Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:31:55 (3938843): wrapper (7.7.26015): starting
07:31:55 (3938843): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 07:31:56] Arguments: --nthreads 3
[2026-01-27 07:31:56] Threads: 3
[2026-01-27 07:31:56] Checking for CVMFS
[2026-01-27 07:31:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 07:31:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 07:31:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 07:31:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 07:31:57] 2.9.2.0 2524488 9549 95024 155575 3 50 18196915 36864000 0 130560 0 4141660 99.986 305367 4717 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 07:31:57] CVMFS is ok
[2026-01-27 07:31:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 07:31:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 07:31:57] Further information can be found at the LHC@home message board.
[2026-01-27 07:31:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 07:31:57] Checking for apptainer binary...
[2026-01-27 07:31:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 07:31:57] Running /usr/bin/apptainer --version
[2026-01-27 07:31:57] apptainer version 1.4.1-1.1
[2026-01-27 07:31:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 07:31:57] thA371
[2026-01-27 07:31:57] apptainer works
[2026-01-27 07:31:57] Set ATHENA_PROC_NUMBER=3
[2026-01-27 07:31:57] Set ATHENA_CORE_NUMBER=3
[2026-01-27 07:31:57] Starting ATLAS job with PandaID=6983061309
[2026-01-27 07:31:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:54:33]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:54:33] 2026-01-27 07:54:01,801 | INFO     | --- collectZombieJob: --- 10, [3947306]
[2026-01-27 08:54:33] 2026-01-27 07:54:01,801 | INFO     | zombie collector waiting for pid 3947306
[2026-01-27 08:54:33] 2026-01-27 07:54:01,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:54:33] 2026-01-27 07:54:01,801 | INFO     | collected zombie processes
[2026-01-27 08:54:33] 2026-01-27 07:54:01,801 | INFO     | will attempt to kill all subprocesses of pid=3947306
[2026-01-27 08:54:33] 2026-01-27 07:54:01,843 | INFO     | process IDs to be killed: [3947306] (in reverse order)
[2026-01-27 08:54:33] 2026-01-27 07:54:01,866 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:54:33] 2026-01-27 07:54:01,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:54:33] 2026-01-27 07:54:01,868 | INFO     | did not find any defunct processes belonging to 3947306
[2026-01-27 08:54:33] 2026-01-27 07:54:01,869 | INFO     | did not find any defunct processes belonging to 3947306
[2026-01-27 08:54:33] 2026-01-27 07:54:01,869 | INFO     | ready for new job
[2026-01-27 08:54:33] 2026-01-27 07:54:01,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:54:33] 2026-01-27 07:54:01,869 | INFO     | **************************************
[2026-01-27 08:54:33] 2026-01-27 07:54:01,870 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:54:33] 2026-01-27 07:54:01,870 | INFO     | **************************************
[2026-01-27 08:54:33] 2026-01-27 07:54:01,870 | INFO     | 
[2026-01-27 08:54:33] 2026-01-27 07:54:01,870 | INFO     | architecture information:
[2026-01-27 08:54:33] 2026-01-27 07:54:01,870 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:54:33] 2026-01-27 07:54:01,878 | INFO     | cat /etc/os-release:
[2026-01-27 08:54:33] NAME="CentOS Linux"
[2026-01-27 08:54:33] VERSION="7 (Core)"
[2026-01-27 08:54:33] ID="centos"
[2026-01-27 08:54:33] ID_LIKE="rhel fedora"
[2026-01-27 08:54:33] VERSION_ID="7"
[2026-01-27 08:54:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:54:33] ANSI_COLOR="0;31"
[2026-01-27 08:54:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:54:33] HOME_URL="https://www.centos.org/"
[2026-01-27 08:54:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:54:33] 
[2026-01-27 08:54:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:54:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:54:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:54:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:54:33] 
[2026-01-27 08:54:33] 2026-01-27 07:54:01,879 | INFO     | **************************************
[2026-01-27 08:54:33] 2026-01-27 07:54:02,379 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 08:54:33] 2026-01-27 07:54:02,391 | INFO     | sufficient remaining disk space (336620158976 B)
[2026-01-27 08:54:33] 2026-01-27 07:54:02,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:54:33] 2026-01-27 07:54:02,391 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:54:33] 2026-01-27 07:54:02,391 | INFO     | update_server=False
[2026-01-27 08:54:33] 2026-01-27 07:54:02,391 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:54:33] 2026-01-27 07:54:02,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:54:33] 2026-01-27 07:54:02,416 | INFO     | aborting loop
[2026-01-27 08:54:33] 2026-01-27 07:54:02,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:54:33] 2026-01-27 07:54:02,871 | INFO     | all payload control threads have been joined
[2026-01-27 08:54:33] 2026-01-27 07:54:03,397 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:03,401 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:03,421 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:03,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:54:33] 2026-01-27 07:54:03,486 | INFO     | all data control threads have been joined
[2026-01-27 08:54:33] 2026-01-27 07:54:03,559 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:03,875 | INFO     | [payload] control thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:03,966 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:03,986 | INFO     | all job control threads have been joined
[2026-01-27 08:54:33] 2026-01-27 07:54:04,484 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:04,491 | INFO     | [data] control thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:04,704 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:04,790 | INFO     | [job] validate thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:04,861 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:04,861 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:04,991 | INFO     | [job] control thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:05,384 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:54:33] 2026-01-27 07:54:06,386 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:07,461 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:12,869 | INFO     | job.realtimelogging is not enabled
[2026-01-27 08:54:33] 2026-01-27 07:54:13,876 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:54:33] 2026-01-27 07:54:14,142 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:54:33] 2026-01-27 07:54:14,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607781209920)>', '<ExcThread(monitor, started 140607162939136)>']
[2026-01-27 08:54:33] 2026-01-27 07:54:19,544 | INFO     | all workflow threads have been joined
[2026-01-27 08:54:33] 2026-01-27 07:54:19,544 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:54:33] 2026-01-27 07:54:19,545 | INFO     | traces error code: 0
[2026-01-27 08:54:33] 2026-01-27 07:54:19,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:54:33] 2026-01-27 07:54:33,272 | INFO     | PID=3942883 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 08:54:33] 2026-01-27 07:54:33,272 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:54:33] 2026-01-27 07:54:33,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:54:33] 2026-01-27 07:54:33,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:54:33] 2026-01-27 07:54:33,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:54:33] 2026-01-27 07:54:33,272 | INFO     | [monitor] control thread has ended
[2026-01-27 08:54:33] 2026-01-27 07:54:33,318 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:54:33] 2026-01-27 07:54:33,320 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:54:33] 2026-01-27 07:54:33,323 [wrapper] pilotpid: 3942883
[2026-01-27 08:54:33] 2026-01-27 07:54:33,325 [wrapper] Pilot exit status: 0
[2026-01-27 08:54:33] 2026-01-27 07:54:33,332 [wrapper] pandaids: 6983061309
[2026-01-27 08:54:33] 2026-01-27 07:54:33,348 [wrapper] cleanup supervisor_pilot 3952418 3942884
[2026-01-27 08:54:33] 2026-01-27 07:54:33,350 [wrapper] Test setup, not cleaning
[2026-01-27 08:54:33] 2026-01-27 07:54:33,353 [wrapper] apfmon messages muted
[2026-01-27 08:54:33] 2026-01-27 07:54:33,355 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:54:33] 2026-01-27 07:54:33,357 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:54:33]  *** Error codes and diagnostics ***
[2026-01-27 08:54:33]     "exeErrorCode": 0,
[2026-01-27 08:54:33]     "exeErrorDiag": "",
[2026-01-27 08:54:33]     "pilotErrorCode": 0,
[2026-01-27 08:54:33]     "pilotErrorDiag": "",
[2026-01-27 08:54:33]  *** Listing of results directory ***
[2026-01-27 08:54:33] total 678352
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc    584422 Jan 25 15:11 pilot3.tar.gz
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc      5111 Jan 25 15:11 queuedata.json
[2026-01-27 08:54:33] -rwx------ 1 boinc boinc     36322 Jan 25 15:12 runpilot2-wrapper.sh
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc       100 Jan 27 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:54:33] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 07:31 run_atlas
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc       105 Jan 27 07:31 job.xml
[2026-01-27 08:54:33] -rw-r--r-- 2 boinc boinc 503323230 Jan 27 07:31 EVNT.48310721._000189.pool.root.1
[2026-01-27 08:54:33] -rw-r--r-- 2 boinc boinc    597760 Jan 27 07:31 input.tar.gz
[2026-01-27 08:54:33] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:31 start_atlas.sh
[2026-01-27 08:54:33] drwxrwx--x 2 boinc boinc      4096 Jan 27 07:31 shared
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:31 boinc_setup_complete
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc      6439 Jan 27 07:31 init_data.xml
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:31 boinc_lockfile
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc      2534 Jan 27 07:31 pandaJob.out
[2026-01-27 08:54:33] -rw------- 1 boinc boinc   1004335 Jan 27 07:32 agis_schedconf.cvmfs.json
[2026-01-27 08:54:33] -rw------- 1 boinc boinc   1516246 Jan 27 07:32 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:54:33] -rw------- 1 boinc boinc       426 Jan 27 07:32 workernode_map.json
[2026-01-27 08:54:33] drwx------ 5 boinc boinc      4096 Jan 27 07:32 pilot3
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc       530 Jan 27 08:53 boinc_task_state.xml
[2026-01-27 08:54:33] -rw------- 1 boinc boinc 185368856 Jan 27 08:53 HITS.48310724._009449.pool.root.1
[2026-01-27 08:54:33] -rw------- 1 boinc boinc      1021 Jan 27 08:53 memory_monitor_summary.json
[2026-01-27 08:54:33] -rw------- 1 boinc boinc    286774 Jan 27 08:53 log.48310724._009449.job.log.tgz.1
[2026-01-27 08:54:33] -rw------- 1 boinc boinc      6310 Jan 27 08:54 heartbeat.json
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc      8192 Jan 27 08:54 boinc_mmap_file
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc        27 Jan 27 08:54 wrapper_checkpoint.txt
[2026-01-27 08:54:33] -rw------- 1 boinc boinc       747 Jan 27 08:54 pilotlog.txt
[2026-01-27 08:54:33] -rw------- 1 boinc boinc        95 Jan 27 08:54 pilot_heartbeat.json
[2026-01-27 08:54:33] -rw------- 1 boinc boinc    720844 Jan 27 08:54 log.48310724._009449.job.log.1
[2026-01-27 08:54:33] -rw------- 1 boinc boinc       357 Jan 27 08:54 output.list
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc       620 Jan 27 08:54 runtime_log
[2026-01-27 08:54:33] -rw------- 1 boinc boinc   1024000 Jan 27 08:54 result.tar.gz
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc      8896 Jan 27 08:54 runtime_log.err
[2026-01-27 08:54:33] -rw------- 1 boinc boinc       657 Jan 27 08:54 9TQKDmz1F48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjh7KDmD9HmQo.diag
[2026-01-27 08:54:33] -rw-r--r-- 1 boinc boinc     10704 Jan 27 08:54 stderr.txt
[2026-01-27 08:54:33] HITS file was successfully produced:
[2026-01-27 08:54:33] -rw------- 1 boinc boinc 185368856 Jan 27 08:53 shared/HITS.pool.root.1
[2026-01-27 08:54:33]  *** Contents of shared directory: ***
[2026-01-27 08:54:33] total 674164
[2026-01-27 08:54:33] -rw-r--r-- 2 boinc boinc 503323230 Jan 27 07:31 ATLAS.root_0
[2026-01-27 08:54:33] -rw-r--r-- 2 boinc boinc    597760 Jan 27 07:31 input.tar.gz
[2026-01-27 08:54:33] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:31 start_atlas.sh
[2026-01-27 08:54:33] -rw------- 1 boinc boinc 185368856 Jan 27 08:53 HITS.pool.root.1
[2026-01-27 08:54:33] -rw------- 1 boinc boinc   1024000 Jan 27 08:54 result.tar.gz
08:54:35 (3938843): run_atlas exited; CPU time 14073.410905
08:54:35 (3938843): called boinc_finish(0)

</stderr_txt>
]]>

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