1
[2026-01-26 16:08:33] -rw-------. 1 boincer umatlas   1925120 Jan 26 16:08 result.tar.gz
16:08:35 (1301540): run_atlas exited; CPU time 23376.432078
16:08:35 (1301540): called boinc_finish(0)

</stderr_txt>
]]>

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