Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:03:15 (23833): wrapper (7.7.26015): starting
12:03:15 (23833): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 12:03:15] Arguments: --nthreads 12
[2026-01-26 12:03:15] Threads: 12
[2026-01-26 12:03:15] Checking for CVMFS
[2026-01-26 12:03:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 12:03:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 12:03:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 12:03:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 12:03:16] 2.11.2.0 3081 375750 98480 155554 2 50 12159917 20275200 1 130560 1 160497192 99.949 22465713 16829 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 12:03:16] CVMFS is ok
[2026-01-26 12:03:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 12:03:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 12:03:16] Further information can be found at the LHC@home message board.
[2026-01-26 12:03:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:03:16] Checking for apptainer binary...
[2026-01-26 12:03:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 12:03:16] Running /usr/bin/apptainer --version
[2026-01-26 12:03:16] apptainer version 1.3.2-1.el7
[2026-01-26 12:03:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:03:17] c-205-29.aglt2.org
[2026-01-26 12:03:17] apptainer works
[2026-01-26 12:03:17] Set ATHENA_PROC_NUMBER=12
[2026-01-26 12:03:17] Set ATHENA_CORE_NUMBER=12
[2026-01-26 12:03:17] Starting ATLAS job with PandaID=6982978551
[2026-01-26 12:03:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 13:15:12]  *** The last 200 lines of the pilot log: ***
[2026-01-26 13:15:12]  filesize=382936
[2026-01-26 13:15:12]  filetype=log
[2026-01-26 13:15:12]  guid=8121bac0-8ed1-4cd9-8353-6befbee940f6
[2026-01-26 13:15:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 13:15:12]  is_altstaged=None
[2026-01-26 13:15:12]  is_tar=False
[2026-01-26 13:15:12]  lfn=log.48310724._008567.job.log.tgz.1
[2026-01-26 13:15:12]  mtime=0
[2026-01-26 13:15:12]  protocol_id=None
[2026-01-26 13:15:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 13:15:12]  replicas=None
[2026-01-26 13:15:12]  scope=mc23_13p6TeV
[2026-01-26 13:15:12]  status=None
[2026-01-26 13:15:12]  status_code=0
[2026-01-26 13:15:12]  storage_token=
[2026-01-26 13:15:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6982978551/log.48310724._008567.job.log.tgz.1
[2026-01-26 13:15:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/56/log.48310724._008567.job.log.tgz.1
[2026-01-26 13:15:12]  workdir=None
[2026-01-26 13:15:12] ]
[2026-01-26 13:15:12] 2026-01-26 18:14:37,099 | INFO     | transferring file log.48310724._008567.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6982978551/log.48310724._008567.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 13:15:12] 2026-01-26 18:14:37,100 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6982978551/log.48310724._008567.job.log.tgz.1 /tmp/boinchome/slots/0/log.48310724._008567.job
[2026-01-26 13:15:12] 2026-01-26 18:14:37,122 | INFO     | adding to output.list: log.48310724._008567.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/56/log.48310724._008567.job.log.tg
[2026-01-26 13:15:12] 2026-01-26 18:14:37,122 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 13:15:12] 2026-01-26 18:14:37,123 | INFO     | summary of transferred files:
[2026-01-26 13:15:12] 2026-01-26 18:14:37,123 | INFO     |  -- lfn=log.48310724._008567.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 13:15:12] 2026-01-26 18:14:37,123 | INFO     | stage-out finished correctly
[2026-01-26 13:15:12] 2026-01-26 18:14:37,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 13:15:12] 2026-01-26 18:14:38,091 | INFO     | PID=27918 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 13:15:12] 2026-01-26 18:14:38,923 | INFO     | monitor loop #325: job 0:6982978551 is in state 'finished'
[2026-01-26 13:15:12] 2026-01-26 18:14:38,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 13:15:12] 2026-01-26 18:14:39,091 | INFO     | time since job start (4261s) is within the limit (349056.0s)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,323 | INFO     | job 6982978551 has state=finished
[2026-01-26 13:15:12] 2026-01-26 18:14:40,323 | INFO     | preparing for final server update for job 6982978551 in state='finished'
[2026-01-26 13:15:12] 2026-01-26 18:14:40,323 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6982978551/jobReport.json
[2026-01-26 13:15:12] 2026-01-26 18:14:40,327 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-26 13:15:12] 2026-01-26 18:14:40,327 | INFO     | this job has now completed (state=finished)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,328 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,328 | INFO     | log transfer has been attempted: DONE
[2026-01-26 13:15:12] 2026-01-26 18:14:40,328 | INFO     | job 6982978551 has finished - writing final server update
[2026-01-26 13:15:12] 2026-01-26 18:14:40,328 | INFO     | total number of processed events: 400 (read)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,331 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6982978551/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,332 | INFO     | extracted standard info from prmon json
[2026-01-26 13:15:12] 2026-01-26 18:14:40,332 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 13:15:12] 2026-01-26 18:14:40,332 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 13:15:12] 2026-01-26 18:14:40,333 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 13:15:12] 2026-01-26 18:14:40,333 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 13:15:12] 2026-01-26 18:14:40,334 | INFO     | fitting pss+swap vs Time
[2026-01-26 13:15:12] 2026-01-26 18:14:40,334 | INFO     | sum of square deviations: 77515872.0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,335 | INFO     | sum of deviations: -2933187927.9999995
[2026-01-26 13:15:12] 2026-01-26 18:14:40,335 | INFO     | mean x: 1769449238.0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,335 | INFO     | mean y: 2711550.0476190476
[2026-01-26 13:15:12] 2026-01-26 18:14:40,335 | INFO     | intersect: 66958381533.48532
[2026-01-26 13:15:12] 2026-01-26 18:14:40,335 | INFO     | chi2: 0.04739872826548928
[2026-01-26 13:15:12] 2026-01-26 18:14:40,335 | INFO     | current memory leak: -37.84 B/s (using 63 data points, chi2=0.05)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | ..............................
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | . Timing measurements:
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | . get job = 0 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | . initial setup = 7 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | . payload setup = 7 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | . stage-in = 0 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,336 | INFO     | . payload execution = 4235 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,337 | INFO     | . stage-out = 0 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,337 | INFO     | . log creation = 0 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,337 | INFO     | ..............................
[2026-01-26 13:15:12] 2026-01-26 18:14:40,413 | INFO     | 
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | job summary report
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | --------------------------------------------------
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | PanDA job id: 6982978551
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | task id: 48310724
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | errors: (none)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 13:15:12] 2026-01-26 18:14:40,414 | INFO     | pilot state: finished 
[2026-01-26 13:15:12] 2026-01-26 18:14:40,415 | INFO     | transexitcode: 0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,415 | INFO     | exeerrorcode: 0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,415 | INFO     | exeerrordiag: 
[2026-01-26 13:15:12] 2026-01-26 18:14:40,415 | INFO     | exitcode: 0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,415 | INFO     | exitmsg: OK
[2026-01-26 13:15:12] 2026-01-26 18:14:40,415 | INFO     | cpuconsumptiontime: 44600 s
[2026-01-26 13:15:12] 2026-01-26 18:14:40,416 | INFO     | nevents: 400
[2026-01-26 13:15:12] 2026-01-26 18:14:40,416 | INFO     | neventsw: 0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,416 | INFO     | pid: 32314
[2026-01-26 13:15:12] 2026-01-26 18:14:40,416 | INFO     | pgrp: 32314
[2026-01-26 13:15:12] 2026-01-26 18:14:40,416 | INFO     | corecount: 12
[2026-01-26 13:15:12] 2026-01-26 18:14:40,416 | INFO     | event service: False
[2026-01-26 13:15:12] 2026-01-26 18:14:40,417 | INFO     | sizes: {0: 2283818, 1: 2284279, 11: 2284279, 4247: 2310122, 4248: 2319176, 4251: 2319314}
[2026-01-26 13:15:12] 2026-01-26 18:14:40,417 | INFO     | --------------------------------------------------
[2026-01-26 13:15:12] 2026-01-26 18:14:40,417 | INFO     | 
[2026-01-26 13:15:12] 2026-01-26 18:14:40,417 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-26 13:15:12] 2026-01-26 18:14:40,441 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,441 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,441 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,441 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,444 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,444 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 13:15:12] 2026-01-26 18:14:40,444 | INFO     | job 6982978551 has completed (purged errors)
[2026-01-26 13:15:12] 2026-01-26 18:14:40,444 | INFO     | overall cleanup function is called
[2026-01-26 13:15:12] 2026-01-26 18:14:41,452 | INFO     | --- collectZombieJob: --- 10, [32314]
[2026-01-26 13:15:12] 2026-01-26 18:14:41,452 | INFO     | zombie collector waiting for pid 32314
[2026-01-26 13:15:12] 2026-01-26 18:14:41,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 13:15:12] 2026-01-26 18:14:41,452 | INFO     | collected zombie processes
[2026-01-26 13:15:12] 2026-01-26 18:14:41,452 | INFO     | will attempt to kill all subprocesses of pid=32314
[2026-01-26 13:15:12] 2026-01-26 18:14:41,537 | INFO     | process IDs to be killed: [32314] (in reverse order)
[2026-01-26 13:15:12] 2026-01-26 18:14:41,589 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 13:15:12] 2026-01-26 18:14:41,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 13:15:12] 2026-01-26 18:14:41,593 | INFO     | did not find any defunct processes belonging to 32314
[2026-01-26 13:15:12] 2026-01-26 18:14:41,595 | INFO     | did not find any defunct processes belonging to 32314
[2026-01-26 13:15:12] 2026-01-26 18:14:41,596 | INFO     | ready for new job
[2026-01-26 13:15:12] 2026-01-26 18:14:41,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 13:15:12] 2026-01-26 18:14:41,597 | INFO     | **************************************
[2026-01-26 13:15:12] 2026-01-26 18:14:41,597 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 13:15:12] 2026-01-26 18:14:41,597 | INFO     | **************************************
[2026-01-26 13:15:12] 2026-01-26 18:14:41,597 | INFO     | 
[2026-01-26 13:15:12] 2026-01-26 18:14:41,598 | INFO     | architecture information:
[2026-01-26 13:15:12] 2026-01-26 18:14:41,598 | INFO     | executing command: cat /etc/os-release
[2026-01-26 13:15:12] 2026-01-26 18:14:41,614 | INFO     | cat /etc/os-release:
[2026-01-26 13:15:12] NAME="CentOS Linux"
[2026-01-26 13:15:12] VERSION="7 (Core)"
[2026-01-26 13:15:12] ID="centos"
[2026-01-26 13:15:12] ID_LIKE="rhel fedora"
[2026-01-26 13:15:12] VERSION_ID="7"
[2026-01-26 13:15:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 13:15:12] ANSI_COLOR="0;31"
[2026-01-26 13:15:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 13:15:12] HOME_URL="https://www.centos.org/"
[2026-01-26 13:15:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 13:15:12] 
[2026-01-26 13:15:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 13:15:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 13:15:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 13:15:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 13:15:12] 
[2026-01-26 13:15:12] 2026-01-26 18:14:41,614 | INFO     | **************************************
[2026-01-26 13:15:12] 2026-01-26 18:14:42,117 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-26 13:15:12] 2026-01-26 18:14:42,134 | INFO     | sufficient remaining disk space (28806479872 B)
[2026-01-26 13:15:12] 2026-01-26 18:14:42,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 13:15:12] 2026-01-26 18:14:42,134 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 13:15:12] 2026-01-26 18:14:42,135 | INFO     | update_server=False
[2026-01-26 13:15:12] 2026-01-26 18:14:42,135 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 13:15:12] 2026-01-26 18:14:42,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:15:12] 2026-01-26 18:14:42,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:15:12] 2026-01-26 18:14:42,432 | INFO     | aborting loop
[2026-01-26 13:15:12] 2026-01-26 18:14:42,596 | INFO     | all job control threads have been joined
[2026-01-26 13:15:12] 2026-01-26 18:14:42,663 | INFO     | all data control threads have been joined
[2026-01-26 13:15:12] 2026-01-26 18:14:42,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 13:15:12] 2026-01-26 18:14:42,778 | INFO     | all payload control threads have been joined
[2026-01-26 13:15:12] 2026-01-26 18:14:43,139 | INFO     | [job] queue monitor thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,140 | INFO     | [job] retrieve thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,143 | INFO     | [data] copytool_in thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,174 | INFO     | [payload] failed_post thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,255 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,438 | INFO     | [job] job monitor thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,602 | INFO     | [job] control thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,669 | INFO     | [data] control thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,773 | INFO     | [job] validate thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,778 | INFO     | [payload] validate_post thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:43,782 | INFO     | [payload] control thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:44,073 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:44,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 13:15:12] 2026-01-26 18:14:44,294 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:44,715 | INFO     | [monitor] cgroup control has ended
[2026-01-26 13:15:12] 2026-01-26 18:14:44,719 | INFO     | [data] copytool_out thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:48,085 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:52,379 | INFO     | job.realtimelogging is not enabled
[2026-01-26 13:15:12] 2026-01-26 18:14:53,384 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 13:15:12] 2026-01-26 18:14:54,085 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140499301214016)>', '<ExcThread(monitor, started 140498513688320)>']
[2026-01-26 13:15:12] 2026-01-26 18:14:59,111 | INFO     | all workflow threads have been joined
[2026-01-26 13:15:12] 2026-01-26 18:14:59,115 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 13:15:12] 2026-01-26 18:14:59,117 | INFO     | traces error code: 0
[2026-01-26 13:15:12] 2026-01-26 18:14:59,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 13:15:12] 2026-01-26 18:15:12,293 | INFO     | PID=27918 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 13:15:12] 2026-01-26 18:15:12,294 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 13:15:12] 2026-01-26 18:15:12,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 13:15:12] 2026-01-26 18:15:12,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 13:15:12] 2026-01-26 18:15:12,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 13:15:12] 2026-01-26 18:15:12,294 | INFO     | [monitor] control thread has ended
[2026-01-26 13:15:12] 2026-01-26 18:15:12,392 [wrapper] ==== pilot stdout END ====
[2026-01-26 13:15:12] 2026-01-26 18:15:12,396 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 13:15:12] 2026-01-26 18:15:12,400 [wrapper] pilotpid: 27918
[2026-01-26 13:15:12] 2026-01-26 18:15:12,404 [wrapper] Pilot exit status: 0
[2026-01-26 13:15:12] 2026-01-26 18:15:12,419 [wrapper] pandaids: 6982978551
[2026-01-26 13:15:12] 2026-01-26 18:15:12,457 [wrapper] cleanup supervisor_pilot 20996 27919
[2026-01-26 13:15:12] 2026-01-26 18:15:12,462 [wrapper] Test setup, not cleaning
[2026-01-26 13:15:12] 2026-01-26 18:15:12,466 [wrapper] apfmon messages muted
[2026-01-26 13:15:12] 2026-01-26 18:15:12,469 [wrapper] ==== wrapper stdout END ====
[2026-01-26 13:15:12] 2026-01-26 18:15:12,473 [wrapper] ==== wrapper stderr END ====
[2026-01-26 13:15:12]  *** Error codes and diagnostics ***
[2026-01-26 13:15:12]     "exeErrorCode": 0,
[2026-01-26 13:15:12]     "exeErrorDiag": "",
[2026-01-26 13:15:12]     "pilotErrorCode": 0,
[2026-01-26 13:15:12]     "pilotErrorDiag": "",
[2026-01-26 13:15:12]  *** Listing of results directory ***
[2026-01-26 13:15:12] total 667272
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas      5111 Jan 25 06:28 queuedata.json
[2026-01-26 13:15:12] -rwx------ 1 boincer umatlas     36322 Jan 25 06:28 runpilot2-wrapper.sh
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas    584422 Jan 25 06:29 pilot3.tar.gz
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas       100 Jan 26 12:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 13:15:12] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 12:03 run_atlas
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas       105 Jan 26 12:03 job.xml
[2026-01-26 13:15:12] -rw-r--r-- 2 boincer umatlas 495612643 Jan 26 12:03 EVNT.48310721._000172.pool.root.1
[2026-01-26 13:15:12] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 12:03 start_atlas.sh
[2026-01-26 13:15:12] drwxrwx--x 2 boincer umatlas      4096 Jan 26 12:03 shared
[2026-01-26 13:15:12] -rw-r--r-- 2 boincer umatlas    597765 Jan 26 12:03 input.tar.gz
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas         0 Jan 26 12:03 boinc_lockfile
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas      2533 Jan 26 12:03 pandaJob.out
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas        57 Jan 26 12:03 setup.sh.local
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas   1006276 Jan 26 12:03 agis_schedconf.cvmfs.json
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas   1516246 Jan 26 12:03 agis_ddmendpoints.agis.ALL.json
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas       445 Jan 26 12:03 workernode_map.json
[2026-01-26 13:15:12] drwx------ 5 boincer umatlas      4096 Jan 26 12:03 pilot3
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas      5953 Jan 26 13:12 init_data.xml
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas 181714983 Jan 26 13:14 HITS.48310724._008567.pool.root.1
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas        95 Jan 26 13:14 pilot_heartbeat.json
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas      1042 Jan 26 13:14 memory_monitor_summary.json
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas       530 Jan 26 13:14 boinc_task_state.xml
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas    382936 Jan 26 13:14 log.48310724._008567.job.log.tgz.1
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas      6417 Jan 26 13:14 heartbeat.json
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 13:14 boinc_mmap_file
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas        27 Jan 26 13:14 wrapper_checkpoint.txt
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas       745 Jan 26 13:15 pilotlog.txt
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas    622878 Jan 26 13:15 log.48310724._008567.job.log.1
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas       357 Jan 26 13:15 output.list
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas       620 Jan 26 13:15 runtime_log
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas   1024000 Jan 26 13:15 result.tar.gz
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas      9343 Jan 26 13:15 runtime_log.err
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas       659 Jan 26 13:15 gZPLDmNTD48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXm0KDmBDNFjm.diag
[2026-01-26 13:15:12] -rw-r--r-- 1 boincer umatlas     21287 Jan 26 13:15 stderr.txt
[2026-01-26 13:15:12] HITS file was successfully produced:
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas 181714983 Jan 26 13:14 shared/HITS.pool.root.1
[2026-01-26 13:15:12]  *** Contents of shared directory: ***
[2026-01-26 13:15:12] total 663068
[2026-01-26 13:15:12] -rw-r--r-- 2 boincer umatlas 495612643 Jan 26 12:03 ATLAS.root_0
[2026-01-26 13:15:12] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 12:03 start_atlas.sh
[2026-01-26 13:15:12] -rw-r--r-- 2 boincer umatlas    597765 Jan 26 12:03 input.tar.gz
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas 181714983 Jan 26 13:14 HITS.pool.root.1
[2026-01-26 13:15:12] -rw------- 1 boincer umatlas   1024000 Jan 26 13:15 result.tar.gz
13:15:13 (23833): run_atlas exited; CPU time 44581.306173
13:15:13 (23833): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN