Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:41 (1513350): wrapper (7.7.26015): starting
03:59:41 (1513350): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 03:59:41] Arguments: --nthreads 3
[2026-01-27 03:59:41] Threads: 3
[2026-01-27 03:59:41] Checking for CVMFS
[2026-01-27 03:59:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 03:59:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 03:59:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 03:59:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 03:59:42] 2.9.2.0 2182370 9161 90720 155569 0 50 26506231 36864001 0 130560 0 4109636 99.986 294339 6392 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 03:59:42] CVMFS is ok
[2026-01-27 03:59:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 03:59:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 03:59:42] Further information can be found at the LHC@home message board.
[2026-01-27 03:59:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 03:59:42] Checking for apptainer binary...
[2026-01-27 03:59:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 03:59:42] Running /usr/bin/apptainer --version
[2026-01-27 03:59:42] apptainer version 1.4.1-1.1
[2026-01-27 03:59:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 03:59:42] atlasA303
[2026-01-27 03:59:42] apptainer works
[2026-01-27 03:59:42] Set ATHENA_PROC_NUMBER=3
[2026-01-27 03:59:42] Set ATHENA_CORE_NUMBER=3
[2026-01-27 03:59:42] Starting ATLAS job with PandaID=6983602579
[2026-01-27 03:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 05:39:02]  *** The last 200 lines of the pilot log: ***
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | job 6983602579 has completed (purged errors)
[2026-01-27 05:39:02] 2026-01-27 04:38:25,568 | INFO     | overall cleanup function is called
[2026-01-27 05:39:02] 2026-01-27 04:38:26,574 | INFO     | --- collectZombieJob: --- 10, [1521931]
[2026-01-27 05:39:02] 2026-01-27 04:38:26,574 | INFO     | zombie collector waiting for pid 1521931
[2026-01-27 05:39:02] 2026-01-27 04:38:26,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 05:39:02] 2026-01-27 04:38:26,575 | INFO     | collected zombie processes
[2026-01-27 05:39:02] 2026-01-27 04:38:26,575 | INFO     | will attempt to kill all subprocesses of pid=1521931
[2026-01-27 05:39:02] 2026-01-27 04:38:26,616 | INFO     | process IDs to be killed: [1521931] (in reverse order)
[2026-01-27 05:39:02] 2026-01-27 04:38:26,640 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 05:39:02] 2026-01-27 04:38:26,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 05:39:02] 2026-01-27 04:38:26,642 | INFO     | did not find any defunct processes belonging to 1521931
[2026-01-27 05:39:02] 2026-01-27 04:38:26,643 | INFO     | did not find any defunct processes belonging to 1521931
[2026-01-27 05:39:02] 2026-01-27 04:38:26,643 | INFO     | ready for new job
[2026-01-27 05:39:02] 2026-01-27 04:38:26,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 05:39:02] 2026-01-27 04:38:26,644 | INFO     | **************************************
[2026-01-27 05:39:02] 2026-01-27 04:38:26,644 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 05:39:02] 2026-01-27 04:38:26,644 | INFO     | **************************************
[2026-01-27 05:39:02] 2026-01-27 04:38:26,644 | INFO     | 
[2026-01-27 05:39:02] 2026-01-27 04:38:26,644 | INFO     | architecture information:
[2026-01-27 05:39:02] 2026-01-27 04:38:26,644 | INFO     | executing command: cat /etc/os-release
[2026-01-27 05:39:02] 2026-01-27 04:38:26,653 | INFO     | cat /etc/os-release:
[2026-01-27 05:39:02] NAME="CentOS Linux"
[2026-01-27 05:39:02] VERSION="7 (Core)"
[2026-01-27 05:39:02] ID="centos"
[2026-01-27 05:39:02] ID_LIKE="rhel fedora"
[2026-01-27 05:39:02] VERSION_ID="7"
[2026-01-27 05:39:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 05:39:02] ANSI_COLOR="0;31"
[2026-01-27 05:39:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 05:39:02] HOME_URL="https://www.centos.org/"
[2026-01-27 05:39:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 05:39:02] 
[2026-01-27 05:39:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 05:39:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 05:39:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 05:39:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 05:39:02] 
[2026-01-27 05:39:02] 2026-01-27 04:38:26,653 | INFO     | **************************************
[2026-01-27 05:39:02] 2026-01-27 04:38:27,154 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | INFO     | sufficient remaining disk space (376186077184 B)
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | INFO     | update_server=False
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | INFO     | aborting loop
[2026-01-27 05:39:02] 2026-01-27 04:38:27,167 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 05:39:02] 2026-01-27 04:38:27,168 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 05:39:02] 2026-01-27 04:38:27,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 05:39:02] 2026-01-27 04:38:27,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 05:39:02] 2026-01-27 04:38:27,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 05:39:02] 2026-01-27 04:38:27,168 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 05:39:02] 2026-01-27 04:38:27,168 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:39:02] 2026-01-27 04:38:27,422 | INFO     | job.realtimelogging is not enabled
[2026-01-27 05:39:02] 2026-01-27 04:38:27,919 | INFO     | all data control threads have been joined
[2026-01-27 05:39:02] 2026-01-27 04:38:27,929 | INFO     | all payload control threads have been joined
[2026-01-27 05:39:02] 2026-01-27 04:38:27,942 | INFO     | all job control threads have been joined
[2026-01-27 05:39:02] 2026-01-27 04:38:28,173 | INFO     | [job] job monitor thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,173 | INFO     | [job] retrieve thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,173 | INFO     | [job] queue monitor thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,209 | INFO     | [data] copytool_in thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,428 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,485 | INFO     | [payload] validate_post thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,759 | INFO     | [payload] failed_post thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,925 | INFO     | [data] control thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,935 | INFO     | [payload] control thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:28,948 | INFO     | [job] control thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:29,174 | INFO     | [data] copytool_out thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:29,453 | INFO     | [job] validate thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:29,551 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:29,636 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:29,653 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:31,175 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 05:39:02] 2026-01-27 04:38:56,990 | INFO     | [monitor] cgroup control has ended
[2026-01-27 05:39:02] 2026-01-27 04:38:57,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038636984128)>', '<ExcThread(monitor, started 140038364219136)>']
[2026-01-27 05:39:02] 2026-01-27 04:38:58,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 05:39:02] 2026-01-27 04:38:58,328 | INFO     | [monitor] control thread has ended
[2026-01-27 05:39:02] 2026-01-27 04:39:02,782 | INFO     | all workflow threads have been joined
[2026-01-27 05:39:02] 2026-01-27 04:39:02,782 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 05:39:02] 2026-01-27 04:39:02,783 | INFO     | traces error code: 0
[2026-01-27 05:39:02] 2026-01-27 04:39:02,783 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 05:39:02] 2026-01-27 04:39:02,833 [wrapper] ==== pilot stdout END ====
[2026-01-27 05:39:02] 2026-01-27 04:39:02,835 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 05:39:02] 2026-01-27 04:39:02,838 [wrapper] pilotpid: 1517420
[2026-01-27 05:39:02] 2026-01-27 04:39:02,840 [wrapper] Pilot exit status: 0
[2026-01-27 05:39:02] 2026-01-27 04:39:02,847 [wrapper] pandaids: 6983602579
[2026-01-27 05:39:02] 2026-01-27 04:39:02,863 [wrapper] cleanup supervisor_pilot 1547708 1517421
[2026-01-27 05:39:02] 2026-01-27 04:39:02,865 [wrapper] Test setup, not cleaning
[2026-01-27 05:39:02] 2026-01-27 04:39:02,867 [wrapper] apfmon messages muted
[2026-01-27 05:39:02] 2026-01-27 04:39:02,870 [wrapper] ==== wrapper stdout END ====
[2026-01-27 05:39:02] 2026-01-27 04:39:02,872 [wrapper] ==== wrapper stderr END ====
[2026-01-27 05:39:02]  *** Error codes and diagnostics ***
[2026-01-27 05:39:02]     "exeErrorCode": 0,
[2026-01-27 05:39:02]     "exeErrorDiag": "",
[2026-01-27 05:39:02]     "pilotErrorCode": 0,
[2026-01-27 05:39:02]     "pilotErrorDiag": "",
[2026-01-27 05:39:02]  *** Listing of results directory ***
[2026-01-27 05:39:02] total 413248
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 05:39:02] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc       100 Jan 27 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 05:39:02] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 03:59 run_atlas
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc       105 Jan 27 03:59 job.xml
[2026-01-27 05:39:02] -rw-r--r-- 2 boinc boinc 248955956 Jan 27 03:59 EVNT.48330019._000003.pool.root.1
[2026-01-27 05:39:02] -rw-r--r-- 2 boinc boinc    597783 Jan 27 03:59 input.tar.gz
[2026-01-27 05:39:02] -rw-r--r-- 2 boinc boinc     15845 Jan 27 03:59 start_atlas.sh
[2026-01-27 05:39:02] drwxrwx--x 2 boinc boinc      4096 Jan 27 03:59 shared
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc         0 Jan 27 03:59 boinc_setup_complete
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc      6447 Jan 27 03:59 init_data.xml
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc         0 Jan 27 03:59 boinc_lockfile
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc      2630 Jan 27 03:59 pandaJob.out
[2026-01-27 05:39:02] -rw------- 1 boinc boinc   1006425 Jan 27 03:59 agis_schedconf.cvmfs.json
[2026-01-27 05:39:02] -rw------- 1 boinc boinc   1516246 Jan 27 03:59 agis_ddmendpoints.agis.ALL.json
[2026-01-27 05:39:02] -rw------- 1 boinc boinc       425 Jan 27 03:59 workernode_map.json
[2026-01-27 05:39:02] drwx------ 5 boinc boinc      4096 Jan 27 03:59 pilot3
[2026-01-27 05:39:02] -rw------- 1 boinc boinc 168040366 Jan 27 05:38 HITS.48330021._000105.pool.root.1
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc       529 Jan 27 05:38 boinc_task_state.xml
[2026-01-27 05:39:02] -rw------- 1 boinc boinc        95 Jan 27 05:38 pilot_heartbeat.json
[2026-01-27 05:39:02] -rw------- 1 boinc boinc      1018 Jan 27 05:38 memory_monitor_summary.json
[2026-01-27 05:39:02] -rw------- 1 boinc boinc    257910 Jan 27 05:38 log.48330021._000105.job.log.tgz.1
[2026-01-27 05:39:02] -rw------- 1 boinc boinc      6296 Jan 27 05:38 heartbeat.json
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc      8192 Jan 27 05:38 boinc_mmap_file
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc        27 Jan 27 05:38 wrapper_checkpoint.txt
[2026-01-27 05:39:02] -rw------- 1 boinc boinc      4624 Jan 27 05:39 pilotlog.txt
[2026-01-27 05:39:02] -rw------- 1 boinc boinc    858229 Jan 27 05:39 log.48330021._000105.job.log.1
[2026-01-27 05:39:02] -rw------- 1 boinc boinc       357 Jan 27 05:39 output.list
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc       620 Jan 27 05:39 runtime_log
[2026-01-27 05:39:02] -rw------- 1 boinc boinc   1136640 Jan 27 05:39 result.tar.gz
[2026-01-27 05:39:02] -rw------- 1 boinc boinc       660 Jan 27 05:39 PtyNDmYNQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYq8KDmnZvGJn.diag
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc      8911 Jan 27 05:39 runtime_log.err
[2026-01-27 05:39:02] -rw-r--r-- 1 boinc boinc     12754 Jan 27 05:39 stderr.txt
[2026-01-27 05:39:02] HITS file was successfully produced:
[2026-01-27 05:39:02] -rw------- 1 boinc boinc 168040366 Jan 27 05:38 shared/HITS.pool.root.1
[2026-01-27 05:39:02]  *** Contents of shared directory: ***
[2026-01-27 05:39:02] total 408948
[2026-01-27 05:39:02] -rw-r--r-- 2 boinc boinc 248955956 Jan 27 03:59 ATLAS.root_0
[2026-01-27 05:39:02] -rw-r--r-- 2 boinc boinc    597783 Jan 27 03:59 input.tar.gz
[2026-01-27 05:39:02] -rw-r--r-- 2 boinc boinc     15845 Jan 27 03:59 start_atlas.sh
[2026-01-27 05:39:02] -rw------- 1 boinc boinc 168040366 Jan 27 05:38 HITS.pool.root.1
[2026-01-27 05:39:02] -rw------- 1 boinc boinc   1136640 Jan 27 05:39 result.tar.gz
05:39:04 (1513350): run_atlas exited; CPU time 17106.215371
05:39:04 (1513350): called boinc_finish(0)

</stderr_txt>
]]>

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