Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:19:10 (1370189): wrapper (7.7.26015): starting
07:19:10 (1370189): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 07:19:10] Arguments: --nthreads 4
[2026-01-27 07:19:10] Threads: 4
[2026-01-27 07:19:10] Checking for CVMFS
[2026-01-27 07:19:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 07:19:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 07:19:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 07:19:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 07:19:10] 2.9.2.0 3097 7018 96728 155575 1 49 24705294 36864000 0 130560 0 3865489 99.988 253240 6132 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 07:19:10] CVMFS is ok
[2026-01-27 07:19:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 07:19:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 07:19:10] Further information can be found at the LHC@home message board.
[2026-01-27 07:19:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 07:19:10] Checking for apptainer binary...
[2026-01-27 07:19:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 07:19:10] Running /usr/bin/apptainer --version
[2026-01-27 07:19:10] apptainer version 1.4.1-1.1
[2026-01-27 07:19:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 07:19:10] thA338
[2026-01-27 07:19:10] apptainer works
[2026-01-27 07:19:10] Set ATHENA_PROC_NUMBER=4
[2026-01-27 07:19:10] Set ATHENA_CORE_NUMBER=4
[2026-01-27 07:19:10] Starting ATLAS job with PandaID=6983344932
[2026-01-27 07:19:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:33:04]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:33:04] 2026-01-27 07:32:32,964 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 08:33:04] 2026-01-27 07:32:33,002 | INFO     | number of running child processes to parent process 1378799: 1
[2026-01-27 08:33:04] 2026-01-27 07:32:33,002 | INFO     | maximum number of monitored processes: 6
[2026-01-27 08:33:04] 2026-01-27 07:32:33,002 | INFO     | aborting job monitoring since job object (job id=6983344932) has expired
[2026-01-27 08:33:04] 2026-01-27 07:32:33,753 | INFO     | --- collectZombieJob: --- 10, [1378799]
[2026-01-27 08:33:04] 2026-01-27 07:32:33,753 | INFO     | zombie collector waiting for pid 1378799
[2026-01-27 08:33:04] 2026-01-27 07:32:33,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:33:04] 2026-01-27 07:32:33,753 | INFO     | collected zombie processes
[2026-01-27 08:33:04] 2026-01-27 07:32:33,753 | INFO     | will attempt to kill all subprocesses of pid=1378799
[2026-01-27 08:33:04] 2026-01-27 07:32:33,794 | INFO     | process IDs to be killed: [1378799] (in reverse order)
[2026-01-27 08:33:04] 2026-01-27 07:32:33,827 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:33:04] 2026-01-27 07:32:33,827 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:33:04] 2026-01-27 07:32:33,829 | INFO     | did not find any defunct processes belonging to 1378799
[2026-01-27 08:33:04] 2026-01-27 07:32:33,830 | INFO     | did not find any defunct processes belonging to 1378799
[2026-01-27 08:33:04] 2026-01-27 07:32:33,830 | INFO     | ready for new job
[2026-01-27 08:33:04] 2026-01-27 07:32:33,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:33:04] 2026-01-27 07:32:33,831 | INFO     | **************************************
[2026-01-27 08:33:04] 2026-01-27 07:32:33,831 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:33:04] 2026-01-27 07:32:33,831 | INFO     | **************************************
[2026-01-27 08:33:04] 2026-01-27 07:32:33,831 | INFO     | 
[2026-01-27 08:33:04] 2026-01-27 07:32:33,831 | INFO     | architecture information:
[2026-01-27 08:33:04] 2026-01-27 07:32:33,831 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:33:04] 2026-01-27 07:32:33,846 | INFO     | cat /etc/os-release:
[2026-01-27 08:33:04] NAME="CentOS Linux"
[2026-01-27 08:33:04] VERSION="7 (Core)"
[2026-01-27 08:33:04] ID="centos"
[2026-01-27 08:33:04] ID_LIKE="rhel fedora"
[2026-01-27 08:33:04] VERSION_ID="7"
[2026-01-27 08:33:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:33:04] ANSI_COLOR="0;31"
[2026-01-27 08:33:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:33:04] HOME_URL="https://www.centos.org/"
[2026-01-27 08:33:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:33:04] 
[2026-01-27 08:33:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:33:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:33:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:33:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:33:04] 
[2026-01-27 08:33:04] 2026-01-27 07:32:33,846 | INFO     | **************************************
[2026-01-27 08:33:04] 2026-01-27 07:32:34,349 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 08:33:04] 2026-01-27 07:32:34,367 | INFO     | sufficient remaining disk space (231805550592 B)
[2026-01-27 08:33:04] 2026-01-27 07:32:34,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:33:04] 2026-01-27 07:32:34,367 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:33:04] 2026-01-27 07:32:34,367 | INFO     | update_server=False
[2026-01-27 08:33:04] 2026-01-27 07:32:34,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:33:04] 2026-01-27 07:32:34,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:33:04] 2026-01-27 07:32:34,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:33:04] 2026-01-27 07:32:34,368 | INFO     | aborting loop
[2026-01-27 08:33:04] 2026-01-27 07:32:34,645 | INFO     | all data control threads have been joined
[2026-01-27 08:33:04] 2026-01-27 07:32:35,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:33:04] 2026-01-27 07:32:35,369 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:35,373 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:35,374 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:35,477 | INFO     | all payload control threads have been joined
[2026-01-27 08:33:04] 2026-01-27 07:32:35,651 | INFO     | [data] control thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:35,736 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:35,935 | INFO     | [job] validate thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:36,011 | INFO     | all job control threads have been joined
[2026-01-27 08:33:04] 2026-01-27 07:32:36,025 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:36,052 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:36,160 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:36,260 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:36,483 | INFO     | [payload] control thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:36,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:33:04] 2026-01-27 07:32:36,679 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:37,017 | INFO     | [job] control thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:37,160 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:40,503 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:44,964 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:33:04] 2026-01-27 07:32:45,172 | INFO     | job.realtimelogging is not enabled
[2026-01-27 08:33:04] 2026-01-27 07:32:46,178 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:33:04] 2026-01-27 07:32:46,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837690279744)>', '<ExcThread(monitor, started 139836526675712)>']
[2026-01-27 08:33:04] 2026-01-27 07:32:51,462 | INFO     | all workflow threads have been joined
[2026-01-27 08:33:04] 2026-01-27 07:32:51,463 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:33:04] 2026-01-27 07:32:51,463 | INFO     | traces error code: 0
[2026-01-27 08:33:04] 2026-01-27 07:32:51,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:33:04] 2026-01-27 07:33:04,704 | INFO     | PID=1374291 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 08:33:04] 2026-01-27 07:33:04,704 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:33:04] 2026-01-27 07:33:04,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:33:04] 2026-01-27 07:33:04,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:33:04] 2026-01-27 07:33:04,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:33:04] 2026-01-27 07:33:04,704 | INFO     | [monitor] control thread has ended
[2026-01-27 08:33:04] 2026-01-27 07:33:04,782 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:33:04] 2026-01-27 07:33:04,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:33:04] 2026-01-27 07:33:04,790 [wrapper] pilotpid: 1374291
[2026-01-27 08:33:04] 2026-01-27 07:33:04,794 [wrapper] Pilot exit status: 0
[2026-01-27 08:33:04] 2026-01-27 07:33:04,806 [wrapper] pandaids: 6983344932
[2026-01-27 08:33:04] 2026-01-27 07:33:04,827 [wrapper] cleanup supervisor_pilot 1383958 1374292
[2026-01-27 08:33:04] 2026-01-27 07:33:04,832 [wrapper] Test setup, not cleaning
[2026-01-27 08:33:04] 2026-01-27 07:33:04,836 [wrapper] apfmon messages muted
[2026-01-27 08:33:04] 2026-01-27 07:33:04,840 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:33:04] 2026-01-27 07:33:04,844 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:33:04]  *** Error codes and diagnostics ***
[2026-01-27 08:33:04]     "exeErrorCode": 0,
[2026-01-27 08:33:04]     "exeErrorDiag": "",
[2026-01-27 08:33:04]     "pilotErrorCode": 0,
[2026-01-27 08:33:04]     "pilotErrorDiag": "",
[2026-01-27 08:33:04]  *** Listing of results directory ***
[2026-01-27 08:33:04] total 673404
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc      5111 Jan 25 21:48 queuedata.json
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-27 08:33:04] -rwx------ 1 boinc boinc     36322 Jan 25 21:48 runpilot2-wrapper.sh
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc       100 Jan 27 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:33:04] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 07:19 run_atlas
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc       105 Jan 27 07:19 job.xml
[2026-01-27 08:33:04] -rw-r--r-- 2 boinc boinc 502733713 Jan 27 07:19 EVNT.48317869._000023.pool.root.1
[2026-01-27 08:33:04] -rw-r--r-- 2 boinc boinc    597751 Jan 27 07:19 input.tar.gz
[2026-01-27 08:33:04] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:19 start_atlas.sh
[2026-01-27 08:33:04] drwxrwx--x 2 boinc boinc      4096 Jan 27 07:19 shared
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:19 boinc_setup_complete
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc      6376 Jan 27 07:19 init_data.xml
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:19 boinc_lockfile
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc      2514 Jan 27 07:19 pandaJob.out
[2026-01-27 08:33:04] -rw------- 1 boinc boinc   1004335 Jan 27 07:19 agis_schedconf.cvmfs.json
[2026-01-27 08:33:04] -rw------- 1 boinc boinc   1516246 Jan 27 07:19 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:33:04] -rw------- 1 boinc boinc       417 Jan 27 07:19 workernode_map.json
[2026-01-27 08:33:04] drwx------ 5 boinc boinc      4096 Jan 27 07:19 pilot3
[2026-01-27 08:33:04] -rw------- 1 boinc boinc 181023420 Jan 27 08:32 HITS.48317872._001151.pool.root.1
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc       530 Jan 27 08:32 boinc_task_state.xml
[2026-01-27 08:33:04] -rw------- 1 boinc boinc      1020 Jan 27 08:32 memory_monitor_summary.json
[2026-01-27 08:33:04] -rw------- 1 boinc boinc    294623 Jan 27 08:32 log.48317872._001151.job.log.tgz.1
[2026-01-27 08:33:04] -rw------- 1 boinc boinc      6302 Jan 27 08:32 heartbeat.json
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc      8192 Jan 27 08:32 boinc_mmap_file
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc        27 Jan 27 08:32 wrapper_checkpoint.txt
[2026-01-27 08:33:04] -rw------- 1 boinc boinc       747 Jan 27 08:33 pilotlog.txt
[2026-01-27 08:33:04] -rw------- 1 boinc boinc        95 Jan 27 08:33 pilot_heartbeat.json
[2026-01-27 08:33:04] -rw------- 1 boinc boinc    646945 Jan 27 08:33 log.48317872._001151.job.log.1
[2026-01-27 08:33:04] -rw------- 1 boinc boinc       357 Jan 27 08:33 output.list
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc       620 Jan 27 08:33 runtime_log
[2026-01-27 08:33:04] -rw------- 1 boinc boinc    962560 Jan 27 08:33 result.tar.gz
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc      8896 Jan 27 08:33 runtime_log.err
[2026-01-27 08:33:04] -rw------- 1 boinc boinc       657 Jan 27 08:33 pS6MDmfDM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2j1KDm2wyTJn.diag
[2026-01-27 08:33:04] -rw-r--r-- 1 boinc boinc     11197 Jan 27 08:33 stderr.txt
[2026-01-27 08:33:04] HITS file was successfully produced:
[2026-01-27 08:33:04] -rw------- 1 boinc boinc 181023420 Jan 27 08:32 shared/HITS.pool.root.1
[2026-01-27 08:33:04]  *** Contents of shared directory: ***
[2026-01-27 08:33:04] total 669284
[2026-01-27 08:33:04] -rw-r--r-- 2 boinc boinc 502733713 Jan 27 07:19 ATLAS.root_0
[2026-01-27 08:33:04] -rw-r--r-- 2 boinc boinc    597751 Jan 27 07:19 input.tar.gz
[2026-01-27 08:33:04] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:19 start_atlas.sh
[2026-01-27 08:33:04] -rw------- 1 boinc boinc 181023420 Jan 27 08:32 HITS.pool.root.1
[2026-01-27 08:33:04] -rw------- 1 boinc boinc    962560 Jan 27 08:33 result.tar.gz
08:33:06 (1370189): run_atlas exited; CPU time 16467.852202
08:33:06 (1370189): called boinc_finish(0)

</stderr_txt>
]]>

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