Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:25:48 (2832502): wrapper (7.7.26015): starting
19:25:48 (2832502): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 19:25:48] Arguments: --nthreads 3
[2026-01-26 19:25:48] Threads: 3
[2026-01-26 19:25:48] Checking for CVMFS
[2026-01-26 19:25:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:25:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:25:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:25:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:25:49] 2.9.2.0 2754789 473 53580 155556 0 50 13316540 36864001 0 130560 0 200155 99.978 19073 586 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 19:25:49] CVMFS is ok
[2026-01-26 19:25:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:25:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:25:49] Further information can be found at the LHC@home message board.
[2026-01-26 19:25:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:25:49] Checking for apptainer binary...
[2026-01-26 19:25:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:25:49] Running /usr/bin/apptainer --version
[2026-01-26 19:25:49] apptainer version 1.4.1-1.1
[2026-01-26 19:25:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:25:49] thA330a
[2026-01-26 19:25:49] apptainer works
[2026-01-26 19:25:49] Set ATHENA_PROC_NUMBER=3
[2026-01-26 19:25:49] Set ATHENA_CORE_NUMBER=3
[2026-01-26 19:25:49] Starting ATLAS job with PandaID=6981854995
[2026-01-26 19:25:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 20:40:29]  *** The last 200 lines of the pilot log: ***
[2026-01-26 20:40:29] 2026-01-26 19:39:58,983 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 20:40:29] 2026-01-26 19:39:58,983 | INFO     | **************************************
[2026-01-26 20:40:29] 2026-01-26 19:39:58,983 | INFO     | 
[2026-01-26 20:40:29] 2026-01-26 19:39:58,983 | INFO     | architecture information:
[2026-01-26 20:40:29] 2026-01-26 19:39:58,983 | INFO     | executing command: cat /etc/os-release
[2026-01-26 20:40:29] 2026-01-26 19:39:58,992 | INFO     | cat /etc/os-release:
[2026-01-26 20:40:29] NAME="CentOS Linux"
[2026-01-26 20:40:29] VERSION="7 (Core)"
[2026-01-26 20:40:29] ID="centos"
[2026-01-26 20:40:29] ID_LIKE="rhel fedora"
[2026-01-26 20:40:29] VERSION_ID="7"
[2026-01-26 20:40:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 20:40:29] ANSI_COLOR="0;31"
[2026-01-26 20:40:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 20:40:29] HOME_URL="https://www.centos.org/"
[2026-01-26 20:40:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 20:40:29] 
[2026-01-26 20:40:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 20:40:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 20:40:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 20:40:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 20:40:29] 
[2026-01-26 20:40:29] 2026-01-26 19:39:58,992 | INFO     | **************************************
[2026-01-26 20:40:29] 2026-01-26 19:39:59,131 | WARNING  | process 2840971 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 20:40:29] 2026-01-26 19:39:59,163 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 20:40:29] 2026-01-26 19:39:59,204 | INFO     | number of running child processes to parent process 2840971: 1
[2026-01-26 20:40:29] 2026-01-26 19:39:59,204 | INFO     | maximum number of monitored processes: 6
[2026-01-26 20:40:29] 2026-01-26 19:39:59,204 | INFO     | aborting job monitoring since job object (job id=6981854995) has expired
[2026-01-26 20:40:29] 2026-01-26 19:39:59,495 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 20:40:29] 2026-01-26 19:39:59,507 | INFO     | sufficient remaining disk space (247797383168 B)
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | INFO     | update_server=False
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:40:29] 2026-01-26 19:39:59,508 | INFO     | will abort loop
[2026-01-26 20:40:29] 2026-01-26 19:39:59,890 | INFO     | all data control threads have been joined
[2026-01-26 20:40:29] 2026-01-26 19:40:00,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 20:40:29] 2026-01-26 19:40:00,105 | INFO     | all job control threads have been joined
[2026-01-26 20:40:29] 2026-01-26 19:40:00,511 | INFO     | [job] job monitor thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,511 | INFO     | [job] retrieve thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,513 | INFO     | [job] queue monitor thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,514 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,704 | INFO     | [payload] validate_post thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,706 | INFO     | all payload control threads have been joined
[2026-01-26 20:40:29] 2026-01-26 19:40:00,895 | INFO     | [data] control thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,927 | INFO     | [payload] failed_post thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:00,985 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:01,111 | INFO     | [job] control thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:01,138 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:01,146 | INFO     | [data] copytool_in thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:01,206 | INFO     | [job] validate thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:01,712 | INFO     | [payload] control thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:01,773 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:02,025 | INFO     | [data] copytool_out thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:02,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 20:40:29] 2026-01-26 19:40:05,217 | INFO     | [monitor] cgroup control has ended
[2026-01-26 20:40:29] 2026-01-26 19:40:06,163 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 20:40:29] 2026-01-26 19:40:07,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622038959936)>', '<ExcThread(monitor, started 140621683599104)>']
[2026-01-26 20:40:29] 2026-01-26 19:40:12,227 | INFO     | all workflow threads have been joined
[2026-01-26 20:40:29] 2026-01-26 19:40:12,227 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 20:40:29] 2026-01-26 19:40:12,227 | INFO     | traces error code: 0
[2026-01-26 20:40:29] 2026-01-26 19:40:12,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | INFO     | PID=2836548 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 20:40:29] 2026-01-26 19:40:29,407 | INFO     | [monitor] control thread has ended
[2026-01-26 20:40:29] 2026-01-26 19:40:29,458 [wrapper] ==== pilot stdout END ====
[2026-01-26 20:40:29] 2026-01-26 19:40:29,460 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 20:40:29] 2026-01-26 19:40:29,462 [wrapper] pilotpid: 2836548
[2026-01-26 20:40:29] 2026-01-26 19:40:29,465 [wrapper] Pilot exit status: 0
[2026-01-26 20:40:29] 2026-01-26 19:40:29,472 [wrapper] pandaids: 6981854995
[2026-01-26 20:40:29] 2026-01-26 19:40:29,488 [wrapper] cleanup supervisor_pilot 2845962 2836549
[2026-01-26 20:40:29] 2026-01-26 19:40:29,490 [wrapper] Test setup, not cleaning
[2026-01-26 20:40:29] 2026-01-26 19:40:29,493 [wrapper] apfmon messages muted
[2026-01-26 20:40:29] 2026-01-26 19:40:29,495 [wrapper] ==== wrapper stdout END ====
[2026-01-26 20:40:29] 2026-01-26 19:40:29,497 [wrapper] ==== wrapper stderr END ====
[2026-01-26 20:40:29]  *** Error codes and diagnostics ***
[2026-01-26 20:40:29]     "exeErrorCode": 0,
[2026-01-26 20:40:29]     "exeErrorDiag": "",
[2026-01-26 20:40:29]     "pilotErrorCode": 0,
[2026-01-26 20:40:29]     "pilotErrorDiag": "",
[2026-01-26 20:40:29]  *** Listing of results directory ***
[2026-01-26 20:40:29] total 672352
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc    584422 Jan 24 22:51 pilot3.tar.gz
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc      5111 Jan 24 22:52 queuedata.json
[2026-01-26 20:40:29] -rwx------ 1 boinc boinc     36322 Jan 24 22:52 runpilot2-wrapper.sh
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc       100 Jan 26 19:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 20:40:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 19:25 run_atlas
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc       105 Jan 26 19:25 job.xml
[2026-01-26 20:40:29] -rw-r--r-- 2 boinc boinc 500582249 Jan 26 19:25 EVNT.48310824._000044.pool.root.1
[2026-01-26 20:40:29] -rw-r--r-- 2 boinc boinc    597760 Jan 26 19:25 input.tar.gz
[2026-01-26 20:40:29] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:25 start_atlas.sh
[2026-01-26 20:40:29] drwxrwx--x 2 boinc boinc      4096 Jan 26 19:25 shared
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:25 boinc_setup_complete
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc      6440 Jan 26 19:25 init_data.xml
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:25 boinc_lockfile
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc      2522 Jan 26 19:25 pandaJob.out
[2026-01-26 20:40:29] -rw------- 1 boinc boinc   1006384 Jan 26 19:25 agis_schedconf.cvmfs.json
[2026-01-26 20:40:29] -rw------- 1 boinc boinc   1516246 Jan 26 19:25 agis_ddmendpoints.agis.ALL.json
[2026-01-26 20:40:29] -rw------- 1 boinc boinc       427 Jan 26 19:25 workernode_map.json
[2026-01-26 20:40:29] drwx------ 5 boinc boinc      4096 Jan 26 19:25 pilot3
[2026-01-26 20:40:29] -rw------- 1 boinc boinc 182176137 Jan 26 20:39 HITS.48310826._006214.pool.root.1
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc       530 Jan 26 20:39 boinc_task_state.xml
[2026-01-26 20:40:29] -rw------- 1 boinc boinc      1015 Jan 26 20:39 memory_monitor_summary.json
[2026-01-26 20:40:29] -rw------- 1 boinc boinc    242825 Jan 26 20:39 log.48310826._006214.job.log.tgz.1
[2026-01-26 20:40:29] -rw------- 1 boinc boinc      6309 Jan 26 20:39 heartbeat.json
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc      8192 Jan 26 20:40 boinc_mmap_file
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc        27 Jan 26 20:40 wrapper_checkpoint.txt
[2026-01-26 20:40:29] -rw------- 1 boinc boinc       817 Jan 26 20:40 pilotlog.txt
[2026-01-26 20:40:29] -rw------- 1 boinc boinc        95 Jan 26 20:40 pilot_heartbeat.json
[2026-01-26 20:40:29] -rw------- 1 boinc boinc    655903 Jan 26 20:40 log.48310826._006214.job.log.1
[2026-01-26 20:40:29] -rw------- 1 boinc boinc       357 Jan 26 20:40 output.list
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc       620 Jan 26 20:40 runtime_log
[2026-01-26 20:40:29] -rw------- 1 boinc boinc    921600 Jan 26 20:40 result.tar.gz
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc      8901 Jan 26 20:40 runtime_log.err
[2026-01-26 20:40:29] -rw------- 1 boinc boinc       658 Jan 26 20:40 qDQNDm0j038n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLNzKDm3qIY4m.diag
[2026-01-26 20:40:29] -rw-r--r-- 1 boinc boinc      9948 Jan 26 20:40 stderr.txt
[2026-01-26 20:40:29] HITS file was successfully produced:
[2026-01-26 20:40:29] -rw------- 1 boinc boinc 182176137 Jan 26 20:39 shared/HITS.pool.root.1
[2026-01-26 20:40:29]  *** Contents of shared directory: ***
[2026-01-26 20:40:29] total 668268
[2026-01-26 20:40:29] -rw-r--r-- 2 boinc boinc 500582249 Jan 26 19:25 ATLAS.root_0
[2026-01-26 20:40:29] -rw-r--r-- 2 boinc boinc    597760 Jan 26 19:25 input.tar.gz
[2026-01-26 20:40:29] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:25 start_atlas.sh
[2026-01-26 20:40:29] -rw------- 1 boinc boinc 182176137 Jan 26 20:39 HITS.pool.root.1
[2026-01-26 20:40:29] -rw------- 1 boinc boinc    921600 Jan 26 20:40 result.tar.gz
20:40:30 (2832502): run_atlas exited; CPU time 12665.643851
20:40:30 (2832502): called boinc_finish(0)

</stderr_txt>
]]>

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