Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:51:04 (23417): wrapper (7.7.26015): starting
11:51:04 (23417): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 11:51:04] Arguments: --nthreads 12
[2026-01-26 11:51:04] Threads: 12
[2026-01-26 11:51:04] Checking for CVMFS
[2026-01-26 11:51:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 11:51:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 11:51:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 11:51:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 11:51:05] 2.11.2.0 2924 375738 105052 155554 2 50 11256500 20275200 1 130560 4 161845526 99.949 23354655 16534 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 11:51:05] CVMFS is ok
[2026-01-26 11:51:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 11:51:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 11:51:05] Further information can be found at the LHC@home message board.
[2026-01-26 11:51:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 11:51:05] Checking for apptainer binary...
[2026-01-26 11:51:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 11:51:05] Running /usr/bin/apptainer --version
[2026-01-26 11:51:05] apptainer version 1.3.2-1.el7
[2026-01-26 11:51:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 11:51:06] c-205-28.aglt2.org
[2026-01-26 11:51:06] apptainer works
[2026-01-26 11:51:06] Set ATHENA_PROC_NUMBER=12
[2026-01-26 11:51:06] Set ATHENA_CORE_NUMBER=12
[2026-01-26 11:51:06] Starting ATLAS job with PandaID=6983014527
[2026-01-26 11:51:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:12:40 (8237): wrapper (7.7.26015): starting
12:12:40 (8237): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 12:12:40] Arguments: --nthreads 12
[2026-01-26 12:12:40] Threads: 12
[2026-01-26 12:12:40] This job has been restarted, cleaning up previous attempt
[2026-01-26 12:12:40] Checking for CVMFS
[2026-01-26 12:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 12:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 12:12:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 12:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 12:12:40] 2.11.2.0 2924 375760 105124 155554 1 188 11274049 20275200 1 130560 4 161895701 99.949 23355088 16534 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 12:12:40] CVMFS is ok
[2026-01-26 12:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 12:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 12:12:40] Further information can be found at the LHC@home message board.
[2026-01-26 12:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 12:12:40] Checking for apptainer binary...
[2026-01-26 12:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 12:12:40] Running /usr/bin/apptainer --version
[2026-01-26 12:12:40] apptainer version 1.3.2-1.el7
[2026-01-26 12:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 12:12:42] c-205-28.aglt2.org
[2026-01-26 12:12:42] apptainer works
[2026-01-26 12:12:42] Set ATHENA_PROC_NUMBER=12
[2026-01-26 12:12:42] Set ATHENA_CORE_NUMBER=12
[2026-01-26 12:12:42] Starting ATLAS job with PandaID=6983014527
[2026-01-26 12:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 13:31:10]  *** The last 200 lines of the pilot log: ***
[2026-01-26 13:31:10]  filetype=log
[2026-01-26 13:31:10]  guid=4208e463-223b-404e-a3c1-6836f21ea4ca
[2026-01-26 13:31:10]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 13:31:10]  is_altstaged=None
[2026-01-26 13:31:10]  is_tar=False
[2026-01-26 13:31:10]  lfn=log.48317931._000535.job.log.tgz.1
[2026-01-26 13:31:10]  mtime=0
[2026-01-26 13:31:10]  protocol_id=None
[2026-01-26 13:31:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 13:31:10]  replicas=None
[2026-01-26 13:31:10]  scope=mc23_13p6TeV
[2026-01-26 13:31:10]  status=None
[2026-01-26 13:31:10]  status_code=0
[2026-01-26 13:31:10]  storage_token=
[2026-01-26 13:31:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6983014527/log.48317931._000535.job.log.tgz.1
[2026-01-26 13:31:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/33/log.48317931._000535.job.log.tgz.1
[2026-01-26 13:31:10]  workdir=None
[2026-01-26 13:31:10] ]
[2026-01-26 13:31:10] 2026-01-26 18:30:06,891 | INFO     | transferring file log.48317931._000535.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6983014527/log.48317931._000535.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 13:31:10] 2026-01-26 18:30:06,892 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6983014527/log.48317931._000535.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317931._000535.job
[2026-01-26 13:31:10] 2026-01-26 18:30:06,913 | INFO     | adding to output.list: log.48317931._000535.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/33/log.48317931._000535.job.log.tg
[2026-01-26 13:31:10] 2026-01-26 18:30:06,914 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 13:31:10] 2026-01-26 18:30:06,914 | INFO     | summary of transferred files:
[2026-01-26 13:31:10] 2026-01-26 18:30:06,914 | INFO     |  -- lfn=log.48317931._000535.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 13:31:10] 2026-01-26 18:30:06,914 | INFO     | stage-out finished correctly
[2026-01-26 13:31:10] 2026-01-26 18:30:06,997 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 13:31:10] 2026-01-26 18:30:07,169 | WARNING  | process 14739 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 13:31:10] 2026-01-26 18:30:07,169 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6983014527/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:31:10] 2026-01-26 18:30:07,257 | INFO     | number of running child processes to parent process 14739: 1
[2026-01-26 13:31:10] 2026-01-26 18:30:07,257 | INFO     | maximum number of monitored processes: 6
[2026-01-26 13:31:10] 2026-01-26 18:30:07,782 | INFO     | time since job start (4630s) is within the limit (349056.0s)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,054 | INFO     | job 6983014527 has state=finished
[2026-01-26 13:31:10] 2026-01-26 18:30:08,055 | INFO     | preparing for final server update for job 6983014527 in state='finished'
[2026-01-26 13:31:10] 2026-01-26 18:30:08,055 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6983014527/jobReport.json
[2026-01-26 13:31:10] 2026-01-26 18:30:08,057 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-26 13:31:10] 2026-01-26 18:30:08,058 | INFO     | this job has now completed (state=finished)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,058 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,058 | INFO     | log transfer has been attempted: DONE
[2026-01-26 13:31:10] 2026-01-26 18:30:08,058 | INFO     | job 6983014527 has finished - writing final server update
[2026-01-26 13:31:10] 2026-01-26 18:30:08,059 | INFO     | total number of processed events: 400 (read)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,062 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6983014527/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,062 | INFO     | extracted standard info from prmon json
[2026-01-26 13:31:10] 2026-01-26 18:30:08,062 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 13:31:10] 2026-01-26 18:30:08,063 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 13:31:10] 2026-01-26 18:30:08,063 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 13:31:10] 2026-01-26 18:30:08,063 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 13:31:10] 2026-01-26 18:30:08,065 | INFO     | fitting pss+swap vs Time
[2026-01-26 13:31:10] 2026-01-26 18:30:08,065 | INFO     | sum of square deviations: 101843770.0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,065 | INFO     | sum of deviations: 1925891268.0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,065 | INFO     | mean x: 1769449980.0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,065 | INFO     | mean y: 2705358.2463768115
[2026-01-26 13:31:10] 2026-01-26 18:30:08,066 | INFO     | intersect: -33458038147.66247
[2026-01-26 13:31:10] 2026-01-26 18:30:08,066 | INFO     | chi2: 0.05162887280508534
[2026-01-26 13:31:10] 2026-01-26 18:30:08,066 | INFO     | current memory leak: 18.91 B/s (using 69 data points, chi2=0.05)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,066 | INFO     | could have reported an average CPU frequency of 1706 MHz (6 samples)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,066 | INFO     | ..............................
[2026-01-26 13:31:10] 2026-01-26 18:30:08,066 | INFO     | . Timing measurements:
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . get job = 0 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . initial setup = 1 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . payload setup = 7 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . stage-in = 0 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . payload execution = 4606 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . stage-out = 0 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | . log creation = 0 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,067 | INFO     | ..............................
[2026-01-26 13:31:10] 2026-01-26 18:30:08,557 | INFO     | 
[2026-01-26 13:31:10] 2026-01-26 18:30:08,557 | INFO     | job summary report
[2026-01-26 13:31:10] 2026-01-26 18:30:08,557 | INFO     | --------------------------------------------------
[2026-01-26 13:31:10] 2026-01-26 18:30:08,558 | INFO     | PanDA job id: 6983014527
[2026-01-26 13:31:10] 2026-01-26 18:30:08,558 | INFO     | task id: 48317931
[2026-01-26 13:31:10] 2026-01-26 18:30:08,558 | INFO     | errors: (none)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,558 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 13:31:10] 2026-01-26 18:30:08,558 | INFO     | pilot state: finished 
[2026-01-26 13:31:10] 2026-01-26 18:30:08,558 | INFO     | transexitcode: 0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,559 | INFO     | exeerrorcode: 0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,559 | INFO     | exeerrordiag: 
[2026-01-26 13:31:10] 2026-01-26 18:30:08,559 | INFO     | exitcode: 0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,559 | INFO     | exitmsg: OK
[2026-01-26 13:31:10] 2026-01-26 18:30:08,559 | INFO     | cpuconsumptiontime: 49456 s
[2026-01-26 13:31:10] 2026-01-26 18:30:08,559 | INFO     | nevents: 400
[2026-01-26 13:31:10] 2026-01-26 18:30:08,560 | INFO     | neventsw: 0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,560 | INFO     | pid: 14739
[2026-01-26 13:31:10] 2026-01-26 18:30:08,560 | INFO     | pgrp: 14739
[2026-01-26 13:31:10] 2026-01-26 18:30:08,560 | INFO     | corecount: 12
[2026-01-26 13:31:10] 2026-01-26 18:30:08,560 | INFO     | event service: False
[2026-01-26 13:31:10] 2026-01-26 18:30:08,560 | INFO     | sizes: {0: 2283737, 1: 2284198, 12: 2284198, 4617: 2310352, 4618: 2319406, 4619: 2319544}
[2026-01-26 13:31:10] 2026-01-26 18:30:08,561 | INFO     | --------------------------------------------------
[2026-01-26 13:31:10] 2026-01-26 18:30:08,561 | INFO     | 
[2026-01-26 13:31:10] 2026-01-26 18:30:08,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-26 13:31:10] 2026-01-26 18:30:08,584 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,585 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,585 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,585 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,586 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,586 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,587 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,587 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,587 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,587 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,587 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,587 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,588 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,588 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 13:31:10] 2026-01-26 18:30:08,588 | INFO     | job 6983014527 has completed (purged errors)
[2026-01-26 13:31:10] 2026-01-26 18:30:08,588 | INFO     | overall cleanup function is called
[2026-01-26 13:31:10] 2026-01-26 18:30:09,596 | INFO     | --- collectZombieJob: --- 10, [14739]
[2026-01-26 13:31:10] 2026-01-26 18:30:09,597 | INFO     | zombie collector waiting for pid 14739
[2026-01-26 13:31:10] 2026-01-26 18:30:09,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 13:31:10] 2026-01-26 18:30:09,597 | INFO     | collected zombie processes
[2026-01-26 13:31:10] 2026-01-26 18:30:09,597 | INFO     | will attempt to kill all subprocesses of pid=14739
[2026-01-26 13:31:10] 2026-01-26 18:30:09,688 | INFO     | process IDs to be killed: [14739] (in reverse order)
[2026-01-26 13:31:10] 2026-01-26 18:30:09,741 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 13:31:10] 2026-01-26 18:30:09,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 13:31:10] 2026-01-26 18:30:09,744 | INFO     | did not find any defunct processes belonging to 14739
[2026-01-26 13:31:10] 2026-01-26 18:30:09,746 | INFO     | did not find any defunct processes belonging to 14739
[2026-01-26 13:31:10] 2026-01-26 18:30:09,747 | INFO     | ready for new job
[2026-01-26 13:31:10] 2026-01-26 18:30:09,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 13:31:10] 2026-01-26 18:30:09,748 | INFO     | **************************************
[2026-01-26 13:31:10] 2026-01-26 18:30:09,748 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 13:31:10] 2026-01-26 18:30:09,748 | INFO     | **************************************
[2026-01-26 13:31:10] 2026-01-26 18:30:09,748 | INFO     | 
[2026-01-26 13:31:10] 2026-01-26 18:30:09,749 | INFO     | architecture information:
[2026-01-26 13:31:10] 2026-01-26 18:30:09,749 | INFO     | executing command: cat /etc/os-release
[2026-01-26 13:31:10] 2026-01-26 18:30:09,763 | INFO     | cat /etc/os-release:
[2026-01-26 13:31:10] NAME="CentOS Linux"
[2026-01-26 13:31:10] VERSION="7 (Core)"
[2026-01-26 13:31:10] ID="centos"
[2026-01-26 13:31:10] ID_LIKE="rhel fedora"
[2026-01-26 13:31:10] VERSION_ID="7"
[2026-01-26 13:31:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 13:31:10] ANSI_COLOR="0;31"
[2026-01-26 13:31:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 13:31:10] HOME_URL="https://www.centos.org/"
[2026-01-26 13:31:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 13:31:10] 
[2026-01-26 13:31:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 13:31:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 13:31:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 13:31:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 13:31:10] 
[2026-01-26 13:31:10] 2026-01-26 18:30:09,764 | INFO     | **************************************
[2026-01-26 13:31:10] 2026-01-26 18:30:10,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-26 13:31:10] 2026-01-26 18:30:10,282 | INFO     | sufficient remaining disk space (28793896960 B)
[2026-01-26 13:31:10] 2026-01-26 18:30:10,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 13:31:10] 2026-01-26 18:30:10,282 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 13:31:10] 2026-01-26 18:30:10,283 | INFO     | update_server=False
[2026-01-26 13:31:10] 2026-01-26 18:30:10,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 13:31:10] 2026-01-26 18:30:10,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 13:31:10] 2026-01-26 18:30:10,284 | INFO     | all data control threads have been joined
[2026-01-26 13:31:10] 2026-01-26 18:30:10,555 | INFO     | all job control threads have been joined
[2026-01-26 13:31:10] 2026-01-26 18:30:10,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:31:10] 2026-01-26 18:30:10,764 | INFO     | aborting loop
[2026-01-26 13:31:10] 2026-01-26 18:30:11,288 | INFO     | [job] retrieve thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,289 | INFO     | [data] control thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,373 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,389 | INFO     | [payload] failed_post thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,395 | INFO     | all payload control threads have been joined
[2026-01-26 13:31:10] 2026-01-26 18:30:11,561 | INFO     | [job] control thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,766 | INFO     | [job] job monitor thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,793 | INFO     | [data] copytool_in thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:11,970 | INFO     | [payload] validate_post thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:12,289 | INFO     | [data] copytool_out thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:12,400 | INFO     | [payload] control thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:12,698 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:12,716 | INFO     | [job] validate thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:12,722 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:13,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 13:31:10] 2026-01-26 18:30:13,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:31:10] 2026-01-26 18:30:14,158 | INFO     | [job] queue monitor thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:17,093 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:20,853 | INFO     | job.realtimelogging is not enabled
[2026-01-26 13:31:10] 2026-01-26 18:30:21,858 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 13:31:10] 2026-01-26 18:30:40,984 | INFO     | PID=12313 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 13:31:10] 2026-01-26 18:30:40,984 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 13:31:10] 2026-01-26 18:30:40,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 13:31:10] 2026-01-26 18:30:40,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 13:31:10] 2026-01-26 18:31:03,705 | INFO     | [monitor] cgroup control has ended
[2026-01-26 13:31:10] 2026-01-26 18:31:05,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775398885184)>', '<ExcThread(monitor, started 139774643910400)>']
[2026-01-26 13:31:10] 2026-01-26 18:31:06,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 13:31:10] 2026-01-26 18:31:06,085 | INFO     | [monitor] control thread has ended
[2026-01-26 13:31:10] 2026-01-26 18:31:10,386 | INFO     | all workflow threads have been joined
[2026-01-26 13:31:10] 2026-01-26 18:31:10,386 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 13:31:10] 2026-01-26 18:31:10,386 | INFO     | traces error code: 0
[2026-01-26 13:31:10] 2026-01-26 18:31:10,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 13:31:10] 2026-01-26 18:31:10,470 [wrapper] ==== pilot stdout END ====
[2026-01-26 13:31:10] 2026-01-26 18:31:10,474 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 13:31:10] 2026-01-26 18:31:10,478 [wrapper] pilotpid: 12313
[2026-01-26 13:31:10] 2026-01-26 18:31:10,482 [wrapper] Pilot exit status: 0
[2026-01-26 13:31:10] 2026-01-26 18:31:10,497 [wrapper] pandaids: 6983014527 6983014527
[2026-01-26 13:31:10] 2026-01-26 18:31:10,545 [wrapper] cleanup supervisor_pilot  4496 12314
[2026-01-26 13:31:10] 2026-01-26 18:31:10,550 [wrapper] Test setup, not cleaning
[2026-01-26 13:31:10] 2026-01-26 18:31:10,554 [wrapper] apfmon messages muted
[2026-01-26 13:31:10] 2026-01-26 18:31:10,557 [wrapper] ==== wrapper stdout END ====
[2026-01-26 13:31:10] 2026-01-26 18:31:10,561 [wrapper] ==== wrapper stderr END ====
[2026-01-26 13:31:10]  *** Error codes and diagnostics ***
[2026-01-26 13:31:10]     "exeErrorCode": 0,
[2026-01-26 13:31:10]     "exeErrorDiag": "",
[2026-01-26 13:31:10]     "pilotErrorCode": 0,
[2026-01-26 13:31:10]     "pilotErrorDiag": "",
[2026-01-26 13:31:10]  *** Listing of results directory ***
[2026-01-26 13:31:10] total 1161752
[2026-01-26 13:31:10] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas      5111 Jan 25 09:11 queuedata.json
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas    584422 Jan 25 09:11 pilot3.tar.gz
[2026-01-26 13:31:10] -rwx------ 1 boincer umatlas     36322 Jan 25 09:11 runpilot2-wrapper.sh
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas       100 Jan 26 11:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 13:31:10] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 11:51 run_atlas
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas       105 Jan 26 11:51 job.xml
[2026-01-26 13:31:10] -rw-r--r-- 3 boincer umatlas 498119121 Jan 26 11:51 EVNT.48317929._000011.pool.root.1
[2026-01-26 13:31:10] -rw-r--r-- 3 boincer umatlas 498119121 Jan 26 11:51 ATLAS.root_0
[2026-01-26 13:31:10] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 11:51 start_atlas.sh
[2026-01-26 13:31:10] drwxrwx--x 2 boincer umatlas      4096 Jan 26 11:51 shared
[2026-01-26 13:31:10] -rw-r--r-- 2 boincer umatlas    597750 Jan 26 11:51 input.tar.gz
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas         0 Jan 26 11:51 boinc_lockfile
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas   1516246 Jan 26 11:51 agis_ddmendpoints.agis.ALL.json
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas      2505 Jan 26 12:12 pandaJob.out
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas        57 Jan 26 12:12 setup.sh.local
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas   1006276 Jan 26 12:12 agis_schedconf.cvmfs.json
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas       445 Jan 26 12:12 workernode_map.json
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas      5953 Jan 26 13:27 init_data.xml
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas 187314856 Jan 26 13:29 HITS.48317931._000535.pool.root.1
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas       531 Jan 26 13:29 boinc_task_state.xml
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas        96 Jan 26 13:29 pilot_heartbeat.json
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas      1043 Jan 26 13:30 memory_monitor_summary.json
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas    396920 Jan 26 13:30 log.48317931._000535.job.log.tgz.1
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas      6410 Jan 26 13:30 heartbeat.json
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas        27 Jan 26 13:30 wrapper_checkpoint.txt
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 13:30 boinc_mmap_file
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas      4814 Jan 26 13:31 pilotlog.txt
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas    671735 Jan 26 13:31 log.48317931._000535.job.log.1
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas       357 Jan 26 13:31 output.list
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas       620 Jan 26 13:31 runtime_log
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas   1085440 Jan 26 13:31 result.tar.gz
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas      9428 Jan 26 13:31 runtime_log.err
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas       784 Jan 26 13:31 lDdMDmo0F48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtc7KDmRvcbRo.diag
[2026-01-26 13:31:10] -rw-r--r-- 1 boincer umatlas     23438 Jan 26 13:31 stderr.txt
[2026-01-26 13:31:10] HITS file was successfully produced:
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas 187314856 Jan 26 13:29 shared/HITS.pool.root.1
[2026-01-26 13:31:10]  *** Contents of shared directory: ***
[2026-01-26 13:31:10] total 671040
[2026-01-26 13:31:10] -rw-r--r-- 3 boincer umatlas 498119121 Jan 26 11:51 ATLAS.root_0
[2026-01-26 13:31:10] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 11:51 start_atlas.sh
[2026-01-26 13:31:10] -rw-r--r-- 2 boincer umatlas    597750 Jan 26 11:51 input.tar.gz
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas 187314856 Jan 26 13:29 HITS.pool.root.1
[2026-01-26 13:31:10] -rw------- 1 boincer umatlas   1085440 Jan 26 13:31 result.tar.gz
13:31:11 (8237): run_atlas exited; CPU time 49432.671849
13:31:11 (8237): called boinc_finish(0)

</stderr_txt>
]]>

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